Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05238 and MPMX19_05239 are separated by 46 nucleotides MPMX19_05239 and MPMX19_05240 are separated by 380 nucleotides
MPMX19_05238: MPMX19_05238 - Periplasmic dipeptide transport protein, at 766,339 to 767,961
_05238
MPMX19_05239: MPMX19_05239 - hypothetical protein, at 768,008 to 769,462
_05239
MPMX19_05240: MPMX19_05240 - L-threonine dehydratase catabolic TdcB, at 769,843 to 770,817
_05240
Position (kb) 768
769
770 Strain fitness (log2 ratio) -2
-1
0
1
2 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.024 kb on - strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.078 kb on - strand, within MPMX19_05238 at 767.078 kb on - strand, within MPMX19_05238 at 767.078 kb on - strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.326 kb on + strand, within MPMX19_05238 at 767.326 kb on + strand, within MPMX19_05238 at 767.326 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.479 kb on + strand, within MPMX19_05238 at 767.479 kb on + strand, within MPMX19_05238 at 767.479 kb on + strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.500 kb on + strand, within MPMX19_05238 at 767.500 kb on + strand, within MPMX19_05238 at 767.500 kb on + strand, within MPMX19_05238 at 767.501 kb on - strand, within MPMX19_05238 at 767.501 kb on - strand, within MPMX19_05238 at 767.501 kb on - strand, within MPMX19_05238 at 767.501 kb on - strand, within MPMX19_05238 at 767.596 kb on + strand, within MPMX19_05238 at 767.596 kb on + strand, within MPMX19_05238 at 767.596 kb on + strand, within MPMX19_05238 at 767.597 kb on - strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.639 kb on - strand, within MPMX19_05238 at 767.639 kb on - strand, within MPMX19_05238 at 767.639 kb on - strand, within MPMX19_05238 at 767.680 kb on + strand, within MPMX19_05238 at 767.680 kb on + strand, within MPMX19_05238 at 767.680 kb on + strand, within MPMX19_05238 at 767.681 kb on - strand, within MPMX19_05238 at 767.809 kb on + strand at 767.906 kb on - strand at 767.963 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.972 kb on - strand at 767.972 kb on - strand at 767.972 kb on - strand at 767.972 kb on - strand at 767.972 kb on - strand at 768.392 kb on + strand, within MPMX19_05239 at 768.393 kb on - strand, within MPMX19_05239 at 768.393 kb on - strand, within MPMX19_05239 at 768.393 kb on - strand, within MPMX19_05239 at 768.407 kb on + strand, within MPMX19_05239 at 768.407 kb on + strand, within MPMX19_05239 at 768.407 kb on + strand, within MPMX19_05239 at 768.408 kb on - strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.648 kb on - strand, within MPMX19_05239 at 768.648 kb on - strand, within MPMX19_05239 at 768.648 kb on - strand, within MPMX19_05239 at 768.994 kb on + strand, within MPMX19_05239 at 768.994 