Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04646 and MPMX19_04647 are separated by 80 nucleotides MPMX19_04647 and MPMX19_04648 are separated by 138 nucleotides MPMX19_04648 and MPMX19_04649 are separated by 115 nucleotides
MPMX19_04646: MPMX19_04646 - Monoacylglycerol lipase, at 29,987 to 30,904
_04646
MPMX19_04647: MPMX19_04647 - hypothetical protein, at 30,985 to 31,182
_04647
MPMX19_04648: MPMX19_04648 - hypothetical protein, at 31,321 to 31,560
_04648
MPMX19_04649: MPMX19_04649 - Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, at 31,676 to 34,996
_04649
Position (kb) 31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 30.467 kb on + strand, within MPMX19_04646 at 30.467 kb on + strand, within MPMX19_04646 at 30.468 kb on - strand, within MPMX19_04646 at 30.468 kb on - strand, within MPMX19_04646 at 30.468 kb on - strand, within MPMX19_04646 at 30.468 kb on - strand, within MPMX19_04646 at 30.468 kb on - strand, within MPMX19_04646 at 30.468 kb on - strand, within MPMX19_04646 at 30.468 kb on - strand, within MPMX19_04646 at 30.468 kb on - strand, within MPMX19_04646 at 30.671 kb on + strand, within MPMX19_04646 at 30.671 kb on + strand, within MPMX19_04646 at 30.671 kb on + strand, within MPMX19_04646 at 30.671 kb on + strand, within MPMX19_04646 at 30.672 kb on - strand, within MPMX19_04646 at 30.672 kb on - strand, within MPMX19_04646 at 30.762 kb on - strand, within MPMX19_04646 at 30.762 kb on - strand, within MPMX19_04646 at 30.762 kb on - strand, within MPMX19_04646 at 30.762 kb on - strand, within MPMX19_04646 at 30.773 kb on + strand, within MPMX19_04646 at 30.774 kb on - strand, within MPMX19_04646 at 30.903 kb on - strand at 31.011 kb on + strand, within MPMX19_04647 at 31.011 kb on + strand, within MPMX19_04647 at 31.011 kb on + strand, within MPMX19_04647 at 31.011 kb on + strand, within MPMX19_04647 at 31.011 kb on + strand, within MPMX19_04647 at 31.011 kb on + strand, within MPMX19_04647 at 31.011 kb on + strand, within MPMX19_04647 at 31.012 kb on - strand, within MPMX19_04647 at 31.069 kb on + strand, within MPMX19_04647 at 31.070 kb on - strand, within MPMX19_04647 at 31.222 kb on + strand at 31.222 kb on + strand at 31.222 kb on + strand at 31.222 kb on + strand at 31.223 kb on - strand at 31.223 kb on - strand at 31.223 kb on - strand at 31.223 kb on - strand at 31.223 kb on - strand at 31.223 kb on - strand at 31.224 kb on + strand at 31.225 kb on - strand at 31.225 kb on - strand at 31.225 kb on - strand at 31.227 kb on + strand at 31.228 kb on - strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.275 kb on - strand at 31.275 kb on - strand at 31.275 kb on - strand at 31.275 kb on - strand at 31.275 kb on - strand at 31.275 kb on - strand at 31.275 kb on - strand at 31.275 kb on - strand at 31.275 kb on - strand at 31.275 kb on - strand at 31.275 kb on - strand at 31.279 kb on + strand at 31.280 kb on - strand at 31.286 kb on + strand at 31.287 kb on - strand at 31.298 kb on + strand at 31.299 kb on + strand at 31.299 kb on + strand at 31.299 kb on + strand at 31.299 kb on + strand at 31.299 kb on + strand at 31.299 kb on + strand at 31.299 kb on + strand at 31.299 kb on + strand at 31.299 kb on + strand at 31.299 kb on + strand at 31.299 kb on + strand at 31.299 kb on + strand at 31.299 kb on + strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.300 kb on - strand at 31.345 kb on - strand, within MPMX19_04648 at 31.398 kb on + strand, within MPMX19_04648 at 31.398 kb on + strand, within MPMX19_04648 at 31.398 kb on + strand, within MPMX19_04648 at 31.398 kb on + strand, within MPMX19_04648 at 31.399 kb on - strand, within MPMX19_04648 at 31.399 kb on - strand, within MPMX19_04648 at 31.399 kb on - strand, within MPMX19_04648 at 31.399 kb on - strand, within MPMX19_04648 at 31.399 kb on - strand, within MPMX19_04648 at 31.501 kb on - strand, within MPMX19_04648 at 31.581 kb on - strand at 31.653 kb on + strand at 31.653 kb on + strand at 31.654 kb on - strand at 31.654 kb on - strand at 31.654 kb on - strand at 31.654 kb on - strand at 31.654 kb on - strand at 31.863 kb on + strand at 31.863 kb on + strand at 31.863 kb on + strand at 31.864 kb on - strand at 31.864 kb on - strand at 31.864 kb on - strand at 31.864 kb on - strand at 31.864 kb on - strand at 31.864 kb on - strand at 31.923 kb on + strand at 31.923 kb on + strand at 31.924 kb on - strand at 31.924 kb on - strand at 31.924 kb on - strand at 31.924 kb on - strand at 31.924 kb on - strand at 31.924 kb on - strand at 31.924 kb on - strand at 31.925 kb on + strand at 31.925 kb on + strand at 31.925 kb on + strand at 31.925 kb on + strand at 31.925 kb on + strand at 31.925 kb on + strand at 31.926 kb on - strand at 31.926 kb on - strand at 31.954 kb on - strand at 32.022 kb on + strand, within MPMX19_04649 at 32.022 kb on + strand, within MPMX19_04649 at 32.023 kb on - strand, within MPMX19_04649 at 32.023 kb on - strand, within MPMX19_04649 at 32.023 kb on - strand, within MPMX19_04649 at 32.023 kb on - strand, within MPMX19_04649 at 32.023 kb on - strand, within MPMX19_04649 at 32.023 kb on - strand, within MPMX19_04649 at 32.023 kb on - strand, within MPMX19_04649 at 32.070 kb on + strand, within MPMX19_04649 at 32.070 kb on + strand, within MPMX19_04649 at 32.070 kb on + strand, within MPMX19_04649 at 32.071 kb on - strand, within MPMX19_04649 at 32.088 kb on + strand, within MPMX19_04649 at 32.089 kb on - strand, within MPMX19_04649 at 32.089 kb on - strand, within MPMX19_04649 at 32.130 kb on + strand, within MPMX19_04649 at 32.131 kb on - strand, within MPMX19_04649 at 32.131 kb on - strand, within MPMX19_04649 at 32.131 kb on - strand, within MPMX19_04649 at 32.131 kb on - strand, within MPMX19_04649 at 32.131 kb on - strand, within MPMX19_04649 at 32.139 kb on + strand, within MPMX19_04649 at 32.140 kb on - strand, within MPMX19_04649 at 32.148 kb on + strand, within MPMX19_04649 at 32.148 kb on + strand, within MPMX19_04649 at 32.148 kb on + strand, within MPMX19_04649 at 32.148 kb on + strand, within MPMX19_04649 at 32.148 kb on + strand, within MPMX19_04649 at 32.148 kb on + strand, within MPMX19_04649 at 32.149 kb on - strand, within MPMX19_04649 at 32.149 kb on - strand, within MPMX19_04649 at 32.149 kb on - strand, within MPMX19_04649 at 32.263 kb on + strand, within MPMX19_04649 at 32.263 kb on + strand, within