Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04799 and MPMX19_04800 are separated by 3 nucleotides MPMX19_04800 and MPMX19_04801 are separated by 325 nucleotides
MPMX19_04799: MPMX19_04799 - D-inositol-3-phosphate glycosyltransferase, at 200,009 to 201,121
_04799
MPMX19_04800: MPMX19_04800 - hypothetical protein, at 201,125 to 201,718
_04800
MPMX19_04801: MPMX19_04801 - D-inositol-3-phosphate glycosyltransferase, at 202,044 to 203,219
_04801
Position (kb) 201
202 Strain fitness (log2 ratio) -2
-1
0
1
2 at 200.508 kb on + strand, within MPMX19_04799 at 200.508 kb on + strand, within MPMX19_04799 at 200.508 kb on + strand, within MPMX19_04799 at 200.508 kb on + strand, within MPMX19_04799 at 200.509 kb on - strand, within MPMX19_04799 at 200.509 kb on - strand, within MPMX19_04799 at 200.509 kb on - strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.920 kb on - strand, within MPMX19_04799 at 200.920 kb on - strand, within MPMX19_04799 at 200.972 kb on + strand, within MPMX19_04799 at 200.972 kb on + strand, within MPMX19_04799 at 200.973 kb on - strand, within MPMX19_04799 at 201.027 kb on + strand at 201.028 kb on - strand at 201.129 kb on + strand at 201.129 kb on + strand at 201.130 kb on - strand at 201.130 kb on - strand at 201.130 kb on - strand at 201.143 kb on + strand at 201.144 kb on - strand at 201.144 kb on - strand at 201.192 kb on + strand, within MPMX19_04800 at 201.192 kb on + strand, within MPMX19_04800 at 201.252 kb on + strand, within MPMX19_04800 at 201.253 kb on - strand, within MPMX19_04800 at 201.258 kb on + strand, within MPMX19_04800 at 201.304 kb on + strand, within MPMX19_04800 at 201.304 kb on + strand, within MPMX19_04800 at 201.304 kb on + strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.306 kb on + strand, within MPMX19_04800 at 201.307 kb on - strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.431 kb on - strand, within MPMX19_04800 at 201.704 kb on + strand at 201.704 kb on + strand at 201.705 kb on - strand at 201.757 kb on - strand at 201.757 kb on - strand at 201.757 kb on - strand at 201.809 kb on + strand at 201.810 kb on - strand at 201.810 kb on - strand at 201.872 kb on + strand at 201.872 kb on + strand at 201.872 kb on + strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.900 kb on - strand at 201.931 kb on + strand at 201.931 kb on + strand at 202.201 kb on + strand, within MPMX19_04801 at 202.201 kb on + strand, within MPMX19_04801 at 202.201 kb on + strand, within MPMX19_04801 at 202.201 kb on + strand, within MPMX19_04801 at 202.201 kb on + strand, within MPMX19_04801 at 202.202 kb on - strand, within MPMX19_04801 at 202.202 kb on - strand, within MPMX19_04801 at 202.202 kb on - strand, within MPMX19_04801 at 202.202 kb on - strand, within MPMX19_04801 at 202.202 kb on - strand, within MPMX19_04801 at 202.202 kb on - strand, within MPMX19_04801 at 202.206 kb on + strand, within