kb on + strand, within MPMX19_05239 at 768.995 kb on - strand, within MPMX19_05239 at 768.995 kb on - strand, within MPMX19_05239 at 768.995 kb on - strand, within MPMX19_05239 at 769.378 kb on + strand at 769.378 kb on + strand at 769.378 kb on + strand at 769.378 kb on + strand at 769.378 kb on + strand at 769.378 kb on + strand at 769.378 kb on + strand at 769.378 kb on + strand at 769.379 kb on - strand at 769.418 kb on + strand at 769.418 kb on + strand at 769.418 kb on + strand at 769.470 kb on + strand at 769.470 kb on + strand at 769.471 kb on - strand at 769.768 kb on + strand at 769.768 kb on + strand at 769.768 kb on + strand at 769.768 kb on + strand at 769.769 kb on - strand at 769.769 kb on - strand at 769.769 kb on - strand at 769.769 kb on - strand at 769.811 kb on - strand at 770.190 kb on - strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.204 kb on + strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.205 kb on - strand, within MPMX19_05240 at 770.229 kb on + strand, within MPMX19_05240 at 770.229 kb on + strand, within MPMX19_05240 at 770.229 kb on + strand, within MPMX19_05240 at 770.229 kb on + strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.230 kb on - strand, within MPMX19_05240 at 770.350 kb on + strand, within MPMX19_05240 at 770.350 kb on + strand, within MPMX19_05240 at 770.350 kb on + strand, within MPMX19_05240 at 770.350 kb on + strand, within MPMX19_05240 at 770.351 kb on - strand, within MPMX19_05240 at 770.351 kb on - strand, within MPMX19_05240
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 767,023 + MPMX19_05238 0.42 -0.8 767,023 + MPMX19_05238 0.42 -2.1 767,023 + MPMX19_05238 0.42 -2.0 767,023 + MPMX19_05238 0.42 -1.3 767,023 + MPMX19_05238 0.42 -0.5 767,024 - MPMX19_05238 0.42 -0.3 767,077 + MPMX19_05238 0.45 -0.1 767,077 + MPMX19_05238 0.45 -1.3 767,077 + MPMX19_05238 0.45 -0.3 767,077 + MPMX19_05238 0.45 -1.1 767,077 + MPMX19_05238 0.45 -1.1 767,078 - MPMX19_05238 0.46 +0.3 767,078 - MPMX19_05238 0.46 -1.2 767,078 - MPMX19_05238 0.46 -1.5 767,227 + MPMX19_05238 0.55 -1.3 767,227 + MPMX19_05238 0.55 -1.8 767,227 + MPMX19_05238 0.55 +0.7 767,227 + MPMX19_05238 0.55 +0.7 767,227 + MPMX19_05238 0.55 -1.4 767,227 + MPMX19_05238 0.55 -0.2 767,227 + MPMX19_05238 0.55 +0.1 767,227 + MPMX19_05238 0.55 +1.7 767,227 + MPMX19_05238 0.55 +0.7 767,228 - MPMX19_05238 0.55 -1.5 767,228 - MPMX19_05238 0.55 -1.1 767,228 - MPMX19_05238 0.55 -1.6 767,228 - MPMX19_05238 0.55 -0.1 767,228 - MPMX19_05238 0.55 +0.4 767,228 - MPMX19_05238 0.55 -2.2 767,228 - MPMX19_05238 0.55 +0.8 767,228 - MPMX19_05238 0.55 +0.6 767,228 - MPMX19_05238 0.55 -1.7 767,228 - MPMX19_05238 0.55 -0.8 767,228 - MPMX19_05238 0.55 +0.1 767,228 - MPMX19_05238 0.55 -2.5 767,228 - MPMX19_05238 0.55 -0.4 767,228 - MPMX19_05238 0.55 -1.1 767,229 + MPMX19_05238 0.55 -0.3 767,229 + MPMX19_05238 0.55 -0.1 767,229 + MPMX19_05238 0.55 -1.8 767,229 + MPMX19_05238 0.55 -1.1 767,229 + MPMX19_05238 0.55 -2.1 767,229 + MPMX19_05238 0.55 +1.3 767,229 + MPMX19_05238 0.55 -0.6 767,229 + MPMX19_05238 0.55 -0.0 767,230 - MPMX19_05238 0.55 -0.7 767,230 - MPMX19_05238 0.55 -0.3 767,230 - MPMX19_05238 0.55 +0.4 767,230 - MPMX19_05238 0.55 +0.7 767,230 - MPMX19_05238 0.55 -1.9 767,230 - MPMX19_05238 0.55 -0.4 767,230 - MPMX19_05238 0.55 +2.2 767,230 - MPMX19_05238 0.55 -0.3 767,230 - MPMX19_05238 0.55 +0.8 767,230 - MPMX19_05238 0.55 -2.7 767,230 - MPMX19_05238 0.55 -0.8 767,326 + MPMX19_05238 0.61 -0.3 767,326 + MPMX19_05238 0.61 +0.1 767,326 + MPMX19_05238 0.61 -1.7 767,380 + MPMX19_05238 0.64 +0.1 767,380 + MPMX19_05238 0.64 +0.5 767,380 + MPMX19_05238 0.64 -0.1 767,380 + MPMX19_05238 0.64 -0.5 767,380 + MPMX19_05238 0.64 -1.1 767,380 + MPMX19_05238 0.64 -1.7 767,380 + MPMX19_05238 0.64 +1.4 767,380 + MPMX19_05238 0.64 +0.1 767,380 + MPMX19_05238 0.64 -0.5 767,380 + MPMX19_05238 0.64 -1.5 767,381 - MPMX19_05238 0.64 -0.1 767,381 - MPMX19_05238 0.64 -0.7 767,381 - MPMX19_05238 0.64 -0.8 767,381 - MPMX19_05238 0.64 +0.5 767,381 - MPMX19_05238 0.64 +1.4 767,381 - MPMX19_05238 0.64 -1.7 767,381 - MPMX19_05238 0.64 -0.3 767,381 - MPMX19_05238 0.64 +0.7 767,381 - MPMX19_05238 0.64 -0.3 767,381 - MPMX19_05238 0.64 +0.9 767,381 - MPMX19_05238 0.64 +0.2 767,381 - MPMX19_05238 0.64 +0.2 767,479 + MPMX19_05238 0.70 -0.8 767,479 + MPMX19_05238 0.70 +0.9 767,479 + MPMX19_05238 0.70 +0.3 767,480 - MPMX19_05238 0.70 -0.0 767,480 - MPMX19_05238 0.70 +0.7 767,480 - MPMX19_05238 0.70 +1.4 767,480 - MPMX19_05238 0.70 +0.7 767,480 - MPMX19_05238 0.70 -0.1 767,500 + MPMX19_05238 0.72 -0.5 767,500 + MPMX19_05238 0.72 -0.8 767,500 + MPMX19_05238 0.72 +0.2 767,501 - MPMX19_05238 0.72 -0.3 767,501 - MPMX19_05238 0.72 -1.9 767,501 - MPMX19_05238 0.72 -1.1 767,501 - MPMX19_05238 0.72 -0.1 767,596 + MPMX19_05238 0.77 -0.8 767,596 + MPMX19_05238 0.77 -0.8 767,596 + MPMX19_05238 0.77 -0.5 767,597 - MPMX19_05238 0.78 -0.4 767,638 + MPMX19_05238 0.80 -2.4 767,638 + MPMX19_05238 0.80 -1.9 767,638 + MPMX19_05238 0.80 -2.7 767,638 + MPMX19_05238 0.80 -0.9 767,638 + MPMX19_05238 0.80 -1.0 767,639 - MPMX19_05238 0.80 -1.5 767,639 - MPMX19_05238 0.80 -0.2 767,639 - MPMX19_05238 0.80 -1.5 767,680 + MPMX19_05238 0.83 -0.1 767,680 + MPMX19_05238 0.83 -0.0 767,680 + MPMX19_05238 0.83 -0.3 767,681 - MPMX19_05238 0.83 -1.0 767,809 + +0.5 767,906 - -0.7 767,963 + +0.3 767,971 + +0.5 767,971 + +0.1 767,971 + -0.4 767,971 + -0.5 767,971 + -0.2 767,971 + -0.1 767,972 - +0.7 767,972 - +1.2 767,972 - +0.7 767,972 - -0.1 767,972 - -1.3 768,392 + MPMX19_05239 0.26 -0.6 768,393 - MPMX19_05239 0.26 -0.3 768,393 - MPMX19_05239 0.26 -1.1 768,393 - MPMX19_05239 0.26 -0.4 