Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05471 and MPMX19_05472 are separated by 88 nucleotides MPMX19_05472 and MPMX19_05473 are separated by 244 nucleotides MPMX19_05473 and MPMX19_05474 overlap by 4 nucleotides MPMX19_05474 and MPMX19_05475 overlap by 4 nucleotides
MPMX19_05471: MPMX19_05471 - Thioredoxin 2, at 170,291 to 170,791
_05471
MPMX19_05472: MPMX19_05472 - hypothetical protein, at 170,880 to 171,134
_05472
MPMX19_05473: MPMX19_05473 - hypothetical protein, at 171,379 to 171,885
_05473
MPMX19_05474: MPMX19_05474 - hypothetical protein, at 171,882 to 172,325
_05474
MPMX19_05475: MPMX19_05475 - hypothetical protein, at 172,322 to 172,981
_05475
Position (kb) 171
172 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 170.566 kb on + strand, within MPMX19_05471 at 170.567 kb on - strand, within MPMX19_05471 at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.832 kb on + strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.833 kb on - strand at 170.881 kb on + strand at 170.882 kb on - strand at 170.882 kb on - strand at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.926 kb on + strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.927 kb on - strand, within MPMX19_05472 at 170.995 kb on + strand, within MPMX19_05472 at 170.995 kb on + strand, within MPMX19_05472 at 170.996 kb on - strand, within MPMX19_05472 at 171.052 kb on + strand, within MPMX19_05472 at 171.195 kb on + strand at 171.196 kb on - strand at 171.223 kb on - strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.239 kb on - strand at 171.239 kb on - strand at 171.239 kb on - strand at 171.299 kb on + strand at 171.299 kb on + strand at 171.299 kb on + strand at 171.299 kb on + strand at 171.299 kb on + strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.602 kb on + strand, within MPMX19_05473 at 171.602 kb on + strand, within MPMX19_05473 at 171.603 kb on - strand, within MPMX19_05473 at 171.603 kb on - strand, within MPMX19_05473 at 171.603 kb on - strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.623 kb on + strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.624 kb on - strand, within MPMX19_05473 at 171.726 kb on - strand, within MPMX19_05473 at 172.149 kb on + strand, within MPMX19_05474 at 172.150 kb on - strand, within MPMX19_05474 at 172.288 kb on + strand at 172.288 kb on + strand at 172.289 kb on - strand at 172.656 kb on + strand, within MPMX19_05475 at 172.656 kb on + strand, within MPMX19_05475
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 170,566 + MPMX19_05471 0.55 +1.2 170,567 - MPMX19_05471 0.55 -0.3 170,832 + +1.8 170,832 + -0.3 170,832 + +0.5 170,832 + +0.6 170,832 + +0.4 170,832 + -1.3 170,832 + -2.1 170,832 + -0.1 170,832 + -0.2 170,832 + +0.4 170,832 + +0.2 170,832 + -0.9 170,833 - -0.8 170,833 - -1.4 170,833 - -0.4 170,833 - -0.3 170,833 - -1.9 170,833 - -0.7 170,833 - -0.5 170,833 - +0.3 170,833 - +1.0 170,881 + -0.2 170,882 - -1.8 170,882 - -1.1 170,926 + MPMX19_05472 0.18 -1.0 170,926 + MPMX19_05472 0.18 -0.3 170,926 + MPMX19_05472 0.18 -0.8 170,926 + MPMX19_05472 0.18 -0.5 170,926 + MPMX19_05472 0.18 +1.3 170,926 + MPMX19_05472 0.18 -1.0 170,927 - MPMX19_05472 0.18 +2.8 170,927 - MPMX19_05472 0.18 -0.5 170,927 - MPMX19_05472 0.18 -1.4 170,927 - MPMX19_05472 0.18 -1.1 170,927 - MPMX19_05472 0.18 +0.0 170,927 - MPMX19_05472 0.18 -1.0 170,927 - MPMX19_05472 0.18 +1.4 170,995 + MPMX19_05472 0.45 -0.1 170,995 + MPMX19_05472 0.45 +0.1 170,996 - MPMX19_05472 0.45 -0.3 171,052 + MPMX19_05472 0.67 +1.8 171,195 + -0.4 171,196 - +0.1 171,223 - +1.8 171,238 + +0.4 171,238 + -0.7 171,238 + +0.1 171,238 + -1.7 171,239 - -2.0 171,239 - -0.8 171,239 - +0.5 171,299 + -0.9 171,299 + +0.6 171,299 + -0.7 171,299 + +1.5 171,299 + +0.2 171,300 - +1.2 171,300 - +0.2 171,300 - -0.5 171,300 - -0.4 171,300 - -0.2 171,300 - +0.3 171,602 + MPMX19_05473 0.44 -1.7 171,602 + MPMX19_05473 0.44 -0.9 171,603 - MPMX19_05473 0.44 -0.2 171,603 - MPMX19_05473 0.44 -0.8 171,603 - MPMX19_05473 0.44 -0.8 171,623 + MPMX19_05473 0.48 -1.7 171,623 + MPMX19_05473 0.48 -2.3 171,623 + MPMX19_05473 0.48 -0.5 171,623 + MPMX19_05473 0.48 -1.9 171,623 + MPMX19_05473 0.48 +0.7 171,623 + MPMX19_05473 0.48 +0.9 171,624 - MPMX19_05473 0.48 +0.3 171,624 - MPMX19_05473 0.48 -1.5 171,624 - MPMX19_05473 0.48 -0.2 171,624 - MPMX19_05473 0.48 +0.1 171,624 - MPMX19_05473 0.48 +0.2 171,726 - MPMX19_05473 0.68 -0.2 172,149 + MPMX19_05474 0.60 -1.0 172,150 - MPMX19_05474 0.60 -0.7 172,288 + -0.1 172,288 + -1.4 172,289 - +0.0 172,656 + MPMX19_05475 0.51 -2.1 172,656 + MPMX19_05475 0.51 -0.3
Or see this region's nucleotide sequence