Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04860

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04859 and MPMX19_04860 are separated by 51 nucleotidesMPMX19_04860 and MPMX19_04861 are separated by 130 nucleotidesMPMX19_04861 and MPMX19_04862 are separated by 272 nucleotides MPMX19_04859: MPMX19_04859 - Vitamin B12 import ATP-binding protein BtuD, at 294,079 to 298,164 _04859 MPMX19_04860: MPMX19_04860 - Type I secretion system membrane fusion protein PrsE, at 298,216 to 299,538 _04860 MPMX19_04861: MPMX19_04861 - hypothetical protein, at 299,669 to 299,932 _04861 MPMX19_04862: MPMX19_04862 - hypothetical protein, at 300,205 to 301,752 _04862 Position (kb) 298 299 300Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 297.243 kb on + strand, within MPMX19_04859at 297.243 kb on + strand, within MPMX19_04859at 297.243 kb on + strand, within MPMX19_04859at 297.243 kb on + strand, within MPMX19_04859at 297.243 kb on + strand, within MPMX19_04859at 297.244 kb on - strand, within MPMX19_04859at 297.244 kb on - strand, within MPMX19_04859at 297.244 kb on - strand, within MPMX19_04859at 297.244 kb on - strand, within MPMX19_04859at 297.244 kb on - strand, within MPMX19_04859at 297.518 kb on - strand, within MPMX19_04859at 297.518 kb on - strand, within MPMX19_04859at 297.601 kb on + strand, within MPMX19_04859at 297.601 kb on + strand, within MPMX19_04859at 297.601 kb on + strand, within MPMX19_04859at 297.602 kb on - strand, within MPMX19_04859at 297.602 kb on - strand, within MPMX19_04859at 297.602 kb on - strand, within MPMX19_04859at 297.628 kb on + strand, within MPMX19_04859at 297.628 kb on + strand, within MPMX19_04859at 297.629 kb on - strand, within MPMX19_04859at 297.629 kb on - strand, within MPMX19_04859at 297.629 kb on - strand, within MPMX19_04859at 297.629 kb on - strand, within MPMX19_04859at 297.823 kb on + strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.823 kb on + strandat 297.824 kb on - strandat 297.824 kb on - strandat 297.824 kb on - strandat 297.824 kb on - strandat 297.824 kb on - strandat 297.824 kb on - strandat 298.077 kb on + strandat 298.077 kb on + strandat 298.077 kb on + strandat 298.078 kb on - strandat 298.078 kb on - strandat 298.078 kb on - strandat 298.078 kb on - strandat 298.078 kb on - strandat 298.078 kb on - strandat 298.672 kb on + strand, within MPMX19_04860at 298.672 kb on + strand, within MPMX19_04860at 298.672 kb on + strand, within MPMX19_04860at 298.672 kb on + strand, within MPMX19_04860at 298.672 kb on + strand, within MPMX19_04860at 298.672 kb on + strand, within MPMX19_04860at 298.672 kb on + strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.673 kb on - strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.756 kb on + strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 298.757 kb on - strand, within MPMX19_04860at 299.278 kb on + strand, within MPMX19_04860at 299.279 kb on - strand, within MPMX19_04860at 299.279 kb on - strand, within MPMX19_04860at 299.294 kb on - strand, within MPMX19_04860at 299.362 kb on + strand, within MPMX19_04860at 299.362 kb on + strand, within MPMX19_04860at 299.363 kb on - strand, within