Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05444 and MPMX19_05445 are separated by 55 nucleotides MPMX19_05445 and MPMX19_05446 are separated by 68 nucleotides MPMX19_05446 and MPMX19_05447 are separated by 46 nucleotides MPMX19_05447 and MPMX19_05448 are separated by 160 nucleotides
MPMX19_05444: MPMX19_05444 - Low specificity L-threonine aldolase, at 132,864 to 133,886
_05444
MPMX19_05445: MPMX19_05445 - tRNA-Glu, at 133,942 to 134,017
_05445
MPMX19_05446: MPMX19_05446 - tRNA-Glu, at 134,086 to 134,161
_05446
MPMX19_05447: MPMX19_05447 - tRNA-Glu, at 134,208 to 134,283
_05447
MPMX19_05448: MPMX19_05448 - DNA-invertase hin, at 134,444 to 135,007
_05448
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 132.954 kb on + strand at 132.954 kb on + strand at 132.954 kb on + strand at 132.955 kb on - strand at 133.086 kb on + strand, within MPMX19_05444 at 133.086 kb on + strand, within MPMX19_05444 at 133.087 kb on - strand, within MPMX19_05444 at 133.087 kb on - strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.311 kb on + strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.312 kb on - strand, within MPMX19_05444 at 133.313 kb on + strand, within MPMX19_05444 at 133.314 kb on - strand, within MPMX19_05444 at 133.314 kb on - strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.373 kb on + strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.374 kb on - strand, within MPMX19_05444 at 133.755 kb on + strand, within MPMX19_05444 at 133.755 kb on + strand, within MPMX19_05444 at 133.755 kb on + strand, within MPMX19_05444 at 133.756 kb on - strand, within MPMX19_05444 at 133.756 kb on - strand, within MPMX19_05444 at 133.791 kb on + strand at 133.791 kb on + strand at 133.792 kb on - strand at 133.792 kb on - strand at 133.792 kb on - strand at 133.792 kb on - strand at 133.792 kb on - strand at 133.792 kb on - strand at 133.792 kb on - strand at 133.792 kb on - strand at 133.792 kb on - strand at 133.792 kb on - strand at 133.792 kb on - strand at 133.868 kb on + strand at 133.885 kb on - strand at 133.954 kb on + strand, within MPMX19_05445 at 133.954 kb on + strand, within MPMX19_05445 at 133.954 kb on + strand, within MPMX19_05445 at 133.962 kb on + strand, within MPMX19_05445 at 133.962 kb on + strand, within MPMX19_05445 at 133.962 kb on + strand, within MPMX19_05445 at 134.099 kb on - strand, within MPMX19_05446 at 134.202 kb on + strand at 134.202 kb on + strand at 134.202 kb on + strand at 134.202 kb on + strand at 134.202 kb on + strand at 134.202 kb on + strand at 134.202 kb on + strand at 134.203 kb on - strand at 134.303 kb on + strand at 134.304 kb on - strand at 134.315 kb on - strand at 134.338 kb on + strand at 134.352 kb on - strand at 134.359 kb on + strand at 134.360 kb on - strand at 134.363 kb on + strand at 134.374 kb on + strand at 134.385 kb on + strand at 134.385 kb on + strand at 134.386 kb on - strand at 134.446 kb on - strand at 134.446 kb on - strand at 134.473 kb on + strand at 134.473 kb on + strand at 134.484 kb on + strand at 134.485 kb on - strand at 134.512 kb on + strand, within MPMX19_05448 at 134.512 kb on + strand, within MPMX19_05448 at 134.512 kb on + strand, within MPMX19_05448 at 134.595 kb on + strand, within MPMX19_05448 at 134.595 kb on + strand, within MPMX19_05448 at 134.595 kb on + strand, within MPMX19_05448 at 134.698 kb on + strand, within MPMX19_05448 at 134.716 kb on + strand, within MPMX19_05448 at 134.717 kb on - strand, within MPMX19_05448 at 134.762 kb on + strand, within MPMX19_05448 at 134.762 kb on + strand, within MPMX19_05448 at 134.762 kb on + strand, within MPMX19_05448 at 134.762 kb on + strand, within MPMX19_05448 at 134.763 kb on - strand, within MPMX19_05448 at 134.763 kb on - strand, within MPMX19_05448 at 134.763 kb on - strand, within MPMX19_05448 at 134.992 kb on - strand at 134.992 kb on - strand at 134.997 kb on + strand at 134.997 kb on + strand at 134.997 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 132,954 + -0.4 132,954 + -0.4 132,954 + +0.8 132,955 - -1.2 133,086 + MPMX19_05444 0.22 -3.1 133,086 + MPMX19_05444 0.22 -1.3 133,087 - MPMX19_05444 0.22 -2.0 133,087 - MPMX19_05444 0.22 -0.6 133,311 + MPMX19_05444 0.44 -1.2 133,311 + MPMX19_05444 0.44 +0.3 133,311 + MPMX19_05444 0.44 -1.8 133,311 + MPMX19_05444 0.44 -0.6 133,311 + MPMX19_05444 0.44 -0.2 133,311 + MPMX19_05444 0.44 -0.1 133,311 + MPMX19_05444 0.44 -1.3 133,311 + MPMX19_05444 0.44 -1.0 133,311 + MPMX19_05444 0.44 -1.5 133,311 + MPMX19_05444 0.44 -0.4 133,311 + MPMX19_05444 0.44 -0.8 133,311 + MPMX19_05444 0.44 -0.5 133,311 + MPMX19_05444 0.44 +1.2 133,312 - MPMX19_05444 0.44 +0.2 133,312 - MPMX19_05444 0.44 -0.8 133,312 - MPMX19_05444 0.44 +0.1 133,312 - MPMX19_05444 0.44 +0.8 133,312 - MPMX19_05444 0.44 -1.2 133,312 - MPMX19_05444 0.44 -0.1 133,312 - MPMX19_05444 0.44 -0.3 133,312 - MPMX19_05444 0.44 +1.0 133,312 - MPMX19_05444 0.44 -1.0 133,312 - MPMX19_05444 0.44 -0.2 133,312 - MPMX19_05444 0.44 -0.1 133,312 - MPMX19_05444 0.44 +1.3 133,312 - MPMX19_05444 0.44 -1.1 133,312 - MPMX19_05444 0.44 +1.0 133,313 + MPMX19_05444 0.44 +1.5 133,314 - MPMX19_05444 0.44 -0.1 133,314 - MPMX19_05444 0.44 -0.2 133,373 + MPMX19_05444 0.50 -0.1 133,373 + MPMX19_05444 0.50 -2.6 133,373 + MPMX19_05444 0.50 +0.1 133,373 + MPMX19_05444 0.50 -0.4 133,373 + MPMX19_05444 0.50 -0.8 133,373 + MPMX19_05444 0.50 +0.2 133,373 + MPMX19_05444 0.50 +0.9 133,373 + MPMX19_05444 0.50 -1.8 133,373 + MPMX19_05444 0.50 -0.7 133,373 + MPMX19_05444 0.50 -1.7 133,373 + MPMX19_05444 0.50 -0.8 133,374 - MPMX19_05444 0.50 -0.2 133,374 - MPMX19_05444 0.50 +1.1 133,374 - MPMX19_05444 0.50 -1.5 133,374 - MPMX19_05444 0.50 -1.3 133,374 - MPMX19_05444 0.50 -0.1 133,374 - MPMX19_05444 0.50 -1.7 133,374 - MPMX19_05444 0.50 +0.0 133,374 - MPMX19_05444 0.50 -0.5 133,374 - MPMX19_05444 0.50 +1.2 133,755 + MPMX19_05444 0.87 -0.9 133,755 + MPMX19_05444 0.87 +1.3 133,755 + MPMX19_05444 0.87 -1.1 133,756 - MPMX19_05444 0.87 +1.1 133,756 - MPMX19_05444 0.87 -0.4 133,791 + -1.0 133,791 + -0.7 133,792 - -2.5 133,792 - +0.8 133,792 - +0.8 133,792 - -2.7 133,792 - -0.8 133,792 - -1.7 133,792 - -0.5 133,792 - -0.6 133,792 - +2.4 133,792 - +0.5 133,792 - -0.9 133,868 + +0.7 133,885 - -2.4 133,954 + MPMX19_05445 0.16 -1.4 133,954 + MPMX19_05445 0.16 -0.3 133,954 + MPMX19_05445 0.16 -0.6 133,962 + MPMX19_05445 0.26 -0.7 133,962 + MPMX19_05445 0.26 -1.2 133,962 + MPMX19_05445 0.26 -1.4 134,099 - MPMX19_05446 0.17 -1.2 134,202 + +0.0 134,202 + -1.7 134,202 + -1.0 134,202 + -2.2 134,202 + -0.3 134,202 + +0.1 134,202 + -0.2 134,203 - +1.3 134,303 + -0.5 134,304 - +0.1 134,315 - -1.4 134,338 + +0.4 134,352 - -0.1 134,359 + +0.5 134,360 - -1.4 134,363 + +1.5 134,374 + -0.5 134,385 + -0.5 134,385 + -0.9 134,386 - -0.5 134,446 - -2.9 134,446 - +0.0 134,473 + -1.3 134,473 + -1.2 134,484 + -0.6 134,485 - -0.8 134,512 + MPMX19_05448 0.12 +0.6 134,512 + MPMX19_05448 0.12 +0.6 134,512 + MPMX19_05448 0.12 -0.5 134,595 + MPMX19_05448 0.27 -0.2 134,595 + MPMX19_05448 0.27 -1.2 134,595 + MPMX19_05448 0.27 -1.2 134,698 + MPMX19_05448 0.45 +0.7 134,716 + MPMX19_05448 0.48 +0.2 134,717 - MPMX19_05448 0.48 +0.8 134,762 + MPMX19_05448 0.56 -0.5 134,762 + MPMX19_05448 0.56 +0.2 134,762 + MPMX19_05448 0.56 -1.5 134,762 + MPMX19_05448 0.56 -1.2 134,763 - MPMX19_05448 0.57 -0.2 134,763 - MPMX19_05448 0.57 -1.4 134,763 - MPMX19_05448 0.57 -0.2 134,992 - -0.2 134,992 - -0.2 134,997 + +1.8 134,997 + -1.1 134,997 + -0.1
Or see this region's nucleotide sequence