MPMX19_04801 at 202.206 kb on + strand, within MPMX19_04801 at 202.206 kb on + strand, within MPMX19_04801 at 202.206 kb on + strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.207 kb on - strand, within MPMX19_04801 at 202.278 kb on + strand, within MPMX19_04801 at 202.437 kb on + strand, within MPMX19_04801 at 202.437 kb on + strand, within MPMX19_04801 at 202.437 kb on + strand, within MPMX19_04801 at 202.437 kb on + strand, within MPMX19_04801 at 202.437 kb on + strand, within MPMX19_04801 at 202.437 kb on + strand, within MPMX19_04801 at 202.438 kb on - strand, within MPMX19_04801 at 202.479 kb on + strand, within MPMX19_04801 at 202.551 kb on + strand, within MPMX19_04801 at 202.551 kb on + strand, within MPMX19_04801 at 202.551 kb on + strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.552 kb on - strand, within MPMX19_04801 at 202.553 kb on + strand, within MPMX19_04801 at 202.553 kb on + strand, within MPMX19_04801 at 202.553 kb on + strand, within MPMX19_04801 at 202.554 kb on - strand, within MPMX19_04801 at 202.554 kb on - strand, within MPMX19_04801
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 200,508 + MPMX19_04799 0.45 +1.1 200,508 + MPMX19_04799 0.45 -2.2 200,508 + MPMX19_04799 0.45 +0.5 200,508 + MPMX19_04799 0.45 -0.5 200,509 - MPMX19_04799 0.45 +0.2 200,509 - MPMX19_04799 0.45 +0.1 200,509 - MPMX19_04799 0.45 -0.2 200,838 + MPMX19_04799 0.74 -0.9 200,838 + MPMX19_04799 0.74 -0.1 200,838 + MPMX19_04799 0.74 +1.4 200,838 + MPMX19_04799 0.74 -1.3 200,838 + MPMX19_04799 0.74 +1.7 200,838 + MPMX19_04799 0.74 +0.4 200,838 + MPMX19_04799 0.74 -0.3 200,839 - MPMX19_04799 0.75 +0.7 200,839 - MPMX19_04799 0.75 -0.5 200,839 - MPMX19_04799 0.75 -0.4 200,839 - MPMX19_04799 0.75 -1.2 200,839 - MPMX19_04799 0.75 +0.2 200,839 - MPMX19_04799 0.75 -1.1 200,839 - MPMX19_04799 0.75 +0.1 200,920 - MPMX19_04799 0.82 -0.9 200,920 - MPMX19_04799 0.82 -0.9 200,972 + MPMX19_04799 0.87 -1.1 200,972 + MPMX19_04799 0.87 -0.0 200,973 - MPMX19_04799 0.87 -0.9 201,027 + -1.5 201,028 - -1.1 201,129 + -0.9 201,129 + -0.0 201,130 - -0.4 201,130 - -1.6 201,130 - -0.8 201,143 + -0.1 201,144 - +0.2 201,144 - +0.1 201,192 + MPMX19_04800 0.11 -0.0 201,192 + MPMX19_04800 0.11 -0.3 201,252 + MPMX19_04800 0.21 +0.5 201,253 - MPMX19_04800 0.22 +0.2 201,258 + MPMX19_04800 0.22 +0.3 201,304 + MPMX19_04800 0.30 -0.2 201,304 + MPMX19_04800 0.30 -1.1 201,304 + MPMX19_04800 0.30 -1.5 201,305 - MPMX19_04800 0.30 +1.2 201,305 - MPMX19_04800 0.30 +1.4 201,305 - MPMX19_04800 0.30 +2.0 201,305 - MPMX19_04800 0.30 -0.5 201,306 + MPMX19_04800 0.30 -0.0 201,307 - MPMX19_04800 0.31 -1.3 201,345 + MPMX19_04800 0.37 -1.3 201,345 + MPMX19_04800 0.37 +0.1 201,345 + MPMX19_04800 0.37 +0.7 201,345 + MPMX19_04800 0.37 -0.5 201,345 + MPMX19_04800 0.37 +0.7 201,345 + MPMX19_04800 0.37 +1.0 201,345 + MPMX19_04800 0.37 +0.3 201,345 + MPMX19_04800 0.37 -0.6 201,345 + MPMX19_04800 