Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05867 and MPMX19_05868 are separated by 40 nucleotides MPMX19_05868 and MPMX19_05869 overlap by 4 nucleotides
MPMX19_05867: MPMX19_05867 - Sialic acid TRAP transporter large permease protein SiaM, at 602,660 to 603,937
_05867
MPMX19_05868: MPMX19_05868 - hypothetical protein, at 603,978 to 604,571
_05868
MPMX19_05869: MPMX19_05869 - hypothetical protein, at 604,568 to 605,185
_05869
Position (kb) 603
604
605 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.069 kb on + strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.070 kb on - strand, within MPMX19_05867 at 603.171 kb on + strand, within MPMX19_05867 at 603.171 kb on + strand, within MPMX19_05867 at 603.171 kb on + strand, within MPMX19_05867 at 603.171 kb on + strand, within MPMX19_05867 at 603.171 kb on + strand, within MPMX19_05867 at 603.171 kb on + strand, within MPMX19_05867 at 603.171 kb on + strand, within MPMX19_05867 at 603.172 kb on - strand, within MPMX19_05867 at 603.172 kb on - strand, within MPMX19_05867 at 603.172 kb on - strand, within MPMX19_05867 at 603.172 kb on - strand, within MPMX19_05867 at 603.198 kb on + strand, within MPMX19_05867 at 603.198 kb on + strand, within MPMX19_05867 at 603.198 kb on + strand, within MPMX19_05867 at 603.199 kb on - strand, within MPMX19_05867 at 603.199 kb on - strand, within MPMX19_05867 at 603.199 kb on - strand, within MPMX19_05867 at 603.199 kb on - strand, within MPMX19_05867 at 603.777 kb on + strand, within MPMX19_05867 at 603.777 kb on + strand, within MPMX19_05867 at 603.777 kb on + strand, within MPMX19_05867 at 603.777 kb on + strand, within MPMX19_05867 at 603.778 kb on - strand, within MPMX19_05867 at 603.778 kb on - strand, within MPMX19_05867 at 603.778 kb on - strand, within MPMX19_05867 at 603.778 kb on - strand, within MPMX19_05867 at 603.778 kb on - strand, within MPMX19_05867 at 603.778 kb on - strand, within MPMX19_05867 at 603.778 kb on - strand, within MPMX19_05867 at 604.189 kb on + strand, within MPMX19_05868 at 604.189 kb on + strand, within MPMX19_05868 at 604.189 kb on + strand, within MPMX19_05868 at 604.189 kb on + strand, within MPMX19_05868 at 604.189 kb on + strand, within MPMX19_05868 at 604.189 kb on + strand, within MPMX19_05868 at 604.189 kb on + strand, within MPMX19_05868 at 604.190 kb on - strand, within MPMX19_05868 at 604.190 kb on - strand, within MPMX19_05868 at 604.190 kb on - strand, within MPMX19_05868 at 604.190 kb on - strand, within MPMX19_05868 at 604.190 kb on - strand, within MPMX19_05868 at 604.190 kb on - strand, within MPMX19_05868 at 604.190 kb on - strand, within MPMX19_05868 at 604.190 kb on - strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.273 kb on + strand, within MPMX19_05868 at 604.274 kb on - strand, within MPMX19_05868 at 604.274 kb on - strand, within MPMX19_05868 at 604.274 kb on - strand, within MPMX19_05868 at 604.274 kb on - strand, within MPMX19_05868 at 604.274 kb on - strand, within MPMX19_05868 at 604.274 kb on - strand, within MPMX19_05868 at 604.274 kb on - strand, within MPMX19_05868 at 604.274 kb on - strand, within MPMX19_05868 at 604.274 kb on - strand, within MPMX19_05868 at 604.274 kb on - strand, within MPMX19_05868 at 604.282 kb on + strand, within MPMX19_05868 at 604.282 kb on + strand, within MPMX19_05868 at 604.282 kb on + strand, within MPMX19_05868 at 604.282 kb on + strand, within MPMX19_05868 at 604.282 kb on + strand, within MPMX19_05868 at 604.282 kb on + strand, within MPMX19_05868 at 604.282 kb on + strand, within MPMX19_05868 at 604.283 kb on - strand, within MPMX19_05868 at 604.283 kb on - strand, within MPMX19_05868 at 604.283 kb on - strand, within MPMX19_05868 at 604.283 kb on - strand, within MPMX19_05868 at 604.468 kb on + strand, within MPMX19_05868 at 604.468 kb on + strand, within MPMX19_05868 at 604.468 kb on + strand, within MPMX19_05868 at 604.468 kb on + strand, within MPMX19_05868 at 604.468 kb on + strand, within MPMX19_05868 at 604.468 kb on + strand, within MPMX19_05868 at 604.468 kb on + strand, within MPMX19_05868 at 604.468 kb on + strand, within MPMX19_05868 at 604.469 kb on - strand, within MPMX19_05868 at 604.469 kb on - strand, within MPMX19_05868 at 604.469 kb on - strand, within MPMX19_05868 at 604.469 kb on - strand, within MPMX19_05868 at 604.469 kb on - strand, within MPMX19_05868 at 604.469 kb on - strand, within MPMX19_05868 at 604.469 kb on - strand, within MPMX19_05868 at 604.680 kb on + strand, within MPMX19_05869 at 604.680 kb on + strand, within MPMX19_05869 at 604.681 kb on - strand, within MPMX19_05869 at 604.681 kb on - strand, within MPMX19_05869 at 604.695 kb on + strand, within MPMX19_05869 at 605.129 kb on + strand at 605.129 kb on + strand at 605.129 kb on + strand at 605.130 kb on - strand at 605.130 kb on - strand at 605.130 kb on - strand at 605.263 kb on + strand at 605.264 kb on - strand at 605.264 kb on - strand at 605.264 kb on - strand at 605.356 kb on - strand at 605.376 kb on + strand at 605.376 kb on + strand at 605.377 kb on - strand at 605.483 kb on + strand at 605.483 kb on + strand at 605.483 kb on + strand at 605.484 kb on - strand at 605.484 kb on - strand at 605.484 kb on - strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.488 kb on + strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand at 605.