Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05163

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05162 and MPMX19_05163 are separated by 339 nucleotidesMPMX19_05163 and MPMX19_05164 are separated by 1 nucleotides MPMX19_05162: MPMX19_05162 - Ferrous-iron efflux pump FieF, at 662,080 to 663,501 _05162 MPMX19_05163: MPMX19_05163 - hypothetical protein, at 663,841 to 664,932 _05163 MPMX19_05164: MPMX19_05164 - putative ABC transporter permease protein, at 664,934 to 665,941 _05164 Position (kb) 663 664 665Strain fitness (log2 ratio) -2 -1 0 1 2at 663.706 kb on + strandat 663.707 kb on - strandat 663.775 kb on + strandat 663.776 kb on - strandat 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.054 kb on + strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.055 kb on - strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.465 kb on + strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.466 kb on - strand, within MPMX19_05163at 664.467 kb on + strand, within MPMX19_05163at 664.467 kb on + strand, within MPMX19_05163at 664.467 kb on + strand, within MPMX19_05163at 664.467 kb on + strand, within MPMX19_05163at 664.467 kb on + strand, within MPMX19_05163at 664.468 kb on - strand, within MPMX19_05163at 664.468 kb on - strand, within MPMX19_05163at 664.468 kb on - strand, within MPMX19_05163at 664.468 kb on - strand, within MPMX19_05163at 664.468 kb on - strand, within MPMX19_05163at 664.654 kb on + strand, within MPMX19_05163at 664.654 kb on + strand, within MPMX19_05163at 664.654 kb on + strand, within MPMX19_05163at 664.654 kb on + strand, within MPMX19_05163at 664.655 kb on - strand, within MPMX19_05163at 664.655 kb on - strand, within MPMX19_05163at 664.655 kb on - strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.717 kb on + strand, within MPMX19_05163at 664.718 kb on - strand, within MPMX19_05163at 664.718 kb on - strand, within MPMX19_05163at 664.718 kb on - strand, within MPMX19_05163at 664.718 kb on - strand, within MPMX19_05163at 664.718 kb on - strand, within MPMX19_05163at 664.718 kb on - strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.807 kb on + strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.808 kb on - strand, within MPMX19_05163at 664.855 kb on + strandat 664.855 kb on + strandat 664.855 kb on + strandat 664.855 kb on + strandat 664.855 kb on + strandat 664.855 kb on + strandat 664.855 kb on + strandat 664.855 kb on + strandat 664.856 kb on - strandat 664.856 kb on - strandat 664.856 kb on - strandat 664.856 kb on - strandat 664.856 kb on - strandat 664.856 kb on - strandat 664.867 kb on + strandat 664.867 kb on + strandat 664.867 kb on + strandat 664.868 kb on - strandat 664.868 kb on - strandat 664.986 kb on + strandat 664.986 kb on + strandat 664.987 kb on - strandat 664.987 kb on - strandat 664.987 kb on - strandat 665.177 kb on + strand, within MPMX19_05164at 665.177 kb on + strand, within MPMX19_05164at 665.178 kb on - strand, within MPMX19_05164at 665.178 kb on - strand, within MPMX19_05164at 665.178 kb on - strand, within MPMX19_05164at 665.178 kb on - strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.217 