Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05734 and MPMX19_05735 are separated by 366 nucleotides MPMX19_05735 and MPMX19_05736 are separated by 76 nucleotides MPMX19_05736 and MPMX19_05737 overlap by 4 nucleotides
MPMX19_05734: MPMX19_05734 - Tol-Pal system protein TolQ, at 451,853 to 452,806
_05734
MPMX19_05735: MPMX19_05735 - hypothetical protein, at 453,173 to 453,427
_05735
MPMX19_05736: MPMX19_05736 - hypothetical protein, at 453,504 to 454,274
_05736
MPMX19_05737: MPMX19_05737 - hypothetical protein, at 454,271 to 454,717
_05737
Position (kb) 453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 452.747 kb on + strand at 452.748 kb on - strand at 452.892 kb on + strand at 453.005 kb on - strand at 453.034 kb on - strand at 453.069 kb on + strand at 453.069 kb on + strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.450 kb on - strand at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.851 kb on + strand, within MPMX19_05736 at 453.851 kb on + strand, within MPMX19_05736 at 453.851 kb on + strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.969 kb on + strand, within MPMX19_05736 at 453.969 kb on + strand, within MPMX19_05736 at 453.969 kb on + strand, within MPMX19_05736 at 453.970 kb on - strand, within MPMX19_05736 at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 452,747 + -1.4 452,748 - -2.0 452,892 + -3.4 453,005 - -1.9 453,034 - -0.1 453,069 + -1.8 453,069 + +0.9 453,070 - -1.3 453,070 - -2.3 453,070 - -0.1 453,070 - -0.6 453,070 - -0.0 453,070 - -1.1 453,450 - -0.3 453,849 + MPMX19_05736 0.45 -0.2 453,849 + MPMX19_05736 0.45 -1.1 453,849 + MPMX19_05736 0.45 -1.1 453,849 + MPMX19_05736 0.45 -1.0 453,849 + MPMX19_05736 0.45 -1.5 453,849 + MPMX19_05736 0.45 +1.1 453,849 + MPMX19_05736 0.45 -0.3 453,849 + MPMX19_05736 0.45 -0.4 453,849 + MPMX19_05736 0.45 -0.0 453,849 + MPMX19_05736 0.45 -0.5 453,849 + MPMX19_05736 0.45 +0.1 453,849 + MPMX19_05736 0.45 -2.2 453,849 + MPMX19_05736 0.45 +0.1 453,849 + MPMX19_05736 0.45 +0.8 453,849 + MPMX19_05736 0.45 -0.0 453,849 + MPMX19_05736 0.45 -0.4 453,849 + MPMX19_05736 0.45 +0.1 453,849 + MPMX19_05736 0.45 +1.0 453,849 + MPMX19_05736 0.45 -1.4 453,849 + MPMX19_05736 0.45 +0.7 453,849 + MPMX19_05736 0.45 -0.6 453,849 + MPMX19_05736 0.45 -0.2 453,849 + MPMX19_05736 0.45 +0.5 453,849 + MPMX19_05736 0.45 +1.0 453,849 + MPMX19_05736 0.45 +0.1 453,849 + MPMX19_05736 0.45 +0.3 453,849 + MPMX19_05736 0.45 -0.5 453,849 + MPMX19_05736 0.45 -1.3 453,849 + MPMX19_05736 0.45 -0.6 453,849 + MPMX19_05736 