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 603,069 + MPMX19_05867 0.32 -0.3 603,069 + MPMX19_05867 0.32 -0.3 603,069 + MPMX19_05867 0.32 +0.1 603,069 + MPMX19_05867 0.32 +0.9 603,069 + MPMX19_05867 0.32 +0.6 603,069 + MPMX19_05867 0.32 +0.2 603,069 + MPMX19_05867 0.32 -0.6 603,069 + MPMX19_05867 0.32 -0.6 603,069 + MPMX19_05867 0.32 +0.9 603,069 + MPMX19_05867 0.32 +0.6 603,069 + MPMX19_05867 0.32 +0.1 603,069 + MPMX19_05867 0.32 -0.7 603,069 + MPMX19_05867 0.32 -0.4 603,069 + MPMX19_05867 0.32 -2.1 603,069 + MPMX19_05867 0.32 +1.5 603,069 + MPMX19_05867 0.32 -2.1 603,069 + MPMX19_05867 0.32 +0.6 603,070 - MPMX19_05867 0.32 +1.3 603,070 - MPMX19_05867 0.32 +0.1 603,070 - MPMX19_05867 0.32 -0.4 603,070 - MPMX19_05867 0.32 -0.6 603,070 - MPMX19_05867 0.32 -1.4 603,070 - MPMX19_05867 0.32 -0.0 603,070 - MPMX19_05867 0.32 -1.5 603,070 - MPMX19_05867 0.32 -1.8 603,070 - MPMX19_05867 0.32 +0.5 603,070 - MPMX19_05867 0.32 +1.5 603,070 - MPMX19_05867 0.32 -0.7 603,070 - MPMX19_05867 0.32 -0.1 603,070 - MPMX19_05867 0.32 +0.4 603,070 - MPMX19_05867 0.32 +1.1 603,070 - MPMX19_05867 0.32 -0.6 603,070 - MPMX19_05867 0.32 +0.6 603,070 - MPMX19_05867 0.32 -0.3 603,070 - MPMX19_05867 0.32 +0.9 603,070 - MPMX19_05867 0.32 +0.1 603,070 - MPMX19_05867 0.32 +0.6 603,070 - MPMX19_05867 0.32 -0.2 603,171 + MPMX19_05867 0.40 -1.6 603,171 + MPMX19_05867 0.40 -1.3 603,171 + MPMX19_05867 0.40 -0.5 603,171 + MPMX19_05867 0.40 -1.1 603,171 + MPMX19_05867 0.40 -0.3 603,171 + MPMX19_05867 0.40 +0.4 603,171 + MPMX19_05867 0.40 -0.3 603,172 - MPMX19_05867 0.40 -1.2 603,172 - MPMX19_05867 0.40 -0.6 603,172 - MPMX19_05867 0.40 -1.0 603,172 - MPMX19_05867 0.40 +1.5 603,198 + MPMX19_05867 0.42 +0.1 603,198 + MPMX19_05867 0.42 +0.7 603,198 + MPMX19_05867 0.42 -0.5 603,199 - MPMX19_05867 0.42 -0.4 603,199 - MPMX19_05867 0.42 -0.1 603,199 - MPMX19_05867 0.42 -0.6 603,199 - MPMX19_05867 0.42 -0.1 603,777 + MPMX19_05867 0.87 -0.9 603,777 + MPMX19_05867 0.87 -1.0 603,777 + MPMX19_05867 0.87 +0.7 603,777 + MPMX19_05867 0.87 -1.3 603,778 - MPMX19_05867 0.87 +0.5 603,778 - MPMX19_05867 0.87 +0.0 603,778 - MPMX19_05867 0.87 +1.5 603,778 - MPMX19_05867 0.87 -0.0 603,778 - MPMX19_05867 0.87 -0.7 603,778 - MPMX19_05867 0.87 -0.7 603,778 - MPMX19_05867 0.87 +0.1 604,189 + MPMX19_05868 0.36 +0.7 604,189 + MPMX19_05868 0.36 -1.7 604,189 + MPMX19_05868 0.36 -0.4 604,189 + MPMX19_05868 0.36 -0.1 604,189 + MPMX19_05868 0.36 +0.1 604,189 + MPMX19_05868 0.36 -0.1 604,189 + MPMX19_05868 0.36 -0.8 604,190 - MPMX19_05868 0.36 -0.1 604,190 - MPMX19_05868 0.36 -0.7 604,190 - MPMX19_05868 0.36 -1.1 604,190 - MPMX19_05868 0.36 +0.4 604,190 - MPMX19_05868 0.36 -0.5 604,190 - MPMX19_05868 0.36 +0.4 604,190 - MPMX19_05868 0.36 -3.1 604,190 - MPMX19_05868 0.36 -1.1 604,273 + MPMX19_05868 0.50 -1.2 604,273 + MPMX19_05868 0.50 -1.4 604,273 + MPMX19_05868 0.50 -0.5 604,273 + MPMX19_05868 0.50 -0.5 604,273 + MPMX19_05868 0.50 +0.4 604,273 + MPMX19_05868 0.50 -0.1 604,273 + MPMX19_05868 0.50 -1.4 604,273 + MPMX19_05868 0.50 +0.0 604,273 + MPMX19_05868 0.50 -2.1 604,273 + MPMX19_05868 0.50 -0.3 604,273 + MPMX19_05868 0.50 -1.1 604,273 + MPMX19_05868 0.50 -1.3 604,273 + MPMX19_05868 0.50 +0.2 604,274 - MPMX19_05868 0.50 -0.0 604,274 - MPMX19_05868 0.50 +0.7 604,274 - MPMX19_05868 0.50 -1.4 604,274 - MPMX19_05868 0.50 -0.0 604,274 - MPMX19_05868 0.50 -0.1 604,274 - MPMX19_05868 0.50 +0.7 604,274 - MPMX19_05868 0.50 -1.6 604,274 - MPMX19_05868 0.50 -0.9 604,274 - MPMX19_05868 0.50 +0.2 604,274 - MPMX19_05868 0.50 +0.8 604,282 + MPMX19_05868 0.51 -0.6 604,282 + MPMX19_05868 0.51 -0.0 604,282 + MPMX19_05868 0.51 -1.2 604,282 + MPMX19_05868 0.51 -0.2 604,282 + MPMX19_05868 0.51 -1.3 604,282 + MPMX19_05868 0.51 +0.3 604,282 + MPMX19_05868 0.51 +0.1 604,283 - MPMX19_05868 0.51 -0.7 604,283 - MPMX19_05868 0.51 -0.6 604,283 - MPMX19_05868 0.51 +0.1 604,283 - MPMX19_05868 0.51 -1.0 604,468 + MPMX19_05868 0.82 -0.4 604,468 + MPMX19_05868 0.82 -1.6 604,468 + MPMX19_05868 0.82 -1.0 604,468 + MPMX19_05868 0.82 +1.1 604,468 + MPMX19_05868 0.82 -0.9 604,468 + MPMX19_05868 0.82 -1.4 604,468 + MPMX19_05868 0.82 -1.1 604,468 + MPMX19_05868 0.82 -0.0 604,469 - MPMX19_05868 0.83 -0.0 604,469 - MPMX19_05868 0.83 -1.7 604,469 - MPMX19_05868 0.83 +0.0 604,469 - MPMX19_05868 0.83 -0.0 604,469 - MPMX19_05868 0.83 -1.3 604,469 - MPMX19_05868 0.83 -1.6 604,469 - MPMX19_05868 0.83 +0.6 604,680 + MPMX19_05869 0.18 +1.4 604,680 + MPMX19_05869 0.18 -1.1 604,681 - MPMX19_05869 0.18 -1.1 604,681 - MPMX19_05869 0.18 +0.4 604,695 + MPMX19_05869 0.21 +0.7 605,129 + -0.9 605,129 + -1.1 605,129 + -1.4 605,130 - +0.1 605,130 - -2.0 605,130 - -1.9 605,263 + -1.5 605,264 - +0.6 605,264 - -1.7 605,264 - -1.1 605,356 - +0.4 605,376 + -0.7 605,376 + +0.6 605,377 - -1.3 605,483 + -2.0 605,483 + -1.9 605,483 + -0.7 605,484 - -1.7 605,484 - -0.2 605,484 - +0.4 605,488 + -0.9 605,488 + -0.3 605,488 + -1.2 605,488 + -0.4 605,488 + -1.7 605,488 + -1.5 605,488 + -1.2 605,488 + +0.2 605,488 + -0.0 605,488 + -0.2 605,488 + -0.5 605,488 + -1.6 605,488 + -1.7 605,488 + -0.0 605,488 + +0.3 605,488 + -1.0 605,488 + -0.2 605,488 + +1.7 605,488 + -0.0 605,488 + +0.1 605,488 + -0.3 605,488 + -0.6 605,488 + -0.1 605,488 + -2.2 605,489 - +0.1 605,489 - +2.2 605,489 - -1.2 605,489 - -0.6 605,489 - -0.7 605,489 - -2.0 605,489 - +0.5 605,489 - +0.7 605,489 - -0.0 605,489 - -0.4 605,489 - -1.0 605,489 - -0.6 605,489 - +1.0 605,489 - -0.0 605,489 - +0.7 605,489 - -0.2 605,489 - -1.8 605,489 - -1.1 605,489 - -0.8 605,489 - -0.8 605,489 - -3.0 605,489 - -0.6 605,489 - -0.4 605,489 - -1.1
Or see this region's nucleotide sequence