Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04860 and MPMX19_04861 are separated by 130 nucleotides MPMX19_04861 and MPMX19_04862 are separated by 272 nucleotides MPMX19_04862 and MPMX19_04863 are separated by 18 nucleotides MPMX19_04863 and MPMX19_04864 are separated by 76 nucleotides MPMX19_04864 and MPMX19_04865 overlap by 1 nucleotides
MPMX19_04860: MPMX19_04860 - Type I secretion system membrane fusion protein PrsE, at 298,216 to 299,538
_04860
MPMX19_04861: MPMX19_04861 - hypothetical protein, at 299,669 to 299,932
_04861
MPMX19_04862: MPMX19_04862 - hypothetical protein, at 300,205 to 301,752
_04862
MPMX19_04863: MPMX19_04863 - Transcriptional regulatory protein LnrK, at 301,771 to 302,505
_04863
MPMX19_04864: MPMX19_04864 - hypothetical protein, at 302,582 to 302,680
_04864
MPMX19_04865: MPMX19_04865 - Sensor histidine kinase RcsC, at 302,680 to 304,167
_04865
Position (kb) 300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 299.278 kb on + strand, within MPMX19_04860 at 299.279 kb on - strand, within MPMX19_04860 at 299.279 kb on - strand, within MPMX19_04860 at 299.294 kb on - strand, within MPMX19_04860 at 299.362 kb on + strand, within MPMX19_04860 at 299.362 kb on + strand, within MPMX19_04860 at 299.363 kb on - strand, within MPMX19_04860 at 299.363 kb on - strand, within MPMX19_04860 at 299.363 kb on - strand, within MPMX19_04860 at 299.363 kb on - strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.365 kb on + strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.366 kb on - strand, within MPMX19_04860 at 299.485 kb on + strand at 299.486 kb on - strand at 299.486 kb on - strand at 299.486 kb on - strand at 299.486 kb on - strand at 299.486 kb on - strand at 299.503 kb on + strand at 299.503 kb on + strand at 299.503 kb on + strand at 299.503 kb on + strand at 299.503 kb on + strand at 299.503 kb on + strand at 299.503 kb on + strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.504 kb on - strand at 299.662 kb on + strand at 299.663 kb on - strand at 299.663 kb on - strand at 299.673 kb on + strand at 299.769 kb on + strand, within MPMX19_04861 at 299.769 kb on + strand, within MPMX19_04861 at 299.770 kb on - strand, within MPMX19_04861 at 299.770 kb on - strand, within MPMX19_04861 at 299.770 kb on - strand, within MPMX19_04861 at 299.970 kb on + strand at 299.970 kb on + strand at 299.970 kb on + strand at 299.979 kb on + strand at 299.980 kb on - strand at 299.980 kb on - strand at 299.980 kb on - strand at 299.980 kb on - strand at 300.127 kb on + strand at 300.127 kb on + strand at 300.127 kb on + strand at 300.127 kb on + strand at 300.127 kb on + strand at 300.128 kb on - strand at 300.128 kb on - strand at 300.128 kb on - strand at 300.128 kb on - strand at 300.128 kb on - strand at 300.139 kb on + strand at 300.139 