Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05935 and MPMX19_05936 are separated by 7 nucleotides MPMX19_05936 and MPMX19_05937 are separated by 146 nucleotides
MPMX19_05935: MPMX19_05935 - sugar efflux transporter, at 77,429 to 78,574
_05935
MPMX19_05936: MPMX19_05936 - Alpha-galactosidase, at 78,582 to 79,880
_05936
MPMX19_05937: MPMX19_05937 - hypothetical protein, at 80,027 to 80,833
_05937
Position (kb) 78
79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 77.696 kb on + strand, within MPMX19_05935 at 77.696 kb on + strand, within MPMX19_05935 at 77.697 kb on - strand, within MPMX19_05935 at 77.697 kb on - strand, within MPMX19_05935 at 77.789 kb on + strand, within MPMX19_05935 at 77.789 kb on + strand, within MPMX19_05935 at 77.790 kb on - strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.015 kb on - strand, within MPMX19_05935 at 78.015 kb on - strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.192 kb on - strand, within MPMX19_05935 at 78.192 kb on - strand, within MPMX19_05935 at 78.275 kb on + strand, within MPMX19_05935 at 78.275 kb on + strand, within MPMX19_05935 at 78.276 kb on - strand, within MPMX19_05935 at 78.276 kb on - strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.467 kb on + strand at 78.467 kb on + strand at 78.467 kb on + strand at 78.467 kb on + strand at 78.468 kb on - strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.572 kb on + strand at 78.601 kb on + strand at 78.601 kb on + strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.633 kb on + strand at 78.633 kb on + strand at 79.087 kb on + strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.745 kb on + strand, within MPMX19_05936 at 79.934 kb on + strand at 79.935 kb on - strand at 79.935 kb on - strand at 79.935 kb on - strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.979 kb on + strand at 79.980 kb on - strand at 79.980 kb on - strand at 79.980 kb on - strand at 79.980 kb on - strand at 80.028 kb on + strand at 80.028 kb on + strand at 80.028 kb on + strand at 80.028 kb on + strand at 80.029 kb on - strand at 80.029 kb on - strand at 80.040 kb on + strand at 80.040 kb on + strand at 80.040 kb on + strand at 80.041 kb on - strand at 80.041 kb on - strand at 80.041 kb on - strand at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.120 kb on + strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.121 kb on - strand, within MPMX19_05937 at 80.216 kb on + strand, within MPMX19_05937 at 80.216 kb on + strand, within MPMX19_05937 at 80.217 kb on - strand, within MPMX19_05937 at 80.259 kb on + strand, within MPMX19_05937 at 80.259 kb on + strand, within MPMX19_05937 at 80.260 kb on - strand, within MPMX19_05937 at 80.301 kb on + strand, within MPMX19_05937 at 80.302 kb on - strand, within MPMX19_05937 at 80.302 kb on - strand, within MPMX19_05937 at 80.773 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 77,696 + MPMX19_05935 0.23 -1.1 77,696 + MPMX19_05935 0.23 +0.6 77,697 - MPMX19_05935 0.23 -1.1 77,697 - MPMX19_05935 0.23 -2.3 77,789 + MPMX19_05935 0.31 +0.4 77,789 + MPMX19_05935 0.31 -1.8 77,790 - MPMX19_05935 0.32 +0.8 78,014 + MPMX19_05935 0.51 -1.2 78,014 + MPMX19_05935 0.51 -0.4 78,014 + MPMX19_05935 0.51 -0.1 78,014 + MPMX19_05935 0.51 -0.2 78,014 + MPMX19_05935 0.51 +0.4 78,015 - MPMX19_05935 0.51 +0.2 78,015 - MPMX19_05935 0.51 +0.5 78,191 + MPMX19_05935 0.66 +1.1 78,191 + MPMX19_05935 0.66 -1.9 78,191 + MPMX19_05935 0.66 +0.8 78,191 + MPMX19_05935 0.66 +0.2 78,191 + MPMX19_05935 0.66 +0.1 78,191 + MPMX19_05935 0.66 -0.1 78,191 + MPMX19_05935 0.66 -0.4 78,191 + MPMX19_05935 0.66 -0.6 78,192 - MPMX19_05935 0.67 +0.8 78,192 - MPMX19_05935 0.67 -0.2 78,275 + MPMX19_05935 0.74 -1.3 78,275 + MPMX19_05935 0.74 +0.1 78,276 - MPMX19_05935 0.74 -0.8 78,276 - MPMX19_05935 0.74 +0.2 78,347 + MPMX19_05935 0.80 +0.9 78,347 + MPMX19_05935 0.80 -1.2 78,347 + MPMX19_05935 0.80 -1.3 78,347 + MPMX19_05935 0.80 -1.1 78,347 + MPMX19_05935 0.80 -0.7 78,347 + MPMX19_05935 0.80 +0.4 78,347 + MPMX19_05935 0.80 +1.2 78,347 + MPMX19_05935 0.80 -0.9 78,347 + MPMX19_05935 0.80 -1.7 78,347 + MPMX19_05935 0.80 +0.8 78,347 + MPMX19_05935 0.80 -1.1 78,347 + MPMX19_05935 0.80 -1.6 78,347 + MPMX19_05935 0.80 -3.1 78,347 + MPMX19_05935 0.80 -0.0 78,347 + MPMX19_05935 0.80 +0.2 78,347 + MPMX19_05935 0.80 -0.5 78,347 + MPMX19_05935 0.80 +0.0 78,348 - MPMX19_05935 0.80 -0.0 78,348 - MPMX19_05935 0.80 -0.6 78,348 - MPMX19_05935 0.80 -0.1 78,348 - MPMX19_05935 0.80 -0.9 78,348 - MPMX19_05935 0.80 +0.2 78,348 - MPMX19_05935 0.80 -0.6 78,348 - MPMX19_05935 0.80 -0.5 78,348 - MPMX19_05935 0.80 -0.6 78,348 - MPMX19_05935 0.80 +0.3 78,348 - MPMX19_05935 0.80 -1.1 78,348 - MPMX19_05935 0.80 +0.4 78,348 - MPMX19_05935 0.80 -0.8 78,348 - MPMX19_05935 0.80 -0.2 78,348 - MPMX19_05935 0.80 -0.1 78,348 - MPMX19_05935 0.80 +0.8 78,348 - MPMX19_05935 0.80 -0.1 78,348 - MPMX19_05935 0.80 +1.2 78,348 - MPMX19_05935 0.80 -0.4 78,348 - MPMX19_05935 0.80 -0.5 78,348 - MPMX19_05935 0.80 -1.6 78,348 - MPMX19_05935 0.80 -1.2 78,348 - MPMX19_05935 0.80 -0.2 78,348 - MPMX19_05935 0.80 -2.1 78,348 - MPMX19_05935 0.80 -0.6 78,467 + -0.8 78,467 + -1.6 78,467 + -0.2 78,467 + -1.3 78,468 - -1.6 78,473 + -0.1 78,473 + -0.5 78,473 + +1.0 78,473 + -1.2 78,473 + +0.3 78,473 + -1.7 78,473 + -0.3 78,473 + -1.2 78,473 + -1.1 78,473 + +0.2 78,473 + +0.6 78,473 + +0.3 78,473 + +0.9 78,473 + +0.8 78,473 + -2.6 78,473 + -1.1 78,473 + +0.6 78,473 + +0.0 78,474 - +0.2 78,474 - -0.5 78,474 - +0.0 78,474 - -1.6 78,474 - -1.9 78,474 - -0.4 78,474 - -0.1 78,474 - -1.2 78,474 - -0.2 78,474 - -1.3 78,474 - -0.3 78,474 - +0.1 78,474 - +0.1 78,474 - -0.4 78,475 + +0.0 78,475 + +1.0 78,475 + +0.4 78,475 + +0.1 78,475 + +0.9 78,475 + +1.1 78,475 + +0.4 78,475 + +1.0 78,475 + +0.9 78,475 + -1.9 78,475 + +0.6 78,475 + -1.1 78,475 + +0.2 78,475 + +0.6 78,475 + -0.7 78,476 - -0.1 78,476 - -0.4 78,476 - +0.2 78,476 - -0.6 78,476 - -0.4 78,476 - -1.7 78,476 - -0.1 78,476 - +0.3 78,476 - -1.4 78,476 - +0.2 78,476 - +0.0 78,476 - +1.4 78,476 - -0.2 78,476 - +0.1 78,476 - +0.5 78,476 - +0.4 78,476 - +0.7 78,476 - -0.4 78,476 - +1.2 78,476 - +0.2 78,476 - -3.6 78,476 - +0.8 78,476 - +0.0 78,476 - -0.4 78,476 - -0.1 78,476 - -0.5 78,476 - +0.8 78,476 - -0.5 78,572 + +0.2 78,601 + +0.1 78,601 + -1.0 78,602 - +0.6 78,602 - +0.8 78,602 - -0.9 78,602 - -1.2 78,602 - -0.6 78,602 - -1.0 78,633 + -0.3 78,633 + +0.1 79,087 + MPMX19_05936 0.39 -0.6 79,088 - MPMX19_05936 0.39 -0.6 79,088 - MPMX19_05936 0.39 -1.0 79,088 - MPMX19_05936 0.39 -1.2 79,088 - MPMX19_05936 0.39 +0.0 79,213 + MPMX19_05936 0.49 -0.4 79,213 + MPMX19_05936 0.49 +0.2 79,213 + MPMX19_05936 0.49 -1.6 79,213 + MPMX19_05936 0.49 -1.2 79,214 - MPMX19_05936 0.49 -0.8 79,214 - MPMX19_05936 0.49 -0.5 79,214 - MPMX19_05936 0.49 -1.9 79,214 - MPMX19_05936 0.49 +0.4 79,745 + MPMX19_05936 0.90 -1.1 79,934 + +0.2 79,935 - -1.9 79,935 - -0.1 79,935 - +0.3 79,979 + +1.3 79,979 + +0.2 79,979 + -0.6 79,979 + -0.4 79,979 + -2.4 79,979 + -1.7 79,979 + -0.7 79,980 - -0.6 79,980 - -1.7 79,980 - -1.3 79,980 - +0.0 80,028 + +0.0 80,028 + +0.8 80,028 + -1.5 80,028 + -0.6 80,029 - +0.5 80,029 - +1.5 80,040 + +1.3 80,040 + -0.8 80,040 + +0.3 80,041 - -0.9 80,041 - +0.1 80,041 - -0.2 80,120 + MPMX19_05937 0.12 +0.4 80,120 + MPMX19_05937 0.12 +1.8 80,120 + MPMX19_05937 0.12 +1.4 80,120 + MPMX19_05937 0.12 -2.1 80,120 + MPMX19_05937 0.12 -1.2 80,120 + MPMX19_05937 0.12 -0.1 80,120 + MPMX19_05937 0.12 +1.3 80,120 + MPMX19_05937 0.12 -0.2 80,120 + MPMX19_05937 0.12 -1.1 80,121 - MPMX19_05937 0.12 -1.5 80,121 - MPMX19_05937 0.12 -0.5 80,121 - MPMX19_05937 0.12 +0.2 80,121 - MPMX19_05937 0.12 -1.1 80,121 - MPMX19_05937 0.12 +0.3 80,121 - MPMX19_05937 0.12 -1.3 80,121 - MPMX19_05937 0.12 +0.2 80,121 - MPMX19_05937 0.12 -0.5 80,121 - MPMX19_05937 0.12 +1.6 80,121 - MPMX19_05937 0.12 -0.7 80,121 - MPMX19_05937 0.12 +0.4 80,121 - MPMX19_05937 0.12 -0.7 80,121 - MPMX19_05937 0.12 -0.8 80,121 - MPMX19_05937 0.12 -2.5 80,216 + MPMX19_05937 0.23 +0.9 80,216 + MPMX19_05937 0.23 +0.4 80,217 - MPMX19_05937 0.24 -0.1 80,259 + MPMX19_05937 0.29 -0.6 80,259 + MPMX19_05937 0.29 -0.8 80,260 - MPMX19_05937 0.29 -0.2 80,301 + MPMX19_05937 0.34 -1.2 80,302 - MPMX19_05937 0.34 -0.2 80,302 - MPMX19_05937 0.34 -1.4 80,773 + -1.1
Or see this region's nucleotide sequence