Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05536 and MPMX19_05537 are separated by 25 nucleotides MPMX19_05537 and MPMX19_05538 are separated by 157 nucleotides MPMX19_05538 and MPMX19_05539 are separated by 111 nucleotides
MPMX19_05536: MPMX19_05536 - dTTP/UTP pyrophosphatase, at 242,017 to 242,649
_05536
MPMX19_05537: MPMX19_05537 - Translation initiation factor IF-1, at 242,675 to 242,893
_05537
MPMX19_05538: MPMX19_05538 - hypothetical protein, at 243,051 to 244,229
_05538
MPMX19_05539: MPMX19_05539 - Sensor histidine kinase RcsC, at 244,341 to 246,692
_05539
Position (kb) 243
244
245 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 242.120 kb on + strand, within MPMX19_05536 at 242.913 kb on - strand at 242.930 kb on - strand at 242.930 kb on - strand at 242.930 kb on - strand at 243.064 kb on + strand at 243.065 kb on - strand at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.337 kb on + strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.338 kb on - strand, within MPMX19_05538 at 243.412 kb on + strand, within MPMX19_05538 at 243.413 kb on - strand, within MPMX19_05538 at 243.544 kb on + strand, within MPMX19_05538 at 243.545 kb on - strand, within MPMX19_05538 at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.326 kb on + strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.327 kb on - strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.328 kb on + strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.329 kb on - strand at 244.672 kb on + strand, within MPMX19_05539 at 244.672 kb on + strand, within MPMX19_05539 at 244.672 kb on + strand, within MPMX19_05539 at 244.672 kb on + strand, within MPMX19_05539 at 244.672 kb on + strand, within MPMX19_05539 at 244.673 kb on - strand, within MPMX19_05539 at 244.673 kb on - strand, within MPMX19_05539 at 244.673 kb on - strand, within MPMX19_05539 at 244.673 kb on - strand, within MPMX19_05539
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 242,120 + MPMX19_05536 0.16 +0.9 242,913 - -0.2 242,930 - -1.6 242,930 - -0.6 242,930 - -0.5 243,064 + +0.6 243,065 - -0.3 243,337 + MPMX19_05538 0.24 +0.5 243,337 + MPMX19_05538 0.24 -0.5 243,337 + MPMX19_05538 0.24 -0.2 243,337 + MPMX19_05538 0.24 -2.7 243,337 + MPMX19_05538 0.24 +0.8 243,337 + MPMX19_05538 0.24 +0.0 243,337 + MPMX19_05538 0.24 +0.6 243,337 + MPMX19_05538 0.24 -1.0 243,337 + MPMX19_05538 0.24 -0.3 243,337 + MPMX19_05538 0.24 +0.7 243,337 + MPMX19_05538 0.24 +0.2 243,337 + MPMX19_05538 0.24 -0.1 243,337 + MPMX19_05538 0.24 +1.7 243,337 + MPMX19_05538 0.24 -0.2 243,337 + MPMX19_05538 0.24 -2.5 243,337 + MPMX19_05538 0.24 +1.8 243,337 + MPMX19_05538 0.24 +1.2 243,337 + MPMX19_05538 0.24 -0.5 243,337 + MPMX19_05538 0.24 +0.9 243,337 + MPMX19_05538 0.24 -1.7 243,337 + MPMX19_05538 0.24 -0.2 243,337 + MPMX19_05538 0.24 +0.2 243,337 + MPMX19_05538 0.24 +1.2 243,338 - MPMX19_05538 0.24 +0.2 243,338 - MPMX19_05538 0.24 +0.1 243,338 - MPMX19_05538 0.24 -0.4 243,338 - MPMX19_05538 0.24 +1.0 243,338 - MPMX19_05538 0.24 -1.9 243,338 - MPMX19_05538 0.24 +1.3 243,338 - MPMX19_05538 0.24 +0.1 243,338 - MPMX19_05538 0.24 +0.2 243,338 - MPMX19_05538 0.24 -0.5 243,338 - MPMX19_05538 0.24 +1.0 243,338 - MPMX19_05538 0.24 -0.2 243,338 - MPMX19_05538 0.24 +0.6 243,338 - MPMX19_05538 0.24 -0.6 243,338 - MPMX19_05538 0.24 +0.4 243,338 - MPMX19_05538 0.24 -1.0 243,412 + MPMX19_05538 0.31 +0.8 243,413 - MPMX19_05538 0.31 -0.4 243,544 + MPMX19_05538 0.42 +0.1 243,545 - MPMX19_05538 0.42 +0.2 244,326 + +0.2 244,326 + +0.2 244,326 + -0.9 244,326 + +0.2 244,326 + +0.0 244,326 + -0.4 244,326 + -0.8 244,326 + -0.4 244,326 + -0.7 244,326 + -0.5 244,326 + -1.3 244,326 + +1.0 244,326 + +0.2 244,326 + -1.4 244,326 + -0.4 244,326 + -1.5 244,326 + -0.4 244,326 + -0.4 244,326 + -0.4 244,327 - +0.1 244,327 - -0.7 244,327 - -1.0 244,327 - -1.1 244,327 - -1.0 244,327 - -0.4 244,327 - +0.2 244,327 - -1.7 244,327 - -1.4 244,327 - +0.8 244,328 + -0.2 244,328 + -1.0 244,328 + +1.3 244,328 + -0.0 244,328 + -0.2 244,328 + -2.3 244,328 + -0.0 244,328 + +2.8 244,328 + +0.7 244,328 + -1.1 244,328 + +1.6 244,328 + -0.7 244,328 + -0.6 244,328 + +0.5 244,328 + +1.0 244,328 + -0.6 244,328 + -1.0 244,328 + -2.0 244,329 - +0.6 244,329 - -0.2 244,329 - -0.8 244,329 - -0.2 244,329 - -0.5 244,329 - -0.5 244,329 - -0.5 244,329 - +1.3 244,329 - -1.7 244,329 - -2.3 244,329 - +0.2 244,329 - -0.6 244,329 - -0.6 244,329 - -2.3 244,329 - +0.1 244,329 - -0.5 244,329 - -1.5 244,672 + MPMX19_05539 0.14 -1.3 244,672 + MPMX19_05539 0.14 -0.7 244,672 + MPMX19_05539 0.14 +0.2 244,672 + MPMX19_05539 0.14 +1.8 244,672 + MPMX19_05539 0.14 -0.9 244,673 - MPMX19_05539 0.14 -1.6 244,673 - MPMX19_05539 0.14 -1.4 244,673 - MPMX19_05539 0.14 -0.3 244,673 - MPMX19_05539 0.14 -2.8
Or see this region's nucleotide sequence