MPMX19_04649 at 32.263 kb on + strand, within MPMX19_04649 at 32.263 kb on + strand, within MPMX19_04649 at 32.263 kb on + strand, within MPMX19_04649 at 32.263 kb on + strand, within MPMX19_04649 at 32.263 kb on + strand, within MPMX19_04649 at 32.263 kb on + strand, within MPMX19_04649 at 32.263 kb on + strand, within MPMX19_04649 at 32.264 kb on - strand, within MPMX19_04649 at 32.264 kb on - strand, within MPMX19_04649 at 32.264 kb on - strand, within MPMX19_04649 at 32.264 kb on - strand, within MPMX19_04649 at 32.264 kb on - strand, within MPMX19_04649 at 32.264 kb on - strand, within MPMX19_04649 at 32.264 kb on - strand, within MPMX19_04649 at 32.265 kb on + strand, within MPMX19_04649 at 32.265 kb on + strand, within MPMX19_04649 at 32.265 kb on + strand, within MPMX19_04649 at 32.265 kb on + strand, within MPMX19_04649 at 32.265 kb on + strand, within MPMX19_04649 at 32.265 kb on + strand, within MPMX19_04649 at 32.265 kb on + strand, within MPMX19_04649 at 32.265 kb on + strand, within MPMX19_04649 at 32.265 kb on + strand, within MPMX19_04649 at 32.265 kb on + strand, within MPMX19_04649 at 32.265 kb on + strand, within MPMX19_04649 at 32.265 kb on + strand, within MPMX19_04649 at 32.266 kb on - strand, within MPMX19_04649 at 32.266 kb on - strand, within MPMX19_04649 at 32.266 kb on - strand, within MPMX19_04649 at 32.266 kb on - strand, within MPMX19_04649 at 32.266 kb on - strand, within MPMX19_04649 at 32.266 kb on - strand, within MPMX19_04649 at 32.266 kb on - strand, within MPMX19_04649 at 32.266 kb on - strand, within MPMX19_04649 at 32.302 kb on - strand, within MPMX19_04649 at 32.302 kb on - strand, within MPMX19_04649 at 32.340 kb on + strand, within MPMX19_04649 at 32.340 kb on + strand, within MPMX19_04649 at 32.340 kb on + strand, within MPMX19_04649 at 32.340 kb on + strand, within MPMX19_04649 at 32.340 kb on + strand, within MPMX19_04649 at 32.340 kb on + strand, within MPMX19_04649 at 32.340 kb on + strand, within MPMX19_04649 at 32.340 kb on + strand, within MPMX19_04649 at 32.340 kb on + strand, within MPMX19_04649 at 32.341 kb on - strand, within MPMX19_04649 at 32.341 kb on - strand, within MPMX19_04649 at 32.341 kb on - strand, within MPMX19_04649 at 32.341 kb on - strand, within MPMX19_04649 at 32.341 kb on - strand, within MPMX19_04649 at 32.341 kb on - strand, within MPMX19_04649 at 32.341 kb on - strand, within MPMX19_04649 at 32.341 kb on - strand, within MPMX19_04649 at 32.341 kb on - strand, within MPMX19_04649 at 32.341 kb on - strand, within MPMX19_04649 at 32.346 kb on + strand, within MPMX19_04649 at 32.346 kb on + strand, within MPMX19_04649 at 32.346 kb on + strand, within MPMX19_04649 at 32.346 kb on + strand, within MPMX19_04649 at 32.346 kb on + strand, within MPMX19_04649 at 32.346 kb on + strand, within MPMX19_04649 at 32.347 kb on - strand, within MPMX19_04649 at 32.347 kb on - strand, within MPMX19_04649 at 32.347 kb on - strand, within MPMX19_04649 at 32.347 kb on - strand, within MPMX19_04649 at 32.347 kb on - strand, within MPMX19_04649 at 32.347 kb on - strand, within MPMX19_04649 at 32.553 kb on + strand, within MPMX19_04649 at 32.554 kb on - strand, within MPMX19_04649