kb on + strand, within MPMX19_05164at 665.218 kb on - strand, within MPMX19_05164at 665.218 kb on - strand, within MPMX19_05164at 665.218 kb on - strand, within MPMX19_05164at 665.218 kb on - strand, within MPMX19_05164at 665.218 kb on - strand, within MPMX19_05164at 665.336 kb on + strand, within MPMX19_05164at 665.336 kb on + strand, within MPMX19_05164at 665.336 kb on + strand, within MPMX19_05164at 665.337 kb on - strand, within MPMX19_05164at 665.337 kb on - strand, within MPMX19_05164at 665.337 kb on - strand, within MPMX19_05164at 665.441 kb on + strand, within MPMX19_05164at 665.441 kb on + strand, within MPMX19_05164at 665.441 kb on + strand, within MPMX19_05164at 665.441 kb on + strand, within MPMX19_05164at 665.442 kb on - strand, within MPMX19_05164at 665.456 kb on + strand, within MPMX19_05164at 665.456 kb on + strand, within MPMX19_05164at 665.456 kb on + strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.457 kb on - strand, within MPMX19_05164at 665.810 kb on + strand, within MPMX19_05164at 665.810 kb on + strand, within MPMX19_05164at 665.810 kb on + strand, within MPMX19_05164at 665.811 kb on - strand, within MPMX19_05164at 665.811 kb on - strand, within MPMX19_05164at 665.811 kb on - strand, within MPMX19_05164

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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663,706 + -0.2
663,707 - -0.2
663,775 + -0.9
663,776 - +0.5
664,054 + MPMX19_05163 0.20 +1.4
664,054 + MPMX19_05163 0.20 +0.5
664,054 + MPMX19_05163 0.20 +0.8
664,054 + MPMX19_05163 0.20 +1.5
664,054 + MPMX19_05163 0.20 -0.8
664,054 + MPMX19_05163 0.20 +0.2
664,054 + MPMX19_05163 0.20 +0.1
664,054 + MPMX19_05163 0.20 +1.4
664,055 - MPMX19_05163 0.20 -2.2
664,055 - MPMX19_05163 0.20 -1.9
664,055 - MPMX19_05163 0.20 -1.3
664,055 - MPMX19_05163 0.20 -0.2
664,055 - MPMX19_05163 0.20 -0.6
664,055 - MPMX19_05163 0.20 +0.8
664,055 - MPMX19_05163 0.20 +1.1
664,055 - MPMX19_05163 0.20 +1.4
664,055 - MPMX19_05163 0.20 +0.3
664,055 - MPMX19_05163 0.20 +0.7
664,055 - MPMX19_05163 0.20 -1.0
664,055 - MPMX19_05163 0.20 -2.6
664,055 - MPMX19_05163 0.20 +0.0
664,055 - MPMX19_05163 0.20 -0.5
664,465 + MPMX19_05163 0.57 -0.0
664,465 + MPMX19_05163 0.57 -0.6
664,465 + MPMX19_05163 0.57 -0.1
664,465 + MPMX19_05163 0.57 -0.6
664,465 + MPMX19_05163 0.57 +0.8
664,465 + MPMX19_05163 0.57 -0.1
664,465 + MPMX19_05163 0.57 -0.1
664,465 + MPMX19_05163 0.57 -1.8
664,465 + MPMX19_05163 0.57 -0.0
664,466 - MPMX19_05163 0.57 +0.3
664,466 - MPMX19_05163 0.57 -0.6
664,466 - MPMX19_05163 0.57 +1.4
664,466 - MPMX19_05163 0.57 -0.6
664,466 - MPMX19_05163 0.57 -0.3
664,466 - MPMX19_05163 0.57 -0.3
664,466 - MPMX19_05163 0.57 -2.0
664,466 - MPMX19_05163 0.57 -0.3
664,467 + MPMX19_05163 0.57 -0.4
664,467 + MPMX19_05163 0.57 -0.0
664,467 + MPMX19_05163 0.57 -2.5
664,467 + MPMX19_05163 0.57 -0.1
664,467 + MPMX19_05163 0.57 +1.7
664,468 - MPMX19_05163 0.57 +0.1
664,468 - MPMX19_05163 0.57 -0.4
664,468 - MPMX19_05163 0.57 -0.5
664,468 - MPMX19_05163 0.57 +0.5
664,468 - MPMX19_05163 0.57 -0.2
664,654 + MPMX19_05163 0.74 -0.9
664,654 + MPMX19_05163 0.74 +0.3
664,654 + MPMX19_05163 0.74 +0.3