768,407 + MPMX19_05239 0.27 +1.7 768,407 + MPMX19_05239 0.27 -2.7 768,407 + MPMX19_05239 0.27 +0.4 768,408 - MPMX19_05239 0.27 -0.9 768,626 + MPMX19_05239 0.42 -2.0 768,626 + MPMX19_05239 0.42 -0.8 768,626 + MPMX19_05239 0.42 -1.2 768,626 + MPMX19_05239 0.42 -0.3 768,626 + MPMX19_05239 0.42 -0.3 768,626 + MPMX19_05239 0.42 +0.2 768,626 + MPMX19_05239 0.42 +0.5 768,626 + MPMX19_05239 0.42 +1.1 768,626 + MPMX19_05239 0.42 +0.4 768,626 + MPMX19_05239 0.42 -0.3 768,627 - MPMX19_05239 0.43 +1.2 768,627 - MPMX19_05239 0.43 +0.1 768,627 - MPMX19_05239 0.43 -2.5 768,627 - MPMX19_05239 0.43 -0.0 768,627 - MPMX19_05239 0.43 -0.7 768,627 - MPMX19_05239 0.43 -1.6 768,627 - MPMX19_05239 0.43 -0.5 768,627 - MPMX19_05239 0.43 -0.5 768,648 - MPMX19_05239 0.44 +0.7 768,648 - MPMX19_05239 0.44 -0.0 768,648 - MPMX19_05239 0.44 -1.7 768,994 + MPMX19_05239 0.68 -0.9 768,994 + MPMX19_05239 0.68 -1.1 768,995 - MPMX19_05239 0.68 -1.7 768,995 - MPMX19_05239 0.68 -1.7 768,995 - MPMX19_05239 0.68 -0.1 769,378 + +0.7 769,378 + +0.1 769,378 + -0.2 769,378 + -1.8 769,378 + +0.2 769,378 + -1.5 769,378 + -0.5 769,378 + -1.1 769,379 - -0.9 769,418 + -1.3 769,418 + -0.2 769,418 + +0.1 769,470 + -0.3 769,470 + +1.0 769,471 - -0.5 769,768 + -1.0 769,768 + -1.3 769,768 + -0.6 769,768 + -0.8 769,769 - -0.3 769,769 - -1.7 769,769 - +1.0 769,769 - -1.1 769,811 - +0.5 770,190 - MPMX19_05240 0.36 -0.9 770,204 + MPMX19_05240 0.37 -0.1 770,204 + MPMX19_05240 0.37 -0.1 770,204 + MPMX19_05240 0.37 +0.1 770,204 + MPMX19_05240 0.37 -0.7 770,204 + MPMX19_05240 0.37 -0.3 770,204 + MPMX19_05240 0.37 -0.9 770,204 + MPMX19_05240 0.37 -0.0 770,204 + MPMX19_05240 0.37 -2.2 770,204 + MPMX19_05240 0.37 -1.5 770,204 + MPMX19_05240 0.37 +0.1 770,205 - MPMX19_05240 0.37 +0.5 770,205 - MPMX19_05240 0.37 -0.3 770,205 - MPMX19_05240 0.37 +0.2 770,205 - MPMX19_05240 0.37 -0.2 770,205 - MPMX19_05240 0.37 -0.7 770,205 - MPMX19_05240 0.37 -2.3 770,205 - MPMX19_05240 0.37 -1.4 770,205 - MPMX19_05240 0.37 +2.0 770,205 - MPMX19_05240 0.37 -0.1 770,205 - MPMX19_05240 0.37 -1.5 770,205 - MPMX19_05240 0.37 -2.1 770,205 - MPMX19_05240 0.37 -2.0 770,205 - MPMX19_05240 0.37 +0.1 770,205 - MPMX19_05240 0.37 -0.0 770,205 - MPMX19_05240 0.37 -0.9 770,229 + MPMX19_05240 0.40 -0.9 770,229 + MPMX19_05240 0.40 -0.5 770,229 + MPMX19_05240 0.40 +0.6 770,229 + MPMX19_05240 0.40 -0.7 770,230 - MPMX19_05240 0.40 -0.2 770,230 - MPMX19_05240 0.40 -0.5 770,230 - MPMX19_05240 0.40 -0.6 770,230 - MPMX19_05240 0.40 -0.5 770,230 - MPMX19_05240 0.40 +1.7 770,230 - MPMX19_05240 0.40 -1.6 770,230 - MPMX19_05240 0.40 -2.0 770,350 + MPMX19_05240 0.52 -1.2 770,350 + MPMX19_05240 0.52 -0.7 770,350 + MPMX19_05240 0.52 +1.4 770,350 + MPMX19_05240 0.52 -0.1 770,351 - MPMX19_05240 0.52 -1.7 770,351 - MPMX19_05240 0.52 -0.2
Or see this region's nucleotide sequence