MPMX19_04860at 299.363 kb on - strand, within MPMX19_04860at 299.363 kb on - strand, within MPMX19_04860at 299.363 kb on - strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.365 kb on + strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.366 kb on - strand, within MPMX19_04860at 299.485 kb on + strandat 299.486 kb on - strandat 299.486 kb on - strandat 299.486 kb on - strandat 299.486 kb on - strandat 299.486 kb on - strandat 299.503 kb on + strandat 299.503 kb on + strandat 299.503 kb on + strandat 299.503 kb on + strandat 299.503 kb on + strandat 299.503 kb on + strandat 299.503 kb on + strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.504 kb on - strandat 299.662 kb on + strandat 299.663 kb on - strandat 299.663 kb on - strandat 299.673 kb on + strandat 299.769 kb on + strand, within MPMX19_04861at 299.769 kb on + strand, within MPMX19_04861at 299.770 kb on - strand, within MPMX19_04861at 299.770 kb on - strand, within MPMX19_04861at 299.770 kb on - strand, within MPMX19_04861at 299.970 kb on + strandat 299.970 kb on + strandat 299.970 kb on + strandat 299.979 kb on + strandat 299.980 kb on - strandat 299.980 kb on - strandat 299.980 kb on - strandat 299.980 kb on - strandat 300.127 kb on + strandat 300.127 kb on + strandat 300.127 kb on + strandat 300.127 kb on + strandat 300.127 kb on + strandat 300.128 kb on - strandat 300.128 kb on - strandat 300.128 kb on - strandat 300.128 kb on - strandat 300.128 kb on - strandat 300.139 kb on + strandat 300.139 kb on + strandat 300.139 kb on + strandat 300.140 kb on - strandat 300.164 kb on + strandat 300.165 kb on - strandat 300.165 kb on - strandat 300.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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297,243 + MPMX19_04859 0.77 +0.7
297,243 + MPMX19_04859 0.77 +0.4
297,243 + MPMX19_04859 0.77 -0.9
297,243 + MPMX19_04859 0.77 +0.2
297,243 + MPMX19_04859 0.77 +0.0
297,244 - MPMX19_04859 0.77 -0.5
297,244 - MPMX19_04859 0.77 -1.1
297,244 - MPMX19_04859 0.77 -0.4
297,244 - MPMX19_04859 0.77 -0.8
297,244 - MPMX19_04859 0.77 -0.2
297,518 - MPMX19_04859 0.84 +0.1
297,518 - MPMX19_04859 0.84 -0.6
297,601 + MPMX19_04859 0.86 -0.0
297,601 + MPMX19_04859 0.86 +0.4
297,601 + MPMX19_04859 0.86 -1.8
297,602 - MPMX19_04859 0.86 +0.4
297,602 - MPMX19_04859 0.86 +0.5
297,602 - MPMX19_04859 0.86 -0.5
297,628 + MPMX19_04859 0.87 +0.5
297,628 + MPMX19_04859 0.87 +1.0
297,629 - MPMX19_04859 0.87 +0.3
297,629 - MPMX19_04859 0.87 -1.4
297,629 - MPMX19_04859 0.87 -0.3
297,629 - MPMX19_04859 0.87 -0.3
297,823 + +0.6
297,823 + -0.3
297,823 + -1.0
297,823 + +1.0
297,824 - -0.7
297,824 - +0.6
297,824 - +0.7
297,824 - +0.6
297,824 - -2.8
297,824 - +0.7
298,077 + +0.2
298,077 + -0.5
298,077 + +0.4
298,078 - -1.0
298,078 - -0.1
298,078 - +0.9
298,078 - -2.5
298,078 - -0.0
298,078 - +1.0
298,672 + MPMX19_04860 0.34 -0.8
298,672 + MPMX19_04860 0.34 -1.5
298,672 + MPMX19_04860 0.34 +0.9
298,672 + MPMX19_04860 0.34 +0.5
298,672 + MPMX19_04860 0.34 -1.1
298,672 + MPMX19_04860 0.34 -0.3
298,672 + MPMX19_04860 0.34 -0.5
298,673 - MPMX19_04860 0.35 +0.1
298,673 - MPMX19_04860 0.35 +0.3
298,673 - MPMX19_04860 0.35 -0.8