664,654 + MPMX19_05163 0.74 -2.2
664,655 - MPMX19_05163 0.75 +0.5
664,655 - MPMX19_05163 0.75 +0.7
664,655 - MPMX19_05163 0.75 -1.1
664,717 + MPMX19_05163 0.80 +1.1
664,717 + MPMX19_05163 0.80 -1.1
664,717 + MPMX19_05163 0.80 -2.1
664,717 + MPMX19_05163 0.80 +0.6
664,717 + MPMX19_05163 0.80 +2.0
664,717 + MPMX19_05163 0.80 -0.4
664,717 + MPMX19_05163 0.80 -0.4
664,717 + MPMX19_05163 0.80 +0.1
664,717 + MPMX19_05163 0.80 +1.0
664,718 - MPMX19_05163 0.80 +0.1
664,718 - MPMX19_05163 0.80 -0.5
664,718 - MPMX19_05163 0.80 +0.7
664,718 - MPMX19_05163 0.80 -0.3
664,718 - MPMX19_05163 0.80 -1.3
664,718 - MPMX19_05163 0.80 -1.3
664,807 + MPMX19_05163 0.88 -0.1
664,807 + MPMX19_05163 0.88 -1.3
664,807 + MPMX19_05163 0.88 +0.7
664,807 + MPMX19_05163 0.88 +0.1
664,807 + MPMX19_05163 0.88 -0.6
664,807 + MPMX19_05163 0.88 -0.1
664,807 + MPMX19_05163 0.88 +1.1
664,807 + MPMX19_05163 0.88 -0.9
664,807 + MPMX19_05163 0.88 +0.1
664,807 + MPMX19_05163 0.88 -2.2
664,808 - MPMX19_05163 0.89 -0.1
664,808 - MPMX19_05163 0.89 +2.2
664,808 - MPMX19_05163 0.89 -0.0
664,808 - MPMX19_05163 0.89 -1.6
664,808 - MPMX19_05163 0.89 +0.1
664,808 - MPMX19_05163 0.89 -0.6
664,808 - MPMX19_05163 0.89 +0.3
664,808 - MPMX19_05163 0.89 +0.4
664,808 - MPMX19_05163 0.89 +0.2
664,855 + +0.2
664,855 + -0.6
664,855 + -1.1
664,855 + +1.4
664,855 + +0.1
664,855 + -0.7
664,855 + -1.0
664,855 + -0.2
664,856 - -0.6
664,856 - -1.4
664,856 - -0.3
664,856 - -1.1
664,856 - -1.1
664,856 - -1.0
664,867 + -1.5
664,867 + +1.7
664,867 + +0.1
664,868 - -0.8
664,868 - -1.5
664,986 + -0.1
664,986 + -0.2
664,987 - -0.4
664,987 - -0.2
664,987 - +2.0
665,177 + MPMX19_05164 0.24 -0.1
665,177 + MPMX19_05164 0.24 -0.5
665,178 - MPMX19_05164 0.24 -1.1
665,178 - MPMX19_05164 0.24 -0.8
665,178 - MPMX19_05164 0.24 +0.2
665,178 - MPMX19_05164 0.24 +1.2
665,217 + MPMX19_05164 0.28 +0.1
665,217 + MPMX19_05164 0.28 -0.7
665,217 + MPMX19_05164 0.28 -0.9
665,217 + MPMX19_05164 0.28 -0.6
665,217 + MPMX19_05164 0.28 +0.3
665,217 + MPMX19_05164 0.28 -0.8
665,217 + MPMX19_05164 0.28 -0.5
665,218 - MPMX19_05164 0.28 -0.5
665,218 - MPMX19_05164 0.28 +0.5
665,218 - MPMX19_05164 0.28 -1.2
665,218 - MPMX19_05164 0.28 +0.2
665,218 - MPMX19_05164 0.28 +1.4
665,336 + MPMX19_05164 0.40 -0.0
665,336 + MPMX19_05164 0.40 -0.4
665,336 + MPMX19_05164 0.40 -2.0
665,337 - MPMX19_05164 0.40 +1.9
665,337 - MPMX19_05164 0.40 -0.1
665,337 - MPMX19_05164 0.40 -0.9
665,441 + MPMX19_05164 0.50 +0.2
665,441 + MPMX19_05164 0.50 +0.3
665,441 + MPMX19_05164 0.50 +1.1
665,441 + MPMX19_05164 0.50 -0.6
665,442 - MPMX19_05164 0.50 +0.9
665,456 + MPMX19_05164 0.52 -1.5
665,456 + MPMX19_05164 0.52 -1.6
665,456 + MPMX19_05164 0.52 -0.6
665,457 - MPMX19_05164 0.52 +0.8
665,457 - MPMX19_05164 0.52 -0.4
665,457 - MPMX19_05164 0.52 -0.2
665,457 - MPMX19_05164 0.52 -0.6
665,457 - MPMX19_05164 0.52 -1.3
665,457 - MPMX19_05164 0.52 -1.7
665,457 - MPMX19_05164 0.52 -0.6
665,810 + MPMX19_05164 0.87 -2.2
665,810 + MPMX19_05164 0.87 +0.9
665,810 + MPMX19_05164 0.87 +0.1
665,811 - MPMX19_05164 0.87 +0.6
665,811 - MPMX19_05164 0.87 -0.3
665,811 - MPMX19_05164 0.87 +0.2

Or see this region's nucleotide sequence