Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05369 and MPMX19_05370 are separated by 137 nucleotides MPMX19_05370 and MPMX19_05371 are separated by 85 nucleotides MPMX19_05371 and MPMX19_05372 are separated by 4 nucleotides MPMX19_05372 and MPMX19_05373 are separated by 159 nucleotides
MPMX19_05369: MPMX19_05369 - hypothetical protein, at 43,052 to 43,216
_05369
MPMX19_05370: MPMX19_05370 - hypothetical protein, at 43,354 to 43,962
_05370
MPMX19_05371: MPMX19_05371 - hypothetical protein, at 44,048 to 44,941
_05371
MPMX19_05372: MPMX19_05372 - Cell division ATP-binding protein FtsE, at 44,946 to 45,683
_05372
MPMX19_05373: MPMX19_05373 - hypothetical protein, at 45,843 to 46,625
_05373
Position (kb) 44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 43.053 kb on + strand at 43.053 kb on + strand at 43.053 kb on + strand at 43.053 kb on + strand at 43.054 kb on - strand at 43.054 kb on - strand at 43.054 kb on - strand at 43.054 kb on - strand at 43.054 kb on - strand at 43.098 kb on + strand, within MPMX19_05369 at 43.098 kb on + strand, within MPMX19_05369 at 43.098 kb on + strand, within MPMX19_05369 at 43.099 kb on - strand, within MPMX19_05369 at 43.285 kb on + strand at 43.285 kb on + strand at 43.285 kb on + strand at 43.286 kb on - strand at 43.286 kb on - strand at 43.412 kb on + strand at 43.412 kb on + strand at 43.412 kb on + strand at 43.412 kb on + strand at 43.412 kb on + strand at 43.413 kb on - strand at 43.413 kb on - strand at 43.413 kb on - strand at 43.413 kb on - strand at 43.413 kb on - strand at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.553 kb on + strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.554 kb on - strand, within MPMX19_05370 at 43.616 kb on + strand, within MPMX19_05370 at 43.616 kb on + strand, within MPMX19_05370 at 43.616 kb on + strand, within MPMX19_05370 at 43.616 kb on + strand, within MPMX19_05370 at 43.616 kb on + strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.617 kb on - strand, within MPMX19_05370 at 43.646 kb on + strand, within MPMX19_05370 at 43.646 kb on + strand, within MPMX19_05370 at 43.647 kb on - strand, within MPMX19_05370 at 43.647 kb on - strand, within MPMX19_05370 at 43.647 kb on - strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.727 kb on + strand, within MPMX19_05370 at 43.728 kb on - strand, within MPMX19_05370 at 43.728 kb on - strand, within MPMX19_05370 at 43.728 kb on - strand, within MPMX19_05370 at 43.728 kb on - strand, within MPMX19_05370 at 43.884 kb on - strand, within MPMX19_05370 at 43.884 kb on - strand, within MPMX19_05370 at 43.884 kb on - strand, within MPMX19_05370 at 43.884 kb on - strand, within MPMX19_05370 at 44.102 kb on + strand at 44.102 kb on + strand at 44.102 kb on + strand at 44.102 kb on + strand at 44.102 kb on + strand at 44.103 kb on - strand at 44.103 kb on - strand at 44.103 kb on - strand at 44.214 kb on + strand, within MPMX19_05371 at 44.214 kb on + strand, within MPMX19_05371 at 44.214 kb on + strand, within MPMX19_05371 at 44.214 kb on + strand, within MPMX19_05371 at 44.215 kb on - strand, within MPMX19_05371 at 44.215 kb on - strand, within MPMX19_05371 at 44.215 kb on - strand, within MPMX19_05371 at 44.215 kb on - strand, within MPMX19_05371 at 44.215 kb on - strand, within MPMX19_05371 at 44.215 kb on - strand, within MPMX19_05371 at 44.215 kb on - strand, within MPMX19_05371 at 44.215 kb on - strand, within MPMX19_05371 at 44.215 kb on - strand, within MPMX19_05371 at 44.301 kb on + strand, within MPMX19_05371 at 44.301 kb on + strand, within MPMX19_05371 at 44.301 kb on + strand, within MPMX19_05371 at 44.301 kb on + strand, within MPMX19_05371 at 44.301 kb on + strand, within MPMX19_05371 at 44.301 kb on + strand, within MPMX19_05371 at 44.301 kb on + strand, within MPMX19_05371 at 44.301 kb on + strand, within MPMX19_05371 at 44.302 kb on - strand, within MPMX19_05371 at 44.302 kb on - strand, within MPMX19_05371 at 44.302 kb on - strand, within MPMX19_05371 at 44.302 kb on - strand, within MPMX19_05371 at 44.302 kb on - strand, within MPMX19_05371 at 44.302 kb on - strand, within MPMX19_05371 at 44.947 kb on + strand at 44.948 kb on - strand at 44.948 kb on - strand at 44.948 kb on - strand at 44.988 kb on + strand at 44.988 kb on + strand at 44.988 kb on + strand at 44.988 kb on + strand at 44.988 kb on + strand at 44.988 kb on + strand at 44.988 kb on + strand at 44.989 kb on - strand at 44.989 kb on - strand at 44.989 kb on - strand at 44.989 kb on - strand at 44.989 kb on - strand at 44.989 kb on - strand at 44.989 kb on - strand at 44.989 kb on - strand at 44.989 kb on - strand at 44.989 kb on - strand at 44.989 kb on - strand at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.133 kb on + strand, within MPMX19_05372 at 45.134 kb on - strand, within MPMX19_05372 at 45.134 kb on - strand, within MPMX19_05372 at 45.134 kb on - strand, within MPMX19_05372 at 45.134 kb on - strand, within MPMX19_05372 at 45.134 kb on - strand, within MPMX19_05372 at 45.134 kb on - strand, within MPMX19_05372 at 45.134 kb on - strand, within MPMX19_05372 at 45.134 kb on - strand, within MPMX19_05372 at 45.134 kb on - strand, within MPMX19_05372 at 45.151 kb on + strand, within MPMX19_05372 at 45.151 kb on + strand, within MPMX19_05372 at 45.151 kb on + strand, within MPMX19_05372 at 45.151 kb on + strand, within MPMX19_05372 at 45.151 kb on + strand, within MPMX19_05372 at 45.152 kb on - strand, within MPMX19_05372 at 45.152 kb on - strand, within MPMX19_05372 at 45.152 kb on - strand, within MPMX19_05372 at 45.152 kb on - strand, within MPMX19_05372 at 45.152 kb on - strand, within MPMX19_05372 at 45.152 kb on - strand, within MPMX19_05372 at 45.152 kb on - strand, within MPMX19_05372 at 45.538 kb on + strand, within MPMX19_05372 at 45.538 kb on + strand, within MPMX19_05372 at 45.538 kb on + strand, within MPMX19_05372 at 45.538 kb on + strand, within MPMX19_05372 at 45.538 kb on + strand, within MPMX19_05372 at 45.538 kb on + strand, within MPMX19_05372 at 45.538 kb on + strand, within MPMX19_05372 at 45.538 kb on + strand, within MPMX19_05372 at 45.538 kb on + strand, within MPMX19_05372 at 45.538 kb on + strand, within MPMX19_05372 at 45.538 kb on + strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.539 kb on - strand, within MPMX19_05372 at 45.652 kb on + strand at 45.653 kb on - strand