Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05267 and MPMX19_05268 overlap by 4 nucleotides MPMX19_05268 and MPMX19_05269 overlap by 4 nucleotides MPMX19_05269 and MPMX19_05270 are separated by 30 nucleotides MPMX19_05270 and MPMX19_05271 are separated by 95 nucleotides MPMX19_05271 and MPMX19_05272 are separated by 20 nucleotides
MPMX19_05267: MPMX19_05267 - Kynureninase, at 802,066 to 803,259
_05267
MPMX19_05268: MPMX19_05268 - Tryptophan 2,3-dioxygenase, at 803,256 to 804,107
_05268
MPMX19_05269: MPMX19_05269 - hypothetical protein, at 804,104 to 804,937
_05269
MPMX19_05270: MPMX19_05270 - hypothetical protein, at 804,968 to 805,495
_05270
MPMX19_05271: MPMX19_05271 - hypothetical protein, at 805,591 to 805,746
_05271
MPMX19_05272: MPMX19_05272 - hypothetical protein, at 805,767 to 806,069
_05272
Position (kb) 804
805 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.152 kb on + strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.153 kb on - strand at 803.155 kb on - strand at 803.155 kb on - strand at 803.233 kb on + strand at 803.233 kb on + strand at 803.234 kb on - strand at 803.271 kb on - strand at 803.283 kb on + strand at 803.283 kb on + strand at 803.283 kb on + strand at 803.283 kb on + strand at 803.284 kb on - strand at 803.334 kb on + strand at 803.335 kb on - strand at 803.343 kb on + strand, within MPMX19_05268 at 803.343 kb on + strand, within MPMX19_05268 at 803.344 kb on - strand, within MPMX19_05268 at 803.344 kb on - strand, within MPMX19_05268 at 803.344 kb on - strand, within MPMX19_05268 at 803.344 kb on - strand, within MPMX19_05268 at 803.344 kb on - strand, within MPMX19_05268 at 803.344 kb on - strand, within MPMX19_05268 at 803.347 kb on + strand, within MPMX19_05268 at 803.347 kb on + strand, within MPMX19_05268 at 803.347 kb on + strand, within MPMX19_05268 at 803.347 kb on + strand, within MPMX19_05268 at 803.348 kb on - strand, within MPMX19_05268 at 803.348 kb on - strand, within MPMX19_05268 at 803.348 kb on - strand, within MPMX19_05268 at 803.387 kb on + strand, within MPMX19_05268 at 803.387 kb on + strand, within MPMX19_05268 at 803.388 kb on - strand, within MPMX19_05268 at 803.388 kb on - strand, within MPMX19_05268 at 803.388 kb on - strand, within MPMX19_05268 at 803.388 kb on - strand, within MPMX19_05268 at 803.388 kb on - strand, within MPMX19_05268 at 803.388 kb on - strand, within MPMX19_05268 at 803.457 kb on + strand, within MPMX19_05268 at 803.457 kb on + strand, within MPMX19_05268 at 803.457 kb on + strand, within MPMX19_05268 at 803.457 kb on + strand, within MPMX19_05268 at 803.458 kb on - strand, within MPMX19_05268 at 803.458 kb on - strand, within MPMX19_05268 at 803.458 kb on - strand, within MPMX19_05268 at 803.458 kb on - strand, within MPMX19_05268 at 803.458 kb on - strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.595 kb on + strand, within MPMX19_05268 at 803.596 kb on - strand, within MPMX19_05268 at 803.596 kb on - strand, within