Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05696 and MPMX19_05697 are separated by 44 nucleotides MPMX19_05697 and MPMX19_05698 are separated by 249 nucleotides
MPMX19_05696: MPMX19_05696 - Blue-light-activated histidine kinase 2, at 411,968 to 412,681
_05696
MPMX19_05697: MPMX19_05697 - hypothetical protein, at 412,726 to 413,109
_05697
MPMX19_05698: MPMX19_05698 - Cardiolipin synthase, at 413,359 to 415,641
_05698
Position (kb) 412
413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 411.752 kb on + strand at 411.752 kb on + strand at 411.753 kb on - strand at 411.753 kb on - strand at 411.753 kb on - strand at 411.753 kb on - strand at 411.753 kb on - strand at 411.753 kb on - strand at 411.757 kb on + strand at 411.757 kb on + strand at 411.757 kb on + strand at 411.758 kb on - strand at 411.758 kb on - strand at 411.758 kb on - strand at 411.758 kb on - strand at 411.758 kb on - strand at 411.795 kb on + strand at 411.795 kb on + strand at 411.795 kb on + strand at 411.795 kb on + strand at 411.795 kb on + strand at 411.795 kb on + strand at 411.796 kb on - strand at 411.796 kb on - strand at 411.796 kb on - strand at 411.796 kb on - strand at 411.796 kb on - strand at 411.796 kb on - strand at 411.796 kb on - strand at 411.796 kb on - strand at 411.796 kb on - strand at 411.819 kb on + strand at 411.819 kb on + strand at 411.820 kb on - strand at 411.820 kb on - strand at 411.820 kb on - strand at 411.835 kb on + strand at 411.836 kb on - strand at 411.870 kb on + strand at 411.909 kb on + strand at 411.909 kb on + strand at 411.909 kb on + strand at 411.909 kb on + strand at 411.909 kb on + strand at 411.909 kb on + strand at 411.910 kb on - strand at 411.910 kb on - strand at 411.910 kb on - strand at 411.910 kb on - strand at 411.910 kb on - strand at 411.910 kb on - strand at 411.910 kb on - strand at 411.910 kb on - strand at 411.998 kb on + strand at 411.998 kb on + strand at 411.998 kb on + strand at 411.998 kb on + strand at 411.998 kb on + strand at 411.999 kb on - strand at 411.999 kb on - strand at 411.999 kb on - strand at 412.202 kb on + strand, within MPMX19_05696 at 412.202 kb on + strand, within MPMX19_05696 at 412.203 kb on - strand, within MPMX19_05696 at 412.203 kb on - strand, within MPMX19_05696 at 412.244 kb on + strand, within MPMX19_05696 at 412.245 kb on - strand, within MPMX19_05696 at 412.295 kb on + strand, within MPMX19_05696 at 412.295 kb on + strand, within MPMX19_05696 at 412.295 kb on + strand, within MPMX19_05696 at 412.295 kb on + strand, within MPMX19_05696 at 412.295 kb on + strand, within MPMX19_05696 at 412.295 kb on + strand, within MPMX19_05696 at 412.295 kb on + strand, within MPMX19_05696 at 412.295 kb on + strand, within MPMX19_05696 at 412.296 kb on - strand, within MPMX19_05696 at 412.296 kb on - strand, within MPMX19_05696 at 412.296 kb on - strand, within MPMX19_05696 at 412.394 kb on + strand, within MPMX19_05696 at 412.394 kb on + strand, within MPMX19_05696 at 412.394 kb on + strand, within MPMX19_05696 at 412.394 kb on + strand, within MPMX19_05696 at 412.395 kb on - strand, within MPMX19_05696 at 