at 45.804 kb on + strand at 45.805 kb on - strand at 45.805 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 43,053 + -1.9 43,053 + -2.2 43,053 + -0.7 43,053 + -1.0 43,054 - -0.7 43,054 - -0.1 43,054 - -2.0 43,054 - -1.6 43,054 - +1.1 43,098 + MPMX19_05369 0.28 -0.8 43,098 + MPMX19_05369 0.28 -0.2 43,098 + MPMX19_05369 0.28 +1.0 43,099 - MPMX19_05369 0.28 -1.9 43,285 + +0.8 43,285 + -1.5 43,285 + -1.2 43,286 - -0.5 43,286 - -1.7 43,412 + -1.3 43,412 + -0.3 43,412 + -0.1 43,412 + -0.4 43,412 + -0.7 43,413 - +0.1 43,413 - +1.4 43,413 - +0.1 43,413 - +0.6 43,413 - -1.2 43,553 + MPMX19_05370 0.33 -1.2 43,553 + MPMX19_05370 0.33 -0.9 43,553 + MPMX19_05370 0.33 -0.5 43,553 + MPMX19_05370 0.33 +0.9 43,553 + MPMX19_05370 0.33 -1.2 43,553 + MPMX19_05370 0.33 -0.9 43,553 + MPMX19_05370 0.33 +0.2 43,553 + MPMX19_05370 0.33 +1.2 43,553 + MPMX19_05370 0.33 -0.4 43,553 + MPMX19_05370 0.33 -1.8 43,553 + MPMX19_05370 0.33 -0.5 43,553 + MPMX19_05370 0.33 +0.0 43,554 - MPMX19_05370 0.33 -0.1 43,554 - MPMX19_05370 0.33 -1.5 43,554 - MPMX19_05370 0.33 +0.5 43,554 - MPMX19_05370 0.33 -2.2 43,554 - MPMX19_05370 0.33 -1.0 43,554 - MPMX19_05370 0.33 -0.7 43,554 - MPMX19_05370 0.33 -0.8 43,554 - MPMX19_05370 0.33 +0.1 43,554 - MPMX19_05370 0.33 +0.1 43,554 - MPMX19_05370 0.33 +0.4 43,554 - MPMX19_05370 0.33 +0.7 43,554 - MPMX19_05370 0.33 -0.8 43,554 - MPMX19_05370 0.33 +0.0 43,554 - MPMX19_05370 0.33 -0.1 43,554 - MPMX19_05370 0.33 +0.7 43,554 - MPMX19_05370 0.33 -0.1 43,554 - MPMX19_05370 0.33 -0.6 43,554 - MPMX19_05370 0.33 -1.8 43,554 - MPMX19_05370 0.33 -1.3 43,554 - MPMX19_05370 0.33 -1.0 43,554 - MPMX19_05370 0.33 +0.7 43,554 - MPMX19_05370 0.33 -0.5 43,554 - MPMX19_05370 0.33 -0.2 43,554 - MPMX19_05370 0.33 -1.8 43,554 - MPMX19_05370 0.33 +0.0 43,554 - MPMX19_05370 0.33 +0.0 43,554 - MPMX19_05370 0.33 +0.1 43,616 + MPMX19_05370 0.43 +0.8 43,616 + MPMX19_05370 0.43 -2.6 43,616 + MPMX19_05370 0.43 -0.7 43,616 + MPMX19_05370 0.43 -0.2 43,616 + MPMX19_05370 0.43 +0.5 43,617 - MPMX19_05370 0.43 -1.9 43,617 - MPMX19_05370 0.43 +0.6 43,617 - MPMX19_05370 0.43 +0.2 43,617 - MPMX19_05370 0.43 +0.8 43,617 - MPMX19_05370 0.43 -0.3 43,617 - MPMX19_05370 0.43 +0.6 43,617 - MPMX19_05370 0.43 -0.1 43,617 - MPMX19_05370 0.43 -0.3 43,617 - MPMX19_05370 0.43 -1.5 43,617 - MPMX19_05370 0.43 -0.2 43,617 - MPMX19_05370 0.43 -0.7 43,646 + MPMX19_05370 0.48 +0.8 43,646 + MPMX19_05370 0.48 +1.1 43,647 - MPMX19_05370 0.48 -0.0 43,647 - MPMX19_05370 0.48 -0.2 43,647 - MPMX19_05370 0.48 -1.9 43,727 + MPMX19_05370 0.61 +0.7 43,727 + MPMX19_05370 0.61 -1.9 43,727 + MPMX19_05370 0.61 -0.3 43,727 + MPMX19_05370 0.61 -0.5 43,727 + MPMX19_05370 0.61 +0.3 43,727 + MPMX19_05370 0.61 +1.0 43,727 + MPMX19_05370 0.61 -0.1 43,728 - MPMX19_05370 0.61 -0.4 43,728 - MPMX19_05370 0.61 -0.4 43,728 - MPMX19_05370 0.61 -2.5 43,728 - MPMX19_05370 0.61 +0.8 43,884 - MPMX19_05370 0.87 -1.3 43,884 - MPMX19_05370 0.87 -0.5 43,884 - MPMX19_05370 0.87 -0.3 43,884 - MPMX19_05370 0.87 -0.8 44,102 + -1.5 44,102 + -0.4 44,102 + -2.2 44,102 + +0.1 44,102 + +0.5 44,103 - -0.2 44,103 - +0.2 44,103 - -0.6 44,214 + MPMX19_05371 0.19 -0.1 44,214 + MPMX19_05371 0.19 +0.4 44,214 + MPMX19_05371 