MPMX19_05268 at 803.596 kb on - strand, within MPMX19_05268 at 803.596 kb on - strand, within MPMX19_05268 at 803.643 kb on + strand, within MPMX19_05268 at 803.643 kb on + strand, within MPMX19_05268 at 803.644 kb on - strand, within MPMX19_05268 at 803.763 kb on + strand, within MPMX19_05268 at 803.763 kb on + strand, within MPMX19_05268 at 803.763 kb on + strand, within MPMX19_05268 at 803.763 kb on + strand, within MPMX19_05268 at 803.763 kb on + strand, within MPMX19_05268 at 803.763 kb on + strand, within MPMX19_05268 at 803.764 kb on - strand, within MPMX19_05268 at 803.764 kb on - strand, within MPMX19_05268 at 803.886 kb on + strand, within MPMX19_05268 at 803.886 kb on + strand, within MPMX19_05268 at 803.886 kb on + strand, within MPMX19_05268 at 803.886 kb on + strand, within MPMX19_05268 at 803.886 kb on + strand, within MPMX19_05268 at 803.886 kb on + strand, within MPMX19_05268 at 803.887 kb on - strand, within MPMX19_05268 at 803.887 kb on - strand, within MPMX19_05268 at 803.887 kb on - strand, within MPMX19_05268 at 803.887 kb on - strand, within MPMX19_05268 at 803.916 kb on + strand, within MPMX19_05268 at 803.916 kb on + strand, within MPMX19_05268 at 803.916 kb on + strand, within MPMX19_05268 at 803.952 kb on + strand, within MPMX19_05268 at 803.952 kb on + strand, within MPMX19_05268 at 803.952 kb on + strand, within MPMX19_05268 at 803.953 kb on - strand, within MPMX19_05268 at 803.953 kb on - strand, within MPMX19_05268 at 803.953 kb on - strand, within MPMX19_05268 at 803.953 kb on - strand, within MPMX19_05268 at 803.953 kb on - strand, within MPMX19_05268 at 803.953 kb on - strand, within MPMX19_05268 at 804.042 kb on + strand at 804.042 kb on + strand at 804.042 kb on + strand at 804.143 kb on + strand at 804.143 kb on + strand at 804.144 kb on - strand at 804.144 kb on - strand at 804.144 kb on - strand at 804.144 kb on - strand at 804.180 kb on - strand at 804.260 kb on + strand, within MPMX19_05269 at 804.284 kb on + strand, within MPMX19_05269 at 804.284 kb on + strand, within MPMX19_05269 at 804.284 kb on + strand, within MPMX19_05269 at 804.284 kb on + strand, within MPMX19_05269 at 804.285 kb on - strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.428 kb on + strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.429 kb on - strand, within MPMX19_05269 at 804.935 kb on + strand at 804.969 kb on + strand at 804.969 kb on + strand at 804.970 kb on - strand at 804.970 kb on - strand at 804.994 kb on - strand at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.546 kb on + strand at 805.547 kb on - strand at 805.547 kb on - strand at 805.547 kb on - strand at 805.599 kb on + strand at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 803,152 + +0.3 803,152 + +0.5 803,152 + +0.8 803,152 + -0.3 803,152 + -0.1 803,152 + -0.7 803,152 + +0.8 803,152 + +1.1 803,152 + -0.0 803,152 + -0.2 803,152 + +0.5 803,152 + +1.1 803,152 + +0.7 803,152 + -0.4 803,152 + -1.5 803,152 + +0.1 803,152 + -0.0 803,152 + +1.0 803,152 + +0.8 803,153 - -1.8 803,153 - -1.1 803,153 - -1.3 803,153 - -2.0 803,153 - -2.0 803,153 - +1.0 803,153 - -2.1 803,153 - -2.9 803,153 - +0.1 803,153 - -0.9 803,153 - +0.1 803,153 - -0.5 803,153 - +1.7 803,153 - -0.6 803,153 - -0.5 803,155 - +0.1 803,155 - +0.2 803,233 + +1.9 803,233 + +0.3 803,234 - -1.1 803,271 - +0.4 803,283 + -1.8 803,283 + -0.1 803,283 + -1.2 803,283 + +0.1 803,284 - +3.1 803,334 + +1.3 803,335 - -0.2 803,343 + MPMX19_05268 0.10 +1.7 803,343 + MPMX19_05268 0.10 -1.5 803,344 - MPMX19_05268 0.10 -0.1 803,344 - MPMX19_05268 0.10 -0.8 803,344 - MPMX19_05268 0.10 -1.0 803,344 - MPMX19_05268 0.10 +0.9 803,344 - MPMX19_05268 0.10 -2.2 803,344 - MPMX19_05268 0.10 +0.1 803,347 + MPMX19_05268 0.11 -1.8 803,347 + MPMX19_05268 0.11 -0.3 803,347 + MPMX19_05268 0.11 -1.5 803,347 + MPMX19_05268 0.11 +1.7 803,348 - MPMX19_05268 0.11 -0.1 803,348 - MPMX19_05268 0.11 -2.1 803,348 - MPMX19_05268 0.11 +0.7 803,387 + MPMX19_05268 0.15 -0.6 803,387 + MPMX19_05268 0.15 -0.0 803,388 - MPMX19_05268 0.15 +1.1 803,388 - MPMX19_05268 0.15 -1.3 803,388 - MPMX19_05268 0.15 -0.6 803,388 - MPMX19_05268 0.15 +0.7 803,388 - MPMX19_05268 0.15 +1.2 803,388 - MPMX19_05268 0.15 -1.9 803,457 + MPMX19_05268 0.24 -0.9 803,457 + MPMX19_05268 0.24 -0.1 803,457 + MPMX19_05268 0.24 -0.2 803,457 + MPMX19_05268 0.24 +1.0 803,458 - MPMX19_05268 0.24 -0.7 803,458 - MPMX19_05268 0.24 -0.8 803,458 - MPMX19_05268 0.24 -1.3 803,458 - MPMX19_05268 0.24 +2.0 803,458 - MPMX19_05268 0.24 +0.1 803,595 + MPMX19_05268 0.40 -0.1 803,595 + MPMX19_05268 0.40 -0.0 803,595 + MPMX19_05268 0.40 -0.9 803,595 + MPMX19_05268 0.40 -0.6 803,595 + MPMX19_05268 0.40 +1.2 803,595 + MPMX19_05268 0.40 +0.1 803,595 + MPMX19_05268 0.40 -2.8 803,596 - MPMX19_05268 0.40 -0.1 803,596 - MPMX19_05268 0.40 +4.8 803,596 - MPMX19_05268 0.40 -0.7 803,596 - MPMX19_05268 0.40 -1.3 803,643 + MPMX19_05268 0.45 -1.2 803,643 + MPMX19_05268 0.45 -0.7 803,644 - MPMX19_05268 0.46 +0.1 803,763 + MPMX19_05268 0.60 -1.0 803,763 + MPMX19_05268 0.60 -0.2 803,763 + MPMX19_05268 0.60 +0.7 803,763 + MPMX19_05268 0.60 +1.4 803,763 + MPMX19_05268 0.60 -0.7 803,763 + MPMX19_05268 0.60 -0.3 803,764 - MPMX19_05268 0.60 -2.9 803,764 - MPMX19_05268 0.60 -1.2 803,886 + MPMX19_05268 0.74 +0.1 803,886 + MPMX19_05268 0.74 +0.7 803,886 + MPMX19_05268 0.74 -0.1 803,886 + MPMX19_05268 0.74 +0.3 803,886 + MPMX19_05268 0.74 +0.3 803,886 + MPMX19_05268 0.74 +0.5 803,887 - MPMX19_05268 0.74 -0.3 803,887 - MPMX19_05268 0.74 +0.7 803,887 - MPMX19_05268 0.74 -0.9 803,887 - MPMX19_05268 0.74 -0.1 803,916 + MPMX19_05268 0.77 +0.9 803,916 + MPMX19_05268 0.77 -0.7 803,916 + MPMX19_05268 0.77 +0.1 803,952 + MPMX19_05268 0.82 -1.2 803,952 + MPMX19_05268 0.82 +0.2 803,952 + MPMX19_05268 0.82 -0.2 803,953 - MPMX19_05268 0.82 -0.7 803,953 - MPMX19_05268 0.82 +0.2 803,953 - MPMX19_05268 0.82 -2.1 803,953 - MPMX19_05268 0.82 -0.1 803,953 - MPMX19_05268 0.82 -0.3 803,953 - MPMX19_05268 