0.45 -0.2 453,849 + MPMX19_05736 0.45 -0.7 453,849 + MPMX19_05736 0.45 +0.1 453,849 + MPMX19_05736 0.45 -0.9 453,849 + MPMX19_05736 0.45 +0.8 453,849 + MPMX19_05736 0.45 +1.5 453,849 + MPMX19_05736 0.45 +1.1 453,849 + MPMX19_05736 0.45 -0.2 453,849 + MPMX19_05736 0.45 -0.6 453,849 + MPMX19_05736 0.45 +0.7 453,849 + MPMX19_05736 0.45 +1.2 453,850 - MPMX19_05736 0.45 -0.9 453,850 - MPMX19_05736 0.45 +1.0 453,850 - MPMX19_05736 0.45 -1.1 453,850 - MPMX19_05736 0.45 -0.9 453,850 - MPMX19_05736 0.45 +1.6 453,850 - MPMX19_05736 0.45 -2.2 453,850 - MPMX19_05736 0.45 -0.2 453,850 - MPMX19_05736 0.45 -1.0 453,850 - MPMX19_05736 0.45 +0.1 453,850 - MPMX19_05736 0.45 -1.1 453,850 - MPMX19_05736 0.45 +1.5 453,850 - MPMX19_05736 0.45 +0.3 453,850 - MPMX19_05736 0.45 -0.6 453,850 - MPMX19_05736 0.45 +0.1 453,850 - MPMX19_05736 0.45 -2.0 453,850 - MPMX19_05736 0.45 -1.2 453,850 - MPMX19_05736 0.45 +0.5 453,850 - MPMX19_05736 0.45 -1.2 453,850 - MPMX19_05736 0.45 -0.3 453,850 - MPMX19_05736 0.45 -0.8 453,850 - MPMX19_05736 0.45 +1.0 453,850 - MPMX19_05736 0.45 -0.9 453,850 - MPMX19_05736 0.45 -0.8 453,850 - MPMX19_05736 0.45 -0.4 453,850 - MPMX19_05736 0.45 +0.1 453,850 - MPMX19_05736 0.45 -2.3 453,850 - MPMX19_05736 0.45 -0.4 453,850 - MPMX19_05736 0.45 +0.6 453,850 - MPMX19_05736 0.45 -0.3 453,850 - MPMX19_05736 0.45 -1.3 453,850 - MPMX19_05736 0.45 +1.4 453,850 - MPMX19_05736 0.45 -0.2 453,850 - MPMX19_05736 0.45 -0.9 453,850 - MPMX19_05736 0.45 -0.0 453,850 - MPMX19_05736 0.45 -0.4 453,850 - MPMX19_05736 0.45 +0.5 453,850 - MPMX19_05736 0.45 +0.8 453,850 - MPMX19_05736 0.45 -0.1 453,850 - MPMX19_05736 0.45 -0.1 453,850 - MPMX19_05736 0.45 +1.1 453,850 - MPMX19_05736 0.45 -0.5 453,850 - MPMX19_05736 0.45 -1.0 453,850 - MPMX19_05736 0.45 +0.4 453,851 + MPMX19_05736 0.45 -1.3 453,851 + MPMX19_05736 0.45 -0.5 453,851 + MPMX19_05736 0.45 +0.1 453,852 - MPMX19_05736 0.45 -0.1 453,852 - MPMX19_05736 0.45 +0.1 453,852 - MPMX19_05736 0.45 +0.9 453,852 - MPMX19_05736 0.45 -0.3 453,852 - MPMX19_05736 0.45 -1.3 453,852 - MPMX19_05736 0.45 -1.4 453,852 - MPMX19_05736 0.45 -0.4 453,852 - MPMX19_05736 0.45 -0.9 453,852 - MPMX19_05736 0.45 -1.3 453,969 + MPMX19_05736 0.60 -2.0 453,969 + MPMX19_05736 0.60 -0.5 453,969 + MPMX19_05736 0.60 +2.0 453,970 - MPMX19_05736 0.60 -0.7 454,239 + -1.1 454,239 + +0.7 454,239 + -0.5 454,239 + +1.5 454,239 + -0.3 454,239 + -1.1 454,239 + -0.4 454,240 - -1.5 454,240 - +2.0 454,240 - -1.2 454,240 - -1.7 454,240 - -0.3 454,240 - -0.1
Or see this region's nucleotide sequence