0.37 -0.6 201,346 - MPMX19_04800 0.37 -0.8 201,346 - MPMX19_04800 0.37 +0.5 201,346 - MPMX19_04800 0.37 +0.5 201,346 - MPMX19_04800 0.37 +1.6 201,346 - MPMX19_04800 0.37 +0.7 201,346 - MPMX19_04800 0.37 -1.5 201,346 - MPMX19_04800 0.37 -1.8 201,346 - MPMX19_04800 0.37 +0.7 201,346 - MPMX19_04800 0.37 -1.0 201,346 - MPMX19_04800 0.37 +0.9 201,346 - MPMX19_04800 0.37 -1.4 201,346 - MPMX19_04800 0.37 -1.4 201,346 - MPMX19_04800 0.37 -1.3 201,431 - MPMX19_04800 0.52 +0.7 201,704 + -1.1 201,704 + -0.9 201,705 - -1.8 201,757 - -1.2 201,757 - -0.2 201,757 - -1.3 201,809 + +0.4 201,810 - -0.2 201,810 - -1.1 201,872 + +0.6 201,872 + -0.3 201,872 + +0.4 201,873 - -2.2 201,873 - -1.8 201,873 - -1.1 201,873 - -2.0 201,873 - +0.0 201,873 - -2.2 201,873 - +0.2 201,873 - -1.3 201,873 - +0.7 201,876 + +1.4 201,876 + +0.7 201,876 + +0.5 201,876 + -0.8 201,876 + -0.2 201,876 + -2.3 201,876 + -2.3 201,876 + -0.3 201,876 + +0.5 201,876 + -0.3 201,876 + -1.6 201,876 + +0.1 201,876 + -0.1 201,876 + -1.5 201,876 + -0.4 201,876 + -1.4 201,876 + +0.3 201,877 - +0.1 201,877 - -0.7 201,877 - -1.5 201,877 - -0.5 201,877 - +0.5 201,877 - +0.7 201,877 - -1.6 201,877 - +0.7 201,877 - +0.2 201,877 - -0.6 201,900 - -1.1 201,931 + -0.9 201,931 + +0.8 202,201 + MPMX19_04801 0.13 +0.9 202,201 + MPMX19_04801 0.13 -1.0 202,201 + MPMX19_04801 0.13 +0.6 202,201 + MPMX19_04801 0.13 -0.9 202,201 + MPMX19_04801 0.13 -1.6 202,202 - MPMX19_04801 0.13 -0.9 202,202 - MPMX19_04801 0.13 -1.3 202,202 - MPMX19_04801 0.13 +0.5 202,202 - MPMX19_04801 0.13 +0.7 202,202 - MPMX19_04801 0.13 +0.1 202,202 - MPMX19_04801 0.13 +0.5 202,206 + MPMX19_04801 0.14 +1.1 202,206 + MPMX19_04801 0.14 +1.7 202,206 + MPMX19_04801 0.14 -0.1 202,206 + MPMX19_04801 0.14 -1.5 202,207 - MPMX19_04801 0.14 +0.1 202,207 - MPMX19_04801 0.14 -1.1 202,207 - MPMX19_04801 0.14 -0.6 202,207 - MPMX19_04801 0.14 -0.4 202,207 - MPMX19_04801 0.14 -2.6 202,207 - MPMX19_04801 0.14 -0.6 202,207 - MPMX19_04801 0.14 -1.6 202,207 - MPMX19_04801 0.14 +1.4 202,278 + MPMX19_04801 0.20 -0.2 202,437 + MPMX19_04801 0.33 -1.5 202,437 + MPMX19_04801 0.33 +0.3 202,437 + MPMX19_04801 0.33 -0.4 202,437 + MPMX19_04801 0.33 -0.9 202,437 + MPMX19_04801 0.33 -2.2 202,437 + MPMX19_04801 0.33 -0.6 202,438 - MPMX19_04801 0.34 -1.3 202,479 + MPMX19_04801 0.37 -1.2 202,551 + MPMX19_04801 0.43 +0.3 202,551 + MPMX19_04801 0.43 +1.0 202,551 + MPMX19_04801 0.43 -0.4 202,552 - MPMX19_04801 0.43 -0.6 202,552 - MPMX19_04801 0.43 -0.3 202,552 - MPMX19_04801 0.43 +0.1 202,552 - MPMX19_04801 0.43 -0.9 202,552 - MPMX19_04801 0.43 -0.5 202,552 - MPMX19_04801 0.43 -0.5 202,552 - MPMX19_04801 0.43 -2.0 202,552 - MPMX19_04801 0.43 -0.3 202,552 - MPMX19_04801 0.43 +0.7 202,553 + MPMX19_04801 0.43 -1.1 202,553 + MPMX19_04801 0.43 +0.2 202,553 + MPMX19_04801 0.43 -0.9 202,554 - MPMX19_04801 0.43 +0.1 202,554 - MPMX19_04801 0.43 -1.6
Or see this region's nucleotide sequence