298,673 - MPMX19_04860 0.35 +0.3
298,673 - MPMX19_04860 0.35 +0.4
298,673 - MPMX19_04860 0.35 +0.3
298,673 - MPMX19_04860 0.35 -0.2
298,673 - MPMX19_04860 0.35 -0.4
298,673 - MPMX19_04860 0.35 +1.1
298,673 - MPMX19_04860 0.35 -0.7
298,756 + MPMX19_04860 0.41 -0.6
298,756 + MPMX19_04860 0.41 -0.5
298,756 + MPMX19_04860 0.41 -1.1
298,756 + MPMX19_04860 0.41 -0.5
298,756 + MPMX19_04860 0.41 -1.5
298,756 + MPMX19_04860 0.41 +0.8
298,756 + MPMX19_04860 0.41 +0.3
298,756 + MPMX19_04860 0.41 +0.1
298,756 + MPMX19_04860 0.41 +0.7
298,756 + MPMX19_04860 0.41 +0.0
298,756 + MPMX19_04860 0.41 -0.8
298,756 + MPMX19_04860 0.41 +0.3
298,756 + MPMX19_04860 0.41 -0.9
298,757 - MPMX19_04860 0.41 -2.2
298,757 - MPMX19_04860 0.41 +0.4
298,757 - MPMX19_04860 0.41 +0.4
298,757 - MPMX19_04860 0.41 -0.2
298,757 - MPMX19_04860 0.41 -1.3
298,757 - MPMX19_04860 0.41 -0.2
298,757 - MPMX19_04860 0.41 +0.8
298,757 - MPMX19_04860 0.41 +0.2
298,757 - MPMX19_04860 0.41 +0.1
298,757 - MPMX19_04860 0.41 -1.6
298,757 - MPMX19_04860 0.41 -1.8
298,757 - MPMX19_04860 0.41 -0.5
299,278 + MPMX19_04860 0.80 -0.9
299,279 - MPMX19_04860 0.80 +2.7
299,279 - MPMX19_04860 0.80 +1.4
299,294 - MPMX19_04860 0.81 +0.1
299,362 + MPMX19_04860 0.87 +1.2
299,362 + MPMX19_04860 0.87 -0.8
299,363 - MPMX19_04860 0.87 +0.2
299,363 - MPMX19_04860 0.87 +0.0
299,363 - MPMX19_04860 0.87 +0.3
299,363 - MPMX19_04860 0.87 -1.1
299,365 + MPMX19_04860 0.87 -2.1
299,365 + MPMX19_04860 0.87 -0.5
299,365 + MPMX19_04860 0.87 +0.1
299,365 + MPMX19_04860 0.87 +0.5
299,365 + MPMX19_04860 0.87 +0.5
299,365 + MPMX19_04860 0.87 -0.4
299,365 + MPMX19_04860 0.87 -0.3
299,365 + MPMX19_04860 0.87 -0.5
299,365 + MPMX19_04860 0.87 -0.5
299,365 + MPMX19_04860 0.87 -1.8
299,365 + MPMX19_04860 0.87 -0.6
299,365 + MPMX19_04860 0.87 -0.8
299,366 - MPMX19_04860 0.87 -0.2
299,366 - MPMX19_04860 0.87 -0.5
299,366 - MPMX19_04860 0.87 +0.4
299,366 - MPMX19_04860 0.87 +0.4
299,366 - MPMX19_04860 0.87 -1.6
299,366 - MPMX19_04860 0.87 -2.6
299,366 - MPMX19_04860 0.87 +0.2
299,366 - MPMX19_04860 0.87 +1.0
299,366 - MPMX19_04860 0.87 -0.1
299,366 - MPMX19_04860 0.87 +0.7
299,366 - MPMX19_04860 0.87 -0.6
299,366 - MPMX19_04860 0.87 +0.8
299,485 + +0.7
299,486 - +0.2
299,486 - +0.1
299,486 - -1.5
299,486 - -0.1
299,486 - -2.1
299,503 + -0.8
299,503 + +0.7
299,503 + +0.2
299,503 + -1.9
299,503 + -0.1
299,503 + -0.8
299,503 + -0.2
299,504 - -0.3
299,504 - +0.3
299,504 - -0.9
299,504 - -0.2
299,504 - +0.0
299,504 - +0.3
299,504 - -0.1
299,504 - -0.3
299,662 + +1.1
299,663 - +0.1
299,663 - -0.9
299,673 + +1.2
299,769 + MPMX19_04861 0.38 -0.9
299,769 + MPMX19_04861 0.38 -1.2
299,770 - MPMX19_04861 0.38 -2.2
299,770 - MPMX19_04861 0.38 -1.5
299,770 - MPMX19_04861 0.38 -0.9
299,970 + -0.6
299,970 + -1.4
299,970 + -0.7
299,979 + +1.2
299,980 - -0.4
299,980 - -0.7
299,980 - -0.7
299,980 - -0.4
300,127 + -1.0
300,127 + -0.3
300,127 + -0.6
300,127 + +1.0
300,127 + +0.1
300,128 - -2.5
300,128 - -0.5
300,128 - -0.5
300,128 - +1.0
300,128 - -0.6
300,139 + -0.1
300,139 + +0.3
300,139 + +0.5
300,140 - -0.6
300,164 + +0.0
300,165 - +0.1
300,165 - -0.5
300,168 + +0.3

Or see this region's nucleotide sequence