Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05468 and MPMX19_05469 are separated by 191 nucleotides MPMX19_05469 and MPMX19_05470 are separated by 260 nucleotides
MPMX19_05468: MPMX19_05468 - Ribosomal RNA large subunit methyltransferase L, at 165,766 to 166,959
_05468
MPMX19_05469: MPMX19_05469 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 167,151 to 167,939
_05469
MPMX19_05470: MPMX19_05470 - hypothetical protein, at 168,200 to 170,269
_05470
Position (kb) 167
168 Strain fitness (log2 ratio) -2
-1
0
1
2 at 166.337 kb on + strand, within MPMX19_05468 at 166.338 kb on - strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.497 kb on + strand, within MPMX19_05468 at 166.498 kb on - strand, within MPMX19_05468 at 166.498 kb on - strand, within MPMX19_05468 at 166.498 kb on - strand, within MPMX19_05468 at 166.498 kb on - strand, within MPMX19_05468 at 166.498 kb on - strand, within MPMX19_05468 at 166.498 kb on - strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.622 kb on + strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.623 kb on - strand, within MPMX19_05468 at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.965 kb on + strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.966 kb on - strand at 166.969 kb on + strand at 166.969 kb on + strand at 166.969 kb on + strand at 166.969 kb on + strand at 166.969 kb on + strand at 166.970 kb on - strand at 166.970 kb on - strand at 166.970 kb on - strand at 166.970 kb on - strand at 166.970 kb on - strand at 167.066 kb on + strand at 167.066 kb on + strand at 167.066 kb on + strand at 167.067 kb on - strand at 167.210 kb on + strand at 167.210 kb on + strand at 167.211 kb on - strand at 167.649 kb on + strand, within MPMX19_05469 at 167.649 kb on + strand, within MPMX19_05469 at 167.650 kb on - strand, within MPMX19_05469 at 167.650 kb on - strand, within MPMX19_05469 at 167.650 kb on - strand, within MPMX19_05469 at 167.650 kb on - strand, within MPMX19_05469 at 167.650 kb on - strand, within MPMX19_05469 at 167.650 kb on - strand, within MPMX19_05469 at 167.772 kb on + strand, within MPMX19_05469 at 167.772 kb on + strand, within MPMX19_05469 at 167.772 kb on + strand, within MPMX19_05469 at 167.773 kb on - strand, within MPMX19_05469 at 167.773 kb on - strand, within MPMX19_05469 at 167.856 kb on + strand, within MPMX19_05469 at 167.856 kb on + strand, within MPMX19_05469 at 167.856 kb on + strand, within MPMX19_05469 at 167.856 kb on + strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.857 kb on - strand, within MPMX19_05469 at 167.890 kb on - strand at 167.890 kb on - strand at 167.908 kb on + strand at 168.105 kb on + strand at 168.106 kb on - strand at 168.106 kb on - strand at 168.110 kb on + strand at 168.110 kb on + strand at 168.110 kb on + strand at 168.110 kb on + strand at 168.110 kb on + strand at 168.111 kb on - strand at 168.111 kb on - strand at 168.111 kb on - strand at 168.293 kb on + strand at 168.293 kb on + strand at 168.293 kb on + strand at 168.293 kb on + strand at 168.294 kb on - strand at 168.294 kb on - strand at 168.294 kb on - strand at 168.294 kb on - strand at 168.294 kb on - strand at 168.294 kb on - strand at 168.386 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 166,337 + MPMX19_05468 0.48 -2.1 166,338 - MPMX19_05468 0.48 +0.6 166,497 + MPMX19_05468 0.61 +1.1 166,497 + MPMX19_05468 0.61 +0.2 166,497 + MPMX19_05468 0.61 -0.5 166,497 + MPMX19_05468 0.61 +0.7 166,497 + MPMX19_05468 0.61 +0.8 166,497 + MPMX19_05468 0.61 +0.3 166,497 + MPMX19_05468 0.61 +0.2 166,497 + MPMX19_05468 0.61 -1.4 166,497 + MPMX19_05468 0.61 +0.2 166,497 + MPMX19_05468 0.61 -0.8 166,497 + MPMX19_05468 0.61 +0.4 166,497 + MPMX19_05468 0.61 -1.7 166,497 + MPMX19_05468 0.61 -0.7 166,498 - MPMX19_05468 0.61 -0.1 166,498 - MPMX19_05468 0.61 -0.7 166,498 - MPMX19_05468 0.61 +0.4 166,498 - MPMX19_05468 0.61 +0.5 166,498 - MPMX19_05468 0.61 -0.4 166,498 - MPMX19_05468 0.61 +0.8 166,622 + MPMX19_05468 0.72 -1.7 166,622 + MPMX19_05468 0.72 -0.1 166,622 + MPMX19_05468 0.72 -0.1 166,622 + MPMX19_05468 0.72 -2.0 166,622 + MPMX19_05468 0.72 -0.4 166,622 + MPMX19_05468 0.72 -1.1 166,622 + MPMX19_05468 0.72 -1.4 166,622 + MPMX19_05468 0.72 -1.0 166,622 + MPMX19_05468 0.72 +0.0 166,622 + MPMX19_05468 0.72 -0.7 166,622 + MPMX19_05468 0.72 -0.5 166,622 + MPMX19_05468 0.72 +1.0 166,622 + MPMX19_05468 0.72 +0.6 166,622 + MPMX19_05468 0.72 -0.2 166,622 + MPMX19_05468 0.72 -2.0 166,622 + MPMX19_05468 0.72 -0.3 166,622 + MPMX19_05468 0.72 -1.8 166,622 + MPMX19_05468 0.72 -0.3 166,622 + MPMX19_05468 0.72 +1.3 166,622 + MPMX19_05468 0.72 -0.1 166,622 + MPMX19_05468 0.72 -1.2 166,622 + MPMX19_05468 0.72 +0.1 166,622 + MPMX19_05468 0.72 -1.3 166,623 - MPMX19_05468 0.72 -1.0 166,623 - MPMX19_05468 0.72 -0.4 166,623 - MPMX19_05468 0.72 -0.1 166,623 - MPMX19_05468 0.72 -1.7 166,623 - MPMX19_05468 0.72 +1.1 166,623 - MPMX19_05468 0.72 -1.0 166,623 - MPMX19_05468 0.72 +1.0 166,623 - MPMX19_05468 0.72 -1.4 166,623 - MPMX19_05468 0.72 +1.3 166,623 - MPMX19_05468 0.72 +1.0 166,623 - MPMX19_05468 0.72 +0.5 166,623 - MPMX19_05468 0.72 +0.2 166,623 - MPMX19_05468 0.72 -1.0 166,623 - MPMX19_05468 0.72 -0.6 166,623 - MPMX19_05468 0.72 -1.2 166,623 - MPMX19_05468 0.72 -0.4 166,623 - MPMX19_05468 0.72 -0.7 166,623 - MPMX19_05468 0.72 +0.3 166,623 - MPMX19_05468 0.72 -1.1 166,623 - MPMX19_05468 0.72 +0.0 166,623 - MPMX19_05468 0.72 -0.2 166,623 - MPMX19_05468 0.72 +0.1 166,623 - MPMX19_05468 0.72 -2.0 166,965 + -0.6 166,965 + -0.7 166,965 + +1.6 166,965 + -0.5 166,965 + +0.4 166,965 + +0.6 166,965 + -0.3 166,965 + -1.2 166,965 + +1.2 166,965 + +0.1 166,965 + -1.6 166,965 + +0.5 166,965 + +0.2 166,965 + -2.1 166,965 + +0.6 166,965 + -0.8 166,965 + -0.7 166,965 + -0.9 166,965 + +0.2 166,965 + +0.2 166,965 + -2.0 166,966 - -1.2 166,966 - -2.3 166,966 - -0.6 166,966 - +1.8 166,966 - -0.2 166,966 - -0.4 166,966 - -0.6 166,966 - +0.1 166,966 - +0.5 166,966 - -0.8 166,966 - -0.2 166,966 - -0.8 166,966 - -0.2 166,966 - +1.1 166,966 - -1.1 166,966 - -0.6 166,966 - +1.2 166,966 - +0.0 166,966 - -0.6 166,966 - -1.3 166,966 - -0.7 166,966 - +0.0 166,966 - -0.2 166,966 - -1.7 166,966 - -0.6 166,966 - -0.7 166,966 - -1.5 166,969 + -0.8 166,969 + -0.8 166,969 + -0.8 166,969 + -0.8 166,969 + -1.0 166,970 - -0.0 166,970 - -0.5 166,970 - -1.9 166,970 - -1.3 166,970 - +0.3 167,066 + -0.4 167,066 + +0.3 167,066 + -1.5 167,067 - -0.1 167,210 + -0.8 167,210 + -1.4 167,211 - -1.1 167,649 + MPMX19_05469 0.63 +0.1 167,649 + MPMX19_05469 0.63 +0.2 167,650 - MPMX19_05469 0.63 -1.2 167,650 - MPMX19_05469 0.63 -1.7 167,650 - MPMX19_05469 0.63 -0.7 167,650 - MPMX19_05469 0.63 +0.8 167,650 - MPMX19_05469 0.63 -1.1 167,650 - MPMX19_05469 0.63 +0.8 167,772 + MPMX19_05469 0.79 +2.2 167,772 + MPMX19_05469 0.79 -1.3 167,772 + MPMX19_05469 0.79 -2.5 167,773 - MPMX19_05469 0.79 -1.4 167,773 - MPMX19_05469 0.79 -1.4 167,856 + MPMX19_05469 0.89 +0.4 167,856 + MPMX19_05469 0.89 -1.8 167,856 + MPMX19_05469 0.89 -2.1 167,856 + MPMX19_05469 0.89 -1.0 167,857 - MPMX19_05469 0.89 -1.2 167,857 - MPMX19_05469 0.89 +0.2 167,857 - MPMX19_05469 0.89 -1.2 167,857 - MPMX19_05469 0.89 +0.8 167,857 - MPMX19_05469 0.89 +0.7 167,857 - MPMX19_05469 0.89 -0.8 167,857 - MPMX19_05469 0.89 +0.5 167,890 - +1.1 167,890 - -1.8 167,908 + -1.1 168,105 + -0.7 168,106 - +0.0 168,106 - -0.5 168,110 + -1.2 168,110 + +1.1 168,110 + -1.8 168,110 + -0.0 168,110 + +1.0 168,111 - +0.6 168,111 - -1.7 168,111 - +0.8 168,293 + -1.0 168,293 + -0.5 168,293 + +0.2 168,293 + -1.2 168,294 - -0.2 168,294 - -0.5 168,294 - +0.6 168,294 - +0.4 168,294 - -0.5 168,294 - -0.4 168,386 + +0.6
Or see this region's nucleotide sequence