Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06139 and MPMX19_06140 are separated by 5 nucleotides MPMX19_06140 and MPMX19_06141 are separated by 331 nucleotides
MPMX19_06139: MPMX19_06139 - Replicative DNA helicase, at 326,106 to 327,611
_06139
MPMX19_06140: MPMX19_06140 - Alanine racemase, biosynthetic, at 327,617 to 328,738
_06140
MPMX19_06141: MPMX19_06141 - Intermembrane phospholipid transport system permease protein MlaE, at 329,070 to 329,846
_06141
Position (kb) 327
328
329 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 328.721 kb on + strand at 328.722 kb on - strand at 328.722 kb on - strand at 328.722 kb on - strand at 328.736 kb on + strand at 328.736 kb on + strand at 328.737 kb on - strand at 328.796 kb on - strand at 328.905 kb on - strand at 328.905 kb on - strand at 328.905 kb on - strand at 328.905 kb on - strand at 329.003 kb on + strand at 329.003 kb on + strand at 329.003 kb on + strand at 329.020 kb on + strand at 329.020 kb on + strand at 329.020 kb on + strand at 329.020 kb on + strand at 329.021 kb on - strand at 329.021 kb on - strand at 329.068 kb on + strand at 329.068 kb on + strand at 329.069 kb on - strand at 329.181 kb on + strand, within MPMX19_06141 at 329.224 kb on - strand, within MPMX19_06141 at 329.224 kb on - strand, within MPMX19_06141 at 329.286 kb on + strand, within MPMX19_06141 at 329.287 kb on - strand, within MPMX19_06141 at 329.481 kb on + strand, within MPMX19_06141 at 329.487 kb on + strand, within MPMX19_06141 at 329.488 kb on - strand, within MPMX19_06141 at 329.488 kb on - strand, within MPMX19_06141 at 329.616 kb on + strand, within MPMX19_06141 at 329.616 kb on + strand, within MPMX19_06141 at 329.617 kb on - strand, within MPMX19_06141 at 329.617 kb on - strand, within MPMX19_06141 at 329.617 kb on - strand, within MPMX19_06141 at 329.617 kb on - strand, within MPMX19_06141 at 329.715 kb on + strand, within MPMX19_06141
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 328,721 + +0.4 328,722 - -0.1 328,722 - -3.9 328,722 - -1.1 328,736 + +0.2 328,736 + -1.4 328,737 - -1.1 328,796 - -2.8 328,905 - -1.1 328,905 - -0.3 328,905 - -1.8 328,905 - +1.1 329,003 + -1.8 329,003 + +0.5 329,003 + -0.6 329,020 + +0.4 329,020 + -1.9 329,020 + -0.6 329,020 + -0.4 329,021 - -1.7 329,021 - -1.1 329,068 + +0.5 329,068 + -1.9 329,069 - -0.8 329,181 + MPMX19_06141 0.14 +0.0 329,224 - MPMX19_06141 0.20 -0.3 329,224 - MPMX19_06141 0.20 -1.1 329,286 + MPMX19_06141 0.28 +0.0 329,287 - MPMX19_06141 0.28 -1.6 329,481 + MPMX19_06141 0.53 -1.7 329,487 + MPMX19_06141 0.54 -1.7 329,488 - MPMX19_06141 0.54 +0.0 329,488 - MPMX19_06141 0.54 -0.1 329,616 + MPMX19_06141 0.70 -0.3 329,616 + MPMX19_06141 0.70 -1.4 329,617 - MPMX19_06141 0.70 -2.2 329,617 - MPMX19_06141 0.70 -0.8 329,617 - MPMX19_06141 0.70 -1.1 329,617 - MPMX19_06141 0.70 +0.5 329,715 + MPMX19_06141 0.83 -2.1
Or see this region's nucleotide sequence