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 30,467 + MPMX19_04646 0.52 -0.9 30,467 + MPMX19_04646 0.52 -0.9 30,468 - MPMX19_04646 0.52 +0.3 30,468 - MPMX19_04646 0.52 +0.9 30,468 - MPMX19_04646 0.52 -1.4 30,468 - MPMX19_04646 0.52 -0.6 30,468 - MPMX19_04646 0.52 -0.1 30,468 - MPMX19_04646 0.52 +0.3 30,468 - MPMX19_04646 0.52 -0.6 30,468 - MPMX19_04646 0.52 +0.3 30,671 + MPMX19_04646 0.75 +0.5 30,671 + MPMX19_04646 0.75 -2.6 30,671 + MPMX19_04646 0.75 +0.5 30,671 + MPMX19_04646 0.75 -1.8 30,672 - MPMX19_04646 0.75 +0.4 30,672 - MPMX19_04646 0.75 +0.3 30,762 - MPMX19_04646 0.84 -0.4 30,762 - MPMX19_04646 0.84 -0.3 30,762 - MPMX19_04646 0.84 +0.4 30,762 - MPMX19_04646 0.84 -0.1 30,773 + MPMX19_04646 0.86 -0.3 30,774 - MPMX19_04646 0.86 -0.8 30,903 - -0.2 31,011 + MPMX19_04647 0.13 -0.6 31,011 + MPMX19_04647 0.13 +1.4 31,011 + MPMX19_04647 0.13 +0.1 31,011 + MPMX19_04647 0.13 +1.0 31,011 + MPMX19_04647 0.13 -0.8 31,011 + MPMX19_04647 0.13 +0.0 31,011 + MPMX19_04647 0.13 -1.3 31,012 - MPMX19_04647 0.14 -0.5 31,069 + MPMX19_04647 0.42 +0.8 31,070 - MPMX19_04647 0.43 -0.1 31,222 + -0.4 31,222 + -1.3 31,222 + +1.1 31,222 + -0.1 31,223 - -0.3 31,223 - -0.2 31,223 - -0.2 31,223 - -1.6 31,223 - -0.6 31,223 - +0.9 31,224 + -1.1 31,225 - +0.4 31,225 - -1.9 31,225 - -1.3 31,227 + +0.5 31,228 - -1.8 31,274 + -0.1 31,274 + +0.4 31,274 + -0.3 31,274 + +0.6 31,274 + -0.2 31,274 + -0.1 31,274 + -1.8 31,274 + -2.0 31,274 + +0.7 31,274 + +0.3 31,274 + +0.1 31,274 + -0.1 31,274 + -1.9 31,275 - -0.3 31,275 - -1.9 31,275 - -0.8 31,275 - -0.3 31,275 - -0.2 31,275 - -1.0 31,275 - -1.5 31,275 - -0.4 31,275 - -0.3 31,275 - +0.4 31,275 - -0.8 31,279 + -0.9 31,280 - -0.0 31,286 + -1.1 31,287 - -1.5 31,298 + -0.5 31,299 + -0.3 31,299 + -0.2 31,299 + -2.5 31,299 + -0.3 31,299 + -1.1 31,299 + -0.3 31,299 + +0.4 31,299 + -1.1 31,299 + -0.5 31,299 + +0.8 31,299 + +0.3 31,299 + -1.3 31,299 + -0.2 31,300 - -0.6 31,300 - +0.0 31,300 - -0.8 31,300 - +0.1 31,300 - -1.4 31,300 - +0.1 31,300 - +0.3 31,300 - +1.7 31,300 - -1.3 31,300 - +0.6 31,300 - -0.3 31,300 - -0.4 31,300 - -1.6 31,300 - -0.5 31,300 - -0.8 31,300 - +0.8 31,300 - -0.6 31,300 - +0.3 31,345 - MPMX19_04648 0.10 -0.7 31,398 + MPMX19_04648 0.32 -0.0 31,398 + MPMX19_04648 0.32 -0.5 31,398 + MPMX19_04648 0.32 -2.4 31,398 + MPMX19_04648 0.32 +1.1 31,399 - MPMX19_04648 0.33 -0.4 31,399 - MPMX19_04648 0.33 +0.1 31,399 - MPMX19_04648 0.33 +0.7 31,399 - MPMX19_04648 0.33 +0.1 31,399 - MPMX19_04648 0.33 +2.0 31,501 - MPMX19_04648 0.75 -0.9 31,581 - +0.1 31,653 + -1.6 31,653 + +0.5 31,654 - +0.1 31,654 - -1.4 31,654 - -2.1 31,654 - +0.4 31,654 - -1.9 31,863 + -0.4 31,863 + +0.2 31,863 + -0.7 31,864 - -0.8 31,864 - -0.2 31,864 - -2.0 31,864 - -0.6 31,864 - -0.6 31,864 - +0.1 31,923 + -0.8 31,923 + -0.3 31,924 - -1.1 31,924 - -0.6 31,924 - -0.4 31,924 - -1.8 31,924 - -1.8 31,924 - -0.7 31,924 - -2.6 31,925 + -0.5 31,925 + -0.6 31,925 + -0.9 31,925 + -1.5 31,925 + -0.9 31,925 + +1.0 31,926 - -0.3 31,926 - +0.4 31,954 - -1.1 32,022 + MPMX19_04649 0.10 -2.6 32,022 + MPMX19_04649 0.10 -0.9 32,023 - MPMX19_04649 0.10 +0.1 32,023 - MPMX19_04649 0.10 -0.2 32,023 - MPMX19_04649 0.10 -3.1 32,023 - MPMX19_04649 0.10 -2.2 32,023 - MPMX19_04649 0.10 -0.6 32,023 - MPMX19_04649 0.10 -0.9 32,023 - MPMX19_04649 0.10 -0.2 32,070 + MPMX19_04649 0.12 -0.0 32,070 + MPMX19_04649 0.12 +2.1 32,070 + MPMX19_04649 0.12 -0.9 32,071 - MPMX19_04649 0.12 -0.4 32,088 + MPMX19_04649 0.12 -1.3 32,089 - MPMX19_04649 0.12 -0.1 32,089 - MPMX19_04649 0.12 -2.1 32,130 + MPMX19_04649 0.14 -2.4 32,131 - MPMX19_04649 0.14 -2.4 32,131 - MPMX19_04649 0.14 +0.8 32,131 - MPMX19_04649 0.14 -0.3 32,131 - MPMX19_04649 0.14 +1.7 32,131 - MPMX19_04649 0.14 -1.3 32,139 + MPMX19_04649 0.14 -0.3 32,140 - MPMX19_04649 0.14 +0.4 32,148 + MPMX19_04649 0.14 -0.3 32,148 + MPMX19_04649 0.14 -0.2 32,148 + MPMX19_04649 0.14 -0.1 32,148 + MPMX19_04649 0.14 +1.1 32,148 + MPMX19_04649 0.14 -0.6 32,148 + MPMX19_04649 0.14 +1.1 32,149 - MPMX19_04649 0.14 -1.3 32,149 - MPMX19_04649 0.14 -1.3 32,149 - MPMX19_04649 0.14 -1.5 32,263 + MPMX19_04649 0.18 +0.1 32,263 + MPMX19_04649 0.18 +0.5 32,263 + MPMX19_04649 0.18 -1.5 32,263 + MPMX19_04649 0.18 -0.7 32,263 + MPMX19_04649 0.18 -1.4 32,263 + MPMX19_04649 0.18 -1.9 32,263 + MPMX19_04649 0.18 -0.3 32,263 + MPMX19_04649 0.18 -0.6 32,263 + MPMX19_04649 0.18 -2.0 32,264 - MPMX19_04649 0.18 -0.6 32,264 - MPMX19_04649 0.18 +0.5 32,264 - MPMX19_04649 0.18 -0.0 32,264 - MPMX19_04649 0.18 -0.9 32,264 - MPMX19_04649 0.18 -0.8 32,264 - MPMX19_04649 0.18 +0.7 32,264 - MPMX19_04649 0.18 -0.3 32,265 + MPMX19_04649 0.18 -0.6 32,265 + MPMX19_04649 0.18 -0.8 32,265 + MPMX19_04649 0.18 -0.9 32,265 + MPMX19_04649 0.18 +1.0 32,265 + MPMX19_04649 0.18 +0.9 32,265 + MPMX19_04649 0.18 -0.1 32,265 + MPMX19_04649 0.18 +1.1 32,265 + MPMX19_04649 0.18 -0.3 32,265 + MPMX19_04649 0.18 +0.0 32,265 + MPMX19_04649 0.18 -1.9 32,265 + MPMX19_04649 0.18 -0.9 32,265 + MPMX19_04649 0.18 -2.1 32,266 - MPMX19_04649 0.18 -0.4 32,266 - MPMX19_04649 0.18 -1.5 32,266 - MPMX19_04649 0.18 +0.6 32,266 - MPMX19_04649 0.18 -2.7 32,266 - MPMX19_04649 0.18 -1.1 32,266 - MPMX19_04649 0.18 +0.1 32,266 - MPMX19_04649 0.18 -0.0 32,266 - MPMX19_04649 0.18 -0.6 32,302 - MPMX19_04649 0.19 +0.2 32,302 - MPMX19_04649 0.19 +0.4 32,340 + MPMX19_04649 0.20 +0.5 32,340 + MPMX19_04649 0.20 +0.0 32,340 + MPMX19_04649 0.20 +0.7 32,340 + MPMX19_04649 0.20 +0.7 32,340 + MPMX19_04649 0.20 +0.4 32,340 + MPMX19_04649 0.20 +0.2 32,340 + MPMX19_04649 0.20 +1.7 32,340 + MPMX19_04649 0.20 -1.5 32,340 + MPMX19_04649 0.20 -2.4 32,341 - MPMX19_04649 0.20 -0.6 32,341 - MPMX19_04649 0.20 -1.1 32,341 - MPMX19_04649 0.20 +0.1 32,341 - MPMX19_04649 0.20 +0.5 32,341 - MPMX19_04649 0.20 -0.0 32,341 - MPMX19_04649 0.20 -0.0 32,341 - MPMX19_04649 0.20 -1.1 32,341 - MPMX19_04649 0.20 -0.4 32,341 - MPMX19_04649 0.20 -0.3 32,341 - MPMX19_04649 0.20 +0.3 32,346 + MPMX19_04649 0.20 +0.6 32,346 + MPMX19_04649 0.20 +0.1 32,346 + MPMX19_04649 0.20 -0.1 32,346 + MPMX19_04649 0.20 +0.1 32,346 + MPMX19_04649 0.20 -2.5 32,346 + MPMX19_04649 0.20 +0.7 32,347 - MPMX19_04649 0.20 -0.6 32,347 - MPMX19_04649 0.20 -0.3 32,347 - MPMX19_04649 0.20 -0.8 32,347 - MPMX19_04649 0.20 -1.8 32,347 - MPMX19_04649 0.20 +0.6 32,347 - MPMX19_04649 0.20 -0.8 32,553 + MPMX19_04649 0.26 -0.4 32,554 - MPMX19_04649 0.26 +0.7
Or see this region's nucleotide sequence