Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05622 and MPMX19_05623 are separated by 9 nucleotides MPMX19_05623 and MPMX19_05624 are separated by 237 nucleotides
MPMX19_05622: MPMX19_05622 - Sensor histidine kinase RegB, at 336,142 to 337,536
_05622
MPMX19_05623: MPMX19_05623 - Photosynthetic apparatus regulatory protein RegA, at 337,546 to 338,142
_05623
MPMX19_05624: MPMX19_05624 - hypothetical protein, at 338,380 to 338,541
_05624
Position (kb) 337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 336.547 kb on + strand, within MPMX19_05622 at 336.548 kb on - strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 337.297 kb on + strand, within MPMX19_05622 at 337.298 kb on - strand, within MPMX19_05622 at 337.298 kb on - strand, within MPMX19_05622 at 337.298 kb on - strand, within MPMX19_05622 at 337.298 kb on - strand, within MPMX19_05622 at 337.298 kb on - strand, within MPMX19_05622 at 337.354 kb on - strand, within MPMX19_05622 at 337.354 kb on - strand, within MPMX19_05622 at 337.354 kb on - strand, within MPMX19_05622 at 337.354 kb on - strand, within MPMX19_05622 at 337.912 kb on + strand, within MPMX19_05623 at 337.912 kb on + strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.943 kb on + strand, within MPMX19_05623 at 337.943 kb on + strand, within MPMX19_05623 at 337.943 kb on + strand, within MPMX19_05623 at 337.944 kb on - strand, within MPMX19_05623 at 337.944 kb on - strand, within MPMX19_05623 at 337.944 kb on - strand, within MPMX19_05623 at 337.944 kb on - strand, within MPMX19_05623 at 338.469 kb on + strand, within MPMX19_05624 at 338.469 kb on + strand, within MPMX19_05624 at 338.469 kb on + strand, within MPMX19_05624 at 338.469 kb on + strand, within MPMX19_05624 at 338.599 kb on - strand at 338.738 kb on + strand at 338.738 kb on + strand at 338.739 kb on - strand at 338.944 kb on + strand at 338.945 kb on - strand at 338.945 kb on - strand at 338.971 kb on + strand at 338.971 kb on + strand at 338.971 kb on + strand at 338.972 kb on - strand at 338.972 kb on - strand at 338.972 kb on - strand at 339.000 kb on - strand at 339.058 kb on + strand at 339.058 kb on + strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 336,547 + MPMX19_05622 0.29 +0.4 336,548 - MPMX19_05622 0.29 +0.3 336,655 + MPMX19_05622 0.37 +0.5 336,655 + MPMX19_05622 0.37 -1.4 336,655 + MPMX19_05622 0.37 +0.0 336,655 + MPMX19_05622 0.37 +1.3 336,655 + MPMX19_05622 0.37 +0.7 336,656 - MPMX19_05622 0.37 +0.9 336,656 - MPMX19_05622 0.37 -0.5 336,656 - MPMX19_05622 0.37 -2.0 336,656 - MPMX19_05622 0.37 -1.4 336,656 - MPMX19_05622 0.37 -0.2 336,656 - MPMX19_05622 0.37 +0.2 336,656 - MPMX19_05622 0.37 +0.7 336,709 + MPMX19_05622 0.41 -0.3 336,709 + MPMX19_05622 0.41 +0.5 336,709 + MPMX19_05622 0.41 -0.4 336,709 + MPMX19_05622 0.41 +0.3 336,709 + MPMX19_05622 0.41 +1.2 336,710 - MPMX19_05622 0.41 +0.3 336,710 - MPMX19_05622 0.41 -1.3 336,710 - MPMX19_05622 0.41 -0.2 336,710 - MPMX19_05622 0.41 +0.9 336,908 - MPMX19_05622 0.55 -0.2 336,908 - MPMX19_05622 0.55 -0.7 336,908 - MPMX19_05622 0.55 +0.3 336,908 - MPMX19_05622 0.55 -0.2 336,908 - MPMX19_05622 0.55 +0.6 337,297 + MPMX19_05622 0.83 +0.9 337,298 - MPMX19_05622 0.83 +0.3 337,298 - MPMX19_05622 0.83 +0.5 337,298 - MPMX19_05622 0.83 +0.2 337,298 - MPMX19_05622 0.83 -0.6 337,298 - MPMX19_05622 0.83 -0.1 337,354 - MPMX19_05622 0.87 +0.5 337,354 - MPMX19_05622 0.87 +1.2 337,354 - MPMX19_05622 0.87 -1.9 337,354 - MPMX19_05622 0.87 -1.3 337,912 + MPMX19_05623 0.61 +0.9 337,912 + MPMX19_05623 0.61 -1.3 337,913 - MPMX19_05623 0.61 +0.1 337,913 - MPMX19_05623 0.61 -0.4 337,913 - MPMX19_05623 0.61 +0.1 337,913 - MPMX19_05623 0.61 +0.6 337,913 - MPMX19_05623 0.61 +0.9 337,943 + MPMX19_05623 0.66 +0.2 337,943 + MPMX19_05623 0.66 -0.7 337,943 + MPMX19_05623 0.66 +0.5 337,944 - MPMX19_05623 0.67 +0.7 337,944 - MPMX19_05623 0.67 -0.6 337,944 - MPMX19_05623 0.67 -1.3 337,944 - MPMX19_05623 0.67 +0.3 338,469 + MPMX19_05624 0.55 +1.5 338,469 + MPMX19_05624 0.55 +0.5 338,469 + MPMX19_05624 0.55 -1.3 338,469 + MPMX19_05624 0.55 -1.2 338,599 - +1.6 338,738 + -1.1 338,738 + -0.9 338,739 - +0.6 338,944 + +1.2 338,945 - +0.1 338,945 - -1.2 338,971 + +0.5 338,971 + -1.1 338,971 + +0.5 338,972 - -0.2 338,972 - -0.1 338,972 - -0.0 339,000 - -1.7 339,058 + -0.0 339,058 + -0.4 339,059 - -0.9 339,059 - -0.7 339,059 - -1.0 339,059 - -2.8 339,059 - -0.9 339,059 - +0.1 339,059 - -0.4 339,059 - -1.9 339,059 - -1.6 339,059 - +0.8 339,059 - -0.7
Or see this region's nucleotide sequence