0.82 -1.3 804,042 + +1.2 804,042 + -0.3 804,042 + -2.1 804,143 + -0.1 804,143 + -0.5 804,144 - +0.9 804,144 - -1.7 804,144 - +3.0 804,144 - -0.3 804,180 - +1.1 804,260 + MPMX19_05269 0.19 -0.3 804,284 + MPMX19_05269 0.22 +0.9 804,284 + MPMX19_05269 0.22 -1.6 804,284 + MPMX19_05269 0.22 -0.1 804,284 + MPMX19_05269 0.22 -0.1 804,285 - MPMX19_05269 0.22 +0.7 804,428 + MPMX19_05269 0.39 +1.5 804,428 + MPMX19_05269 0.39 -0.7 804,428 + MPMX19_05269 0.39 +0.8 804,428 + MPMX19_05269 0.39 +0.3 804,428 + MPMX19_05269 0.39 -1.1 804,428 + MPMX19_05269 0.39 -0.2 804,428 + MPMX19_05269 0.39 -0.6 804,428 + MPMX19_05269 0.39 +0.2 804,428 + MPMX19_05269 0.39 -0.8 804,428 + MPMX19_05269 0.39 +0.9 804,429 - MPMX19_05269 0.39 -0.9 804,429 - MPMX19_05269 0.39 -1.3 804,429 - MPMX19_05269 0.39 +1.3 804,429 - MPMX19_05269 0.39 +0.9 804,429 - MPMX19_05269 0.39 +1.9 804,429 - MPMX19_05269 0.39 -0.7 804,429 - MPMX19_05269 0.39 +0.1 804,429 - MPMX19_05269 0.39 +1.1 804,429 - MPMX19_05269 0.39 -0.3 804,935 + -0.9 804,969 + +0.9 804,969 + -0.4 804,970 - +0.2 804,970 - -0.0 804,994 - +1.4 805,258 + MPMX19_05270 0.55 -0.6 805,258 + MPMX19_05270 0.55 -1.3 805,258 + MPMX19_05270 0.55 -0.1 805,258 + MPMX19_05270 0.55 -0.2 805,259 - MPMX19_05270 0.55 -0.1 805,259 - MPMX19_05270 0.55 +1.2 805,259 - MPMX19_05270 0.55 -0.8 805,259 - MPMX19_05270 0.55 -1.3 805,259 - MPMX19_05270 0.55 +1.0 805,259 - MPMX19_05270 0.55 +0.0 805,269 + MPMX19_05270 0.57 -0.7 805,269 + MPMX19_05270 0.57 +0.7 805,269 + MPMX19_05270 0.57 -1.8 805,269 + MPMX19_05270 0.57 -0.1 805,269 + MPMX19_05270 0.57 +0.2 805,270 - MPMX19_05270 0.57 -0.2 805,270 - MPMX19_05270 0.57 -0.3 805,270 - MPMX19_05270 0.57 -0.1 805,270 - MPMX19_05270 0.57 -1.5 805,270 - MPMX19_05270 0.57 -0.7 805,371 + MPMX19_05270 0.76 -0.7 805,371 + MPMX19_05270 0.76 -0.7 805,371 + MPMX19_05270 0.76 -0.9 805,372 - MPMX19_05270 0.77 -1.1 805,372 - MPMX19_05270 0.77 +0.1 805,372 - MPMX19_05270 0.77 -0.5 805,372 - MPMX19_05270 0.77 -0.7 805,540 + +0.2 805,540 + +1.7 805,540 + -0.7 805,540 + -2.6 805,540 + +0.9 805,540 + -0.4 805,541 - +1.2 805,541 - -0.4 805,541 - -1.1 805,541 - +0.3 805,541 - -0.5 805,541 - +0.9 805,541 - -0.1 805,541 - +0.1 805,546 + -1.0 805,547 - +0.1 805,547 - -0.2 805,547 - -0.9 805,599 + +0.7 805,679 + MPMX19_05271 0.56 -0.3 805,679 + MPMX19_05271 0.56 -1.1 805,679 + MPMX19_05271 0.56 -0.3 805,679 + MPMX19_05271 0.56 +0.5 805,734 + +1.0 805,734 + -0.6 805,734 + -0.1 805,734 + -0.9 805,734 + -0.4 805,734 + -0.1 805,734 + +0.9 805,735 - +0.7 805,735 - +1.3 805,735 - -1.7 805,735 - -0.9 805,735 - +0.1 805,735 - -0.6 805,735 - -0.7 805,891 + MPMX19_05272 0.41 -1.0 805,891 + MPMX19_05272 0.41 +0.1 805,891 + MPMX19_05272 0.41 +0.1 805,891 + MPMX19_05272 0.41 -1.1 805,891 + MPMX19_05272 0.41 +0.3 805,891 + MPMX19_05272 0.41 +0.7 805,892 - MPMX19_05272 0.41 -0.2 805,892 - MPMX19_05272 0.41 -1.0 805,892 - MPMX19_05272 0.41 -0.7 805,892 - MPMX19_05272 0.41 -2.1
Or see this region's nucleotide sequence