412.395 kb on - strand, within MPMX19_05696 at 412.395 kb on - strand, within MPMX19_05696 at 412.395 kb on - strand, within MPMX19_05696 at 412.395 kb on - strand, within MPMX19_05696 at 412.395 kb on - strand, within MPMX19_05696 at 412.590 kb on + strand, within MPMX19_05696 at 412.590 kb on + strand, within MPMX19_05696 at 412.590 kb on + strand, within MPMX19_05696 at 412.591 kb on - strand, within MPMX19_05696 at 412.935 kb on + strand, within MPMX19_05697 at 413.033 kb on + strand, within MPMX19_05697 at 413.033 kb on + strand, within MPMX19_05697 at 413.033 kb on + strand, within MPMX19_05697 at 413.033 kb on + strand, within MPMX19_05697 at 413.034 kb on - strand, within MPMX19_05697 at 413.034 kb on - strand, within MPMX19_05697 at 413.034 kb on - strand, within MPMX19_05697 at 413.034 kb on - strand, within MPMX19_05697 at 413.034 kb on - strand, within MPMX19_05697 at 413.034 kb on - strand, within MPMX19_05697 at 413.034 kb on - strand, within MPMX19_05697 at 413.034 kb on - strand, within MPMX19_05697 at 413.034 kb on - strand, within MPMX19_05697 at 413.034 kb on - strand, within MPMX19_05697 at 413.034 kb on - strand, within MPMX19_05697 at 413.213 kb on + strand at 413.214 kb on - strand at 413.214 kb on - strand at 413.245 kb on + strand at 413.245 kb on + strand at 413.245 kb on + strand at 413.245 kb on + strand at 413.245 kb on + strand at 413.245 kb on + strand at 413.246 kb on - strand at 413.246 kb on - strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.327 kb on + strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.328 kb on - strand at 413.362 kb on + strand at 413.362 kb on + strand at 413.362 kb on + strand at 413.362 kb on + strand at 413.362 kb on + strand at 413.362 kb on + strand at 413.362 kb on + strand at 413.362 kb on + strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.363 kb on - strand at 413.515 kb on + strand at 413.515 kb on + strand at 413.515 kb on + strand at 413.515 kb on + strand at 413.515 kb on + strand at 413.515 kb on + strand at 413.516 kb on - strand at 413.516 kb on - strand at 413.516 kb on - strand at 413.516 kb on - strand at 413.516 kb on - strand at 413.516 kb on - strand at 413.516 kb on - strand at 413.516 kb on - strand at 413.516 kb on - strand at 413.516 kb on - strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.563 kb on + strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.564 kb on - strand at 413.707 kb on + strand, within MPMX19_05698 at 413.707 kb on + strand, within MPMX19_05698 at 413.707 kb on + strand, within MPMX19_05698 at 413.707 kb on + strand, within MPMX19_05698 at 413.707 kb on + strand, within MPMX19_05698 at 413.707 kb on + strand, within MPMX19_05698 at 413.707 kb on + strand, within MPMX19_05698 at 413.707 kb on + strand, within MPMX19_05698 at 413.708 kb on - strand, within MPMX19_05698 at 413.708 kb on - strand, within MPMX19_05698 at 413.708 kb on - strand, within MPMX19_05698 at 413.708 kb on - strand, within MPMX19_05698 at 413.708 kb on - strand, within MPMX19_05698 at 413.708 kb on - strand, within MPMX19_05698 at 413.708 kb on - strand, within