kb on + strand at 300.139 kb on + strand at 300.140 kb on - strand at 300.164 kb on + strand at 300.165 kb on - strand at 300.165 kb on - strand at 300.168 kb on + strand at 300.952 kb on + strand, within MPMX19_04862 at 300.952 kb on + strand, within MPMX19_04862 at 300.952 kb on + strand, within MPMX19_04862 at 300.952 kb on + strand, within MPMX19_04862 at 300.952 kb on + strand, within MPMX19_04862 at 300.953 kb on - strand, within MPMX19_04862 at 300.953 kb on - strand, within MPMX19_04862 at 300.953 kb on - strand, within MPMX19_04862 at 300.953 kb on - strand, within MPMX19_04862 at 301.178 kb on - strand, within MPMX19_04862 at 301.178 kb on - strand, within MPMX19_04862 at 301.178 kb on - strand, within MPMX19_04862 at 301.468 kb on + strand, within MPMX19_04862 at 301.468 kb on + strand, within MPMX19_04862 at 301.468 kb on + strand, within MPMX19_04862 at 301.469 kb on - strand, within MPMX19_04862 at 301.469 kb on - strand, within MPMX19_04862 at 301.469 kb on - strand, within MPMX19_04862 at 301.750 kb on + strand at 301.750 kb on + strand at 301.750 kb on + strand at 301.750 kb on + strand at 301.751 kb on - strand at 301.751 kb on - strand at 301.751 kb on - strand at 301.751 kb on - strand at 301.751 kb on - strand at 302.279 kb on + strand, within MPMX19_04863 at 302.279 kb on + strand, within MPMX19_04863 at 302.279 kb on + strand, within MPMX19_04863 at 302.366 kb on + strand, within MPMX19_04863 at 302.366 kb on + strand, within MPMX19_04863 at 302.366 kb on + strand, within MPMX19_04863 at 302.367 kb on - strand, within MPMX19_04863 at 302.532 kb on - strand at 302.539 kb on + strand at 302.540 kb on - strand at 302.540 kb on - strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.603 kb on + strand, within MPMX19_04864 at 302.603 kb on + strand, within MPMX19_04864 at 302.603 kb on + strand, within MPMX19_04864 at 302.603 kb on + strand, within MPMX19_04864 at 302.604 kb on - strand, within MPMX19_04864 at 302.604 kb on - strand, within MPMX19_04864
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 299,278 + MPMX19_04860 0.80 -0.9 299,279 - MPMX19_04860 0.80 +2.7 299,279 - MPMX19_04860 0.80 +1.4 299,294 - MPMX19_04860 0.81 +0.1 299,362 + MPMX19_04860 0.87 +1.2 299,362 + MPMX19_04860 0.87 -0.8 299,363 - MPMX19_04860 0.87 +0.2 299,363 - MPMX19_04860 0.87 +0.0 299,363 - MPMX19_04860 0.87 +0.3 299,363 - MPMX19_04860 0.87 -1.1 299,365 + MPMX19_04860 0.87 -2.1 299,365 + MPMX19_04860 0.87 -0.5 299,365 + MPMX19_04860 0.87 +0.1 299,365 + MPMX19_04860 0.87 +0.5 299,365 + MPMX19_04860 0.87 +0.5 299,365 + MPMX19_04860 0.87 -0.4 299,365 + MPMX19_04860 0.87 -0.3 299,365 + MPMX19_04860 0.87 -0.5 299,365 + MPMX19_04860 0.87 -0.5 299,365 + MPMX19_04860 0.87 -1.8 299,365 + MPMX19_04860 0.87 -0.6 299,365 + MPMX19_04860 0.87 -0.8 299,366 - MPMX19_04860 