Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04650 and MPMX19_04651 are separated by 53 nucleotides MPMX19_04651 and MPMX19_04652 are separated by 2 nucleotides MPMX19_04652 and MPMX19_04653 overlap by 4 nucleotides
MPMX19_04650: MPMX19_04650 - Polyphosphate:AMP phosphotransferase, at 35,214 to 36,029
_04650
MPMX19_04651: MPMX19_04651 - 3-isopropylmalate dehydratase small subunit 1, at 36,083 to 36,682
_04651
MPMX19_04652: MPMX19_04652 - 3-isopropylmalate dehydratase large subunit, at 36,685 to 38,106
_04652
MPMX19_04653: MPMX19_04653 - Fumarate reductase flavoprotein subunit, at 38,103 to 39,527
_04653
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 35.760 kb on + strand, within MPMX19_04650 at 35.760 kb on + strand, within MPMX19_04650 at 35.761 kb on - strand, within MPMX19_04650 at 35.761 kb on - strand, within MPMX19_04650 at 35.761 kb on - strand, within MPMX19_04650 at 35.761 kb on - strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.817 kb on + strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 35.818 kb on - strand, within MPMX19_04650 at 36.016 kb on + strand at 36.017 kb on - strand at 36.027 kb on + strand at 36.084 kb on + strand at 36.331 kb on + strand, within MPMX19_04651 at 36.331 kb on + strand, within MPMX19_04651 at 36.332 kb on - strand, within MPMX19_04651 at 36.332 kb on - strand, within MPMX19_04651 at 36.388 kb on + strand, within MPMX19_04651 at 36.388 kb on + strand, within MPMX19_04651 at 36.389 kb on - strand, within MPMX19_04651 at 36.389 kb on - strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.441 kb on + strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.442 kb on - strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.510 kb on + strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.511 kb on - strand, within MPMX19_04651 at 36.571 kb on - strand, within MPMX19_04651 at 36.706 kb on + strand at 36.706 kb on + strand at 36.706 kb on + strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 36.707 kb on - strand at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.127 kb on + strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.128 kb on - strand, within MPMX19_04652 at 37.494 kb on - strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.910 kb on + strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 37.911 kb on - strand, within MPMX19_04652 at 38.123 kb on + strand at 38.124 kb on - strand at 38.198 kb on - strand at 38.248 kb on + strand, within MPMX19_04653 at 38.248 kb on + strand, within MPMX19_04653 at 38.248 kb on + strand, within MPMX19_04653 at 38.248 kb on + strand, within MPMX19_04653 at 38.248 kb on + strand, within MPMX19_04653 at 38.248 kb on + strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.249 kb on - strand, within MPMX19_04653 at 38.423 kb on + strand, within MPMX19_04653 at 38.424 kb on - strand, within MPMX19_04653 at 38.424 kb on - strand, within MPMX19_04653 at 38.642 kb on - strand, within MPMX19_04653 at 38.842 kb on + strand, within MPMX19_04653 at 38.842 kb on + strand, within MPMX19_04653 at 38.842 kb on + strand, within MPMX19_04653 at 38.843 kb on - strand, within MPMX19_04653 at 38.899 kb on + strand, within MPMX19_04653 at 38.899 kb on + strand, within MPMX19_04653 at 38.899 kb on + strand, within MPMX19_04653 at 38.899 kb on + strand, within MPMX19_04653 at 38.899 kb on + strand, within MPMX19_04653
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 35,760 + MPMX19_04650 0.67 -1.0 35,760 + MPMX19_04650 0.67 -0.1 35,761 - MPMX19_04650 0.67 +0.4 35,761 - MPMX19_04650 0.67 -1.8 35,761 - MPMX19_04650 0.67 -0.6 35,761 - MPMX19_04650 0.67 +0.7 35,817 + MPMX19_04650 0.74 -0.3 35,817 + MPMX19_04650 0.74 +3.3 35,817 + MPMX19_04650 0.74 -1.3 35,817 + MPMX19_04650 0.74 +0.4 35,817 + MPMX19_04650 0.74 -0.6 35,817 + MPMX19_04650 0.74 +0.5 35,817 + MPMX19_04650 0.74 -0.1 35,817 + MPMX19_04650 0.74 -1.5 35,817 + MPMX19_04650 0.74 +0.4 35,817 + MPMX19_04650 0.74 -0.5 35,818 - MPMX19_04650 0.74 +0.6 35,818 - MPMX19_04650 0.74 +0.5 35,818 - MPMX19_04650 0.74 +2.7 35,818 - MPMX19_04650 0.74 +0.3 35,818 - MPMX19_04650 0.74 +0.7 36,016 + +0.4 36,017 - +1.3 36,027 + +0.5 36,084 + +0.5 36,331 + MPMX19_04651 0.41 +1.1 36,331 + MPMX19_04651 0.41 +0.3 36,332 - MPMX19_04651 0.41 -1.5 36,332 - MPMX19_04651 0.41 -0.2 36,388 + MPMX19_04651 0.51 +0.7 36,388 + MPMX19_04651 0.51 -0.4 36,389 - MPMX19_04651 0.51 -1.0 36,389 - MPMX19_04651 0.51 -1.5 36,441 + MPMX19_04651 0.60 -1.2 36,441 + MPMX19_04651 0.60 -1.6 36,441 + MPMX19_04651 0.60 -0.6 36,441 + MPMX19_04651 0.60 -0.9 36,441 + MPMX19_04651 0.60 +0.1 36,441 + MPMX19_04651 0.60 -1.0 36,441 + MPMX19_04651 0.60 -1.5 36,441 + MPMX19_04651 0.60 +0.1 36,441 + MPMX19_04651 0.60 -0.1 36,442 - MPMX19_04651 0.60 -2.7 36,442 - MPMX19_04651 0.60 -0.5 36,442 - MPMX19_04651 0.60 -0.3 36,442 - MPMX19_04651 0.60 -1.1 36,442 - MPMX19_04651 0.60 -0.5 36,442 - MPMX19_04651 0.60 -0.4 36,442 - MPMX19_04651 0.60 -2.2 36,510 + MPMX19_04651 0.71 +0.1 36,510 + MPMX19_04651 0.71 -0.6 36,510 + MPMX19_04651 0.71 +0.5 36,510 + MPMX19_04651 0.71 +0.2 36,510 + MPMX19_04651 0.71 -2.0 36,510 + MPMX19_04651 0.71 -1.3 36,510 + MPMX19_04651 0.71 +0.4 36,511 - MPMX19_04651 0.71 -0.1 36,511 - MPMX19_04651 0.71 -0.4 36,511 - MPMX19_04651 0.71 -1.3 36,511 - MPMX19_04651 0.71 -0.6 36,511 - MPMX19_04651 0.71 -2.2 36,511 - MPMX19_04651 0.71 +0.7 36,511 - MPMX19_04651 0.71 +0.3 36,511 - MPMX19_04651 0.71 -0.5 36,511 - MPMX19_04651 0.71 +0.5 36,511 - MPMX19_04651 0.71 -0.5 36,571 - MPMX19_04651 0.81 -1.4 36,706 + -0.3 36,706 + -2.5 36,706 + +0.4 36,707 - -1.8 36,707 - +0.0 36,707 - +0.4 36,707 - -0.3 36,707 - +1.3 36,707 - -0.8 36,707 - +0.7 37,127 + MPMX19_04652 0.31 +1.2 37,127 + MPMX19_04652 0.31 -1.3 37,127 + MPMX19_04652 0.31 -1.3 37,127 + MPMX19_04652 0.31 -1.0 37,127 + MPMX19_04652 0.31 -0.2 37,127 + MPMX19_04652 0.31 -0.1 37,127 + MPMX19_04652 0.31 +2.2 37,127 + MPMX19_04652 0.31 -0.8 37,127 + MPMX19_04652 0.31 -1.1 37,127 + MPMX19_04652 0.31 -1.8 37,127 + MPMX19_04652 0.31 -0.0 37,127 + MPMX19_04652 0.31 -0.9 37,128 - MPMX19_04652 0.31 -0.1 37,128 - MPMX19_04652 0.31 -0.5 37,128 - MPMX19_04652 0.31 -0.2 37,128 - MPMX19_04652 0.31 -0.6 37,128 - MPMX19_04652 0.31 -0.9 37,128 - MPMX19_04652 0.31 -1.4 37,128 - MPMX19_04652 0.31 -2.3 37,128 - MPMX19_04652 0.31 -0.3 37,128 - MPMX19_04652 0.31 -0.4 37,128 - MPMX19_04652 0.31 +1.7 37,128 - MPMX19_04652 0.31 -0.7 37,128 - MPMX19_04652 0.31 -0.2 37,128 - MPMX19_04652 0.31 -0.1 37,128 - MPMX19_04652 0.31 +0.5 37,128 - MPMX19_04652 0.31 -0.9 37,494 - MPMX19_04652 0.57 -0.3 37,910 + MPMX19_04652 0.86 -0.9 37,910 + MPMX19_04652 0.86 +0.7 37,910 + MPMX19_04652 0.86 -1.0 37,910 + MPMX19_04652 0.86 -0.7 37,910 + MPMX19_04652 0.86 -1.3 37,910 + MPMX19_04652 0.86 +0.5 37,910 + MPMX19_04652 0.86 +0.8 37,910 + MPMX19_04652 0.86 +0.7 37,910 + MPMX19_04652 0.86 +0.5 37,910 + MPMX19_04652 0.86 -0.5 37,911 - MPMX19_04652 0.86 -0.2 37,911 - MPMX19_04652 0.86 -0.4 37,911 - MPMX19_04652 0.86 +0.2 37,911 - MPMX19_04652 0.86 -0.9 37,911 - MPMX19_04652 0.86 -0.2 37,911 - MPMX19_04652 0.86 -1.1 37,911 - MPMX19_04652 0.86 -0.4 37,911 - MPMX19_04652 0.86 -2.0 37,911 - MPMX19_04652 0.86 -0.5 38,123 + +0.8 38,124 - -0.3 38,198 - -0.1 38,248 + MPMX19_04653 0.10 -0.1 38,248 + MPMX19_04653 0.10 -0.5 38,248 + MPMX19_04653 0.10 -0.4 38,248 + MPMX19_04653 0.10 -0.2 38,248 + MPMX19_04653 0.10 -0.2 38,248 + MPMX19_04653 0.10 +1.2 38,249 - MPMX19_04653 0.10 -0.3 38,249 - MPMX19_04653 0.10 -0.8 38,249 - MPMX19_04653 0.10 -0.5 38,249 - MPMX19_04653 0.10 -1.5 38,249 - MPMX19_04653 0.10 -1.3 38,249 - MPMX19_04653 0.10 +1.0 38,249 - MPMX19_04653 0.10 -1.2 38,249 - MPMX19_04653 0.10 -0.4 38,249 - MPMX19_04653 0.10 +0.7 38,423 + MPMX19_04653 0.22 -0.2 38,424 - MPMX19_04653 0.23 -0.1 38,424 - MPMX19_04653 0.23 -0.1 38,642 - MPMX19_04653 0.38 +1.0 38,842 + MPMX19_04653 0.52 -1.4 38,842 + MPMX19_04653 0.52 +0.7 38,842 + MPMX19_04653 0.52 +1.5 38,843 - MPMX19_04653 0.52 -1.6 38,899 + MPMX19_04653 0.56 +0.3 38,899 + MPMX19_04653 0.56 -1.5 38,899 + MPMX19_04653 0.56 +0.7 38,899 + MPMX19_04653 0.56 +0.6 38,899 + MPMX19_04653 0.56 -1.6
Or see this region's nucleotide sequence