MPMX19_05698 at 413.708 kb on - strand, within MPMX19_05698 at 413.785 kb on + strand, within MPMX19_05698 at 413.785 kb on + strand, within MPMX19_05698 at 413.786 kb on - strand, within MPMX19_05698 at 413.953 kb on + strand, within MPMX19_05698 at 413.953 kb on + strand, within MPMX19_05698 at 413.953 kb on + strand, within MPMX19_05698 at 413.953 kb on + strand, within MPMX19_05698 at 413.954 kb on - strand, within MPMX19_05698 at 413.954 kb on - strand, within MPMX19_05698
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 411,752 + -2.0 411,752 + -0.7 411,753 - -1.9 411,753 - -1.5 411,753 - -0.5 411,753 - -0.5 411,753 - -0.2 411,753 - +0.1 411,757 + +1.1 411,757 + +0.8 411,757 + -0.3 411,758 - -0.5 411,758 - -0.3 411,758 - -0.4 411,758 - -0.9 411,758 - -1.0 411,795 + -0.5 411,795 + -0.3 411,795 + -0.6 411,795 + +1.7 411,795 + -0.8 411,795 + -1.1 411,796 - -0.3 411,796 - +0.7 411,796 - +0.6 411,796 - -2.6 411,796 - +0.5 411,796 - +0.4 411,796 - +0.1 411,796 - -1.7 411,796 - -2.7 411,819 + -1.6 411,819 + -1.2 411,820 - -1.1 411,820 - +0.1 411,820 - -1.7 411,835 + -0.4 411,836 - -2.0 411,870 + +0.3 411,909 + -0.6 411,909 + -0.2 411,909 + -0.4 411,909 + -0.6 411,909 + -0.1 411,909 + -1.4 411,910 - -1.0 411,910 - -2.6 411,910 - -0.4 411,910 - -2.3 411,910 - -2.7 411,910 - -1.0 411,910 - +1.7 411,910 - +0.4 411,998 + -0.9 411,998 + -0.1 411,998 + -1.8 411,998 + +1.1 411,998 + -0.2 411,999 - -1.3 411,999 - -0.2 411,999 - -1.0 412,202 + MPMX19_05696 0.33 -0.3 412,202 + MPMX19_05696 0.33 -1.2 412,203 - MPMX19_05696 0.33 -0.4 412,203 - MPMX19_05696 0.33 -0.1 412,244 + MPMX19_05696 0.39 -0.2 412,245 - MPMX19_05696 0.39 -0.7 412,295 + MPMX19_05696 0.46 -1.1 412,295 + MPMX19_05696 0.46 -1.1 412,295 + MPMX19_05696 0.46 -0.3 412,295 + MPMX19_05696 0.46 -1.3 412,295 + MPMX19_05696 0.46 +0.3 412,295 + MPMX19_05696 0.46 -1.1 412,295 + MPMX19_05696 0.46 -0.7 412,295 + MPMX19_05696 0.46 -0.6 412,296 - MPMX19_05696 0.46 +0.4 412,296 - MPMX19_05696 0.46 +0.1 412,296 - MPMX19_05696 0.46 -0.6 412,394 + MPMX19_05696 0.60 -1.6 412,394 + MPMX19_05696 0.60 -0.9 412,394 + MPMX19_05696 0.60 -0.1 412,394 + MPMX19_05696 0.60 -1.0 412,395 - MPMX19_05696 0.60 -0.3 412,395 - MPMX19_05696 0.60 -0.7 412,395 - MPMX19_05696 0.60 -0.3 412,395 - MPMX19_05696 0.60 +0.2 412,395 - MPMX19_05696 0.60 -0.0 412,395 - MPMX19_05696 0.60 -0.4 412,590 + MPMX19_05696 0.87 -2.3 412,590 + MPMX19_05696 0.87 -1.7 412,590 + MPMX19_05696 0.87 +0.5 412,591 - MPMX19_05696 0.87 -0.2 412,935 + MPMX19_05697 0.54 +0.5 413,033 + MPMX19_05697 0.80 -1.3 413,033 + MPMX19_05697 0.80 +1.1 413,033 + MPMX19_05697 0.80 -1.6 413,033 + MPMX19_05697 0.80 -1.3 413,034 - MPMX19_05697 0.80 -2.1 413,034 - MPMX19_05697 0.80 -0.6 413,034 - MPMX19_05697 0.80 +0.1 413,034 - MPMX19_05697 0.80 +1.7 413,034 - MPMX19_05697 0.80 +1.1 413,034 - MPMX19_05697 0.80 +0.1 413,034 - MPMX19_05697 0.80 -0.9 413,034 - MPMX19_05697 0.80 +0.7 413,034 - MPMX19_05697 0.80 +0.3 413,034 - MPMX19_05697 0.80 +2.0 413,034 - MPMX19_05697 0.80 +0.9 413,213 + +0.1 413,214 - -2.1 413,214 - +0.1 413,245 + -1.0 413,245 + -1.9 413,245 + +0.8 413,245 + -0.3 413,245 + -0.3 413,245 + -1.1 413,246 - -0.7 413,246 - +1.3 413,327 + -0.2 413,327 + -2.9 413,327 + +1.3 413,327 + -1.2 413,327 + -0.2 413,327 + +0.4 413,327 + -1.9 413,327 + +0.4 413,327 + -1.3 413,327 + -1.1 413,327 + -0.5 413,327 + +1.7 413,327 + +0.5 413,327 + +0.6 413,327 + -1.6 413,327 + -0.1 413,327 + -0.1 413,327 + +0.7 413,327 + +1.0 413,328 - -1.7 413,328 - -0.2 413,328 - +0.4 413,328 - +1.7 413,328 - -2.2 413,328 - -0.3 413,328 - +0.5 413,328 - -2.1 413,328 - -1.3 413,328 - +0.4 413,328 - -0.6 413,328 - -0.7 413,328 - -2.3 413,328 - -0.2 413,328 - +2.4 413,328 - -1.3 413,328 - -0.9 413,328 - -1.7 413,328 - -1.9 413,328 - -0.3 413,328 - -0.6 413,328 - -1.3 413,328 - -1.3 413,328 - -0.9 413,328 - -0.9 413,328 - -1.4 413,362 + -1.2 413,362 + -2.1 413,362 + -0.6 413,362 + -1.3 413,362 + -1.2 413,362 + +0.7 413,362 + -0.3 413,362 + -0.7 413,363 - -0.4 413,363 - -1.6 413,363 - -2.2 413,363 - -0.1 413,363 - -0.6 413,363 - -0.4 413,363 - -0.2 413,363 - -0.8 413,363 - +0.4 413,363 - -0.8 413,363 - -0.7 413,363 - +0.1 413,363 - -1.1 413,363 - -2.3 413,363 - +1.2 413,363 - -0.6 413,363 - -1.9 413,363 - -0.7 413,363 - +0.5 413,363 - +2.0 413,363 - +0.1 413,363 - +0.7 413,363 - -1.1 413,363 - -0.3 413,515 + +1.0 413,515 + -1.3 413,515 + +0.2 413,515 + +1.3 413,515 + +0.2 413,515 + -0.3 413,516 - +1.5 413,516 - +0.1 413,516 - -2.4 413,516 - -1.1 413,516 - +0.1 413,516 - +0.1 413,516 - -0.9 413,516 - +0.4 413,516 - -0.4 413,516 - -0.5 413,563 + +0.9 413,563 + +1.0 413,563 + +0.3 413,563 + +1.7 413,563 + +1.7 413,563 + -0.4 413,563 + -0.6 413,563 + -1.3 413,563 + +2.0 413,563 + +0.1 413,563 + -0.3 413,563 + -1.9 413,563 + -1.3 413,563 + -0.4 413,563 + +2.2 413,563 + +1.1 413,563 + -0.9 413,563 + +0.1 413,563 + -2.2 413,563 + +1.1 413,563 + -1.5 413,563 + -0.6 413,563 + -1.1 413,563 + -0.3 413,563 + -0.1 413,563 + +1.1 413,563 + -1.3 413,563 + +0.1 413,564 - -0.5 413,564 - -0.1 413,564 - -0.9 413,564 - +0.3 413,564 - -0.6 413,564 - -0.6 413,564 - -2.3 413,564 - +0.6 413,564 - -0.3 413,564 - +0.1 413,564 - -1.4 413,564 - -1.7 413,564 - -0.2 413,564 - -0.5 413,564 - -0.0 413,564 - -0.4 413,564 - -1.3 413,564 - +1.0 413,564 - -0.4 413,564 - -0.4 413,564 - -0.4 413,564 - -1.4 413,564 - +0.8 413,564 - -0.0 413,564 - +0.7 413,564 - +0.9 413,564 - -0.7 413,707 + MPMX19_05698 0.15 -0.6 413,707 + MPMX19_05698 0.15 +0.6 413,707 + MPMX19_05698 0.15 +0.3 413,707 + MPMX19_05698 0.15 -1.3 413,707 + MPMX19_05698 0.15 -0.7 413,707 + MPMX19_05698 0.15 +0.6 413,707 + MPMX19_05698 0.15 +0.4 413,707 + MPMX19_05698 0.15 -0.1 413,708 - MPMX19_05698 0.15 -0.2 413,708 - MPMX19_05698 0.15 +0.6 413,708 - MPMX19_05698 0.15 +0.5 413,708 - MPMX19_05698 0.15 -0.8 413,708 - MPMX19_05698 0.15 -0.3 413,708 - MPMX19_05698 0.15 -0.3 413,708 - MPMX19_05698 0.15 -0.4 413,708 - MPMX19_05698 0.15 -1.4 413,785 + MPMX19_05698 0.19 -1.0 413,785 + MPMX19_05698 0.19 -1.1 413,786 - MPMX19_05698 0.19 -1.5 413,953 + MPMX19_05698 0.26 +0.8 413,953 + MPMX19_05698 0.26 -1.4 413,953 + MPMX19_05698 0.26 -1.1 413,953 + MPMX19_05698 0.26 +0.1 413,954 - MPMX19_05698 0.26 -0.3 413,954 - MPMX19_05698 0.26 -1.4
Or see this region's nucleotide sequence