0.87 -0.2 299,366 - MPMX19_04860 0.87 -0.5 299,366 - MPMX19_04860 0.87 +0.4 299,366 - MPMX19_04860 0.87 +0.4 299,366 - MPMX19_04860 0.87 -1.6 299,366 - MPMX19_04860 0.87 -2.6 299,366 - MPMX19_04860 0.87 +0.2 299,366 - MPMX19_04860 0.87 +1.0 299,366 - MPMX19_04860 0.87 -0.1 299,366 - MPMX19_04860 0.87 +0.7 299,366 - MPMX19_04860 0.87 -0.6 299,366 - MPMX19_04860 0.87 +0.8 299,485 + +0.7 299,486 - +0.2 299,486 - +0.1 299,486 - -1.5 299,486 - -0.1 299,486 - -2.1 299,503 + -0.8 299,503 + +0.7 299,503 + +0.2 299,503 + -1.9 299,503 + -0.1 299,503 + -0.8 299,503 + -0.2 299,504 - -0.3 299,504 - +0.3 299,504 - -0.9 299,504 - -0.2 299,504 - +0.0 299,504 - +0.3 299,504 - -0.1 299,504 - -0.3 299,662 + +1.1 299,663 - +0.1 299,663 - -0.9 299,673 + +1.2 299,769 + MPMX19_04861 0.38 -0.9 299,769 + MPMX19_04861 0.38 -1.2 299,770 - MPMX19_04861 0.38 -2.2 299,770 - MPMX19_04861 0.38 -1.5 299,770 - MPMX19_04861 0.38 -0.9 299,970 + -0.6 299,970 + -1.4 299,970 + -0.7 299,979 + +1.2 299,980 - -0.4 299,980 - -0.7 299,980 - -0.7 299,980 - -0.4 300,127 + -1.0 300,127 + -0.3 300,127 + -0.6 300,127 + +1.0 300,127 + +0.1 300,128 - -2.5 300,128 - -0.5 300,128 - -0.5 300,128 - +1.0 300,128 - -0.6 300,139 + -0.1 300,139 + +0.3 300,139 + +0.5 300,140 - -0.6 300,164 + +0.0 300,165 - +0.1 300,165 - -0.5 300,168 + +0.3 300,952 + MPMX19_04862 0.48 +1.3 300,952 + MPMX19_04862 0.48 -0.3 300,952 + MPMX19_04862 0.48 -0.8 300,952 + MPMX19_04862 0.48 -0.8 300,952 + MPMX19_04862 0.48 +0.3 300,953 - MPMX19_04862 0.48 -1.4 300,953 - MPMX19_04862 0.48 +1.4 300,953 - MPMX19_04862 0.48 -1.4 300,953 - MPMX19_04862 0.48 -2.0 301,178 - MPMX19_04862 0.63 -1.2 301,178 - MPMX19_04862 0.63 -0.9 301,178 - MPMX19_04862 0.63 +0.5 301,468 + MPMX19_04862 0.82 -0.6 301,468 + MPMX19_04862 0.82 -2.1 301,468 + MPMX19_04862 0.82 -2.3 301,469 - MPMX19_04862 0.82 -0.4 301,469 - MPMX19_04862 0.82 +0.4 301,469 - MPMX19_04862 0.82 -1.5 301,750 + -0.9 301,750 + -0.5 301,750 + -0.1 301,750 + -1.9 301,751 - -0.3 301,751 - -1.5 301,751 - +0.1 301,751 - -1.6 301,751 - +0.4 302,279 + MPMX19_04863 0.69 -1.4 302,279 + MPMX19_04863 0.69 -0.8 302,279 + MPMX19_04863 0.69 +0.9 302,366 + MPMX19_04863 0.81 -1.3 302,366 + MPMX19_04863 0.81 -0.3 302,366 + MPMX19_04863 0.81 -0.2 302,367 - MPMX19_04863 0.81 +0.3 302,532 - -1.0 302,539 + +0.6 302,540 - -1.1 302,540 - +1.2 302,583 + +0.2 302,583 + -0.3 302,583 + -0.8 302,583 + -0.1 302,583 + -1.2 302,583 + +0.3 302,583 + -1.5 302,584 - -0.9 302,584 - -0.2 302,584 - -0.5 302,584 - -1.6 302,584 - -0.6 302,584 - +0.2 302,584 - +1.0 302,584 - +0.5 302,584 - -0.6 302,584 - +0.3 302,603 + MPMX19_04864 0.21 -0.4 302,603 + MPMX19_04864 0.21 -1.6 302,603 + MPMX19_04864 0.21 -0.7 302,603 + MPMX19_04864 0.21 -0.3 302,604 - MPMX19_04864 0.22 +0.5 302,604 - MPMX19_04864 0.22 -3.2
Or see this region's nucleotide sequence