0.19 -1.1 44,214 + MPMX19_05371 0.19 +0.0 44,215 - MPMX19_05371 0.19 +0.0 44,215 - MPMX19_05371 0.19 +0.5 44,215 - MPMX19_05371 0.19 -1.4 44,215 - MPMX19_05371 0.19 +0.8 44,215 - MPMX19_05371 0.19 -0.3 44,215 - MPMX19_05371 0.19 +0.0 44,215 - MPMX19_05371 0.19 -0.2 44,215 - MPMX19_05371 0.19 -2.1 44,215 - MPMX19_05371 0.19 -1.0 44,301 + MPMX19_05371 0.28 -0.5 44,301 + MPMX19_05371 0.28 -1.4 44,301 + MPMX19_05371 0.28 -0.9 44,301 + MPMX19_05371 0.28 +0.1 44,301 + MPMX19_05371 0.28 -1.1 44,301 + MPMX19_05371 0.28 -0.1 44,301 + MPMX19_05371 0.28 +0.5 44,301 + MPMX19_05371 0.28 -0.4 44,302 - MPMX19_05371 0.28 -1.0 44,302 - MPMX19_05371 0.28 +1.2 44,302 - MPMX19_05371 0.28 +0.5 44,302 - MPMX19_05371 0.28 +0.6 44,302 - MPMX19_05371 0.28 +0.9 44,302 - MPMX19_05371 0.28 +0.8 44,947 + -1.7 44,948 - -2.8 44,948 - -0.3 44,948 - +0.6 44,988 + -0.2 44,988 + -0.4 44,988 + -1.1 44,988 + -0.6 44,988 + +0.0 44,988 + -1.3 44,988 + +0.0 44,989 - -0.9 44,989 - -0.7 44,989 - +0.4 44,989 - -0.5 44,989 - -1.8 44,989 - -1.2 44,989 - -0.8 44,989 - -0.8 44,989 - +0.0 44,989 - -0.7 44,989 - -1.5 45,133 + MPMX19_05372 0.25 -1.4 45,133 + MPMX19_05372 0.25 -1.4 45,133 + MPMX19_05372 0.25 -0.4 45,133 + MPMX19_05372 0.25 -1.1 45,133 + MPMX19_05372 0.25 +1.0 45,133 + MPMX19_05372 0.25 -0.5 45,133 + MPMX19_05372 0.25 -0.3 45,133 + MPMX19_05372 0.25 +0.1 45,133 + MPMX19_05372 0.25 -0.2 45,133 + MPMX19_05372 0.25 -1.1 45,133 + MPMX19_05372 0.25 -0.3 45,133 + MPMX19_05372 0.25 -0.7 45,133 + MPMX19_05372 0.25 -0.8 45,133 + MPMX19_05372 0.25 -1.8 45,133 + MPMX19_05372 0.25 -0.6 45,134 - MPMX19_05372 0.25 -2.1 45,134 - MPMX19_05372 0.25 -0.7 45,134 - MPMX19_05372 0.25 -0.5 45,134 - MPMX19_05372 0.25 +0.8 45,134 - MPMX19_05372 0.25 -1.5 45,134 - MPMX19_05372 0.25 -0.2 45,134 - MPMX19_05372 0.25 -0.8 45,134 - MPMX19_05372 0.25 -1.4 45,134 - MPMX19_05372 0.25 +0.2 45,151 + MPMX19_05372 0.28 -1.2 45,151 + MPMX19_05372 0.28 -1.0 45,151 + MPMX19_05372 0.28 -0.2 45,151 + MPMX19_05372 0.28 +0.0 45,151 + MPMX19_05372 0.28 -0.6 45,152 - MPMX19_05372 0.28 -0.2 45,152 - MPMX19_05372 0.28 -1.2 45,152 - MPMX19_05372 0.28 -1.5 45,152 - MPMX19_05372 0.28 +0.8 45,152 - MPMX19_05372 0.28 -2.4 45,152 - MPMX19_05372 0.28 -0.8 45,152 - MPMX19_05372 0.28 -1.7 45,538 + MPMX19_05372 0.80 -0.8 45,538 + MPMX19_05372 0.80 -2.3 45,538 + MPMX19_05372 0.80 -0.7 45,538 + MPMX19_05372 0.80 +0.0 45,538 + MPMX19_05372 0.80 -0.2 45,538 + MPMX19_05372 0.80 -2.1 45,538 + MPMX19_05372 0.80 -1.8 45,538 + MPMX19_05372 0.80 -1.5 45,538 + MPMX19_05372 0.80 -0.2 45,538 + MPMX19_05372 0.80 -0.7 45,538 + MPMX19_05372 0.80 +0.1 45,539 - MPMX19_05372 0.80 -1.0 45,539 - MPMX19_05372 0.80 +0.5 45,539 - MPMX19_05372 0.80 +0.1 45,539 - MPMX19_05372 0.80 +3.4 45,539 - MPMX19_05372 0.80 +0.5 45,539 - MPMX19_05372 0.80 -0.1 45,539 - MPMX19_05372 0.80 +0.6 45,539 - MPMX19_05372 0.80 -0.4 45,539 - MPMX19_05372 0.80 -1.9 45,539 - MPMX19_05372 0.80 +1.1 45,539 - MPMX19_05372 0.80 -0.4 45,539 - MPMX19_05372 0.80 -1.2 45,539 - MPMX19_05372 0.80 -1.7 45,539 - MPMX19_05372 0.80 -1.2 45,539 - MPMX19_05372 0.80 +0.5 45,652 + +0.8 45,653 - +0.8 45,804 + -2.1 45,805 - -2.3 45,805 - -1.8
Or see this region's nucleotide sequence