Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04614

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04612 and MPMX19_04613 are separated by 193 nucleotidesMPMX19_04613 and MPMX19_04614 are separated by 40 nucleotidesMPMX19_04614 and MPMX19_04615 are separated by 98 nucleotidesMPMX19_04615 and MPMX19_04616 overlap by 8 nucleotides MPMX19_04612: MPMX19_04612 - Crotonobetaine/carnitine--CoA ligase, at 997,269 to 998,903 _04612 MPMX19_04613: MPMX19_04613 - 4-chlorobenzoyl coenzyme A dehalogenase-2, at 999,097 to 999,837 _04613 MPMX19_04614: MPMX19_04614 - hypothetical protein, at 999,878 to 1,001,104 _04614 MPMX19_04615: MPMX19_04615 - Lipopolysaccharide export system ATP-binding protein LptB, at 1,001,203 to 1,001,958 _04615 MPMX19_04616: MPMX19_04616 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 1,001,951 to 1,002,673 _04616 Position (kb) 999 1000 1001 1002Strain fitness (log2 ratio) -2 -1 0 1 2 3at 998.981 kb on + strandat 999.146 kb on - strandat 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.329 kb on - strand, within MPMX19_04614at 1000.329 kb on - strand, within MPMX19_04614at 1000.329 kb on - strand, within MPMX19_04614at 1000.329 kb on - strand, within MPMX19_04614at 1000.329 kb on - strand, within MPMX19_04614at 1000.329 kb on - strand, within MPMX19_04614at 1000.337 kb on + strand, within MPMX19_04614at 1000.337 kb on + strand, within MPMX19_04614at 1000.337 kb on + strand, within MPMX19_04614at 1000.337 kb on + strand, within MPMX19_04614at 1000.338 kb on - strand, within MPMX19_04614at 1000.338 kb on - strand, within MPMX19_04614at 1000.338 kb on - strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.820 kb on + strand, within MPMX19_04614at 1000.820 kb on + strand, within MPMX19_04614at 1000.820 kb on + strand, within MPMX19_04614at 1000.821 kb on - strand, within MPMX19_04614at 1000.821 kb on - strand, within MPMX19_04614at 1000.838 kb on + strand, within MPMX19_04614at 1000.839 kb on - strand, within MPMX19_04614at 1001.021 kb on + strandat 1001.021 kb on + strandat 1001.021 kb on + strandat 1001.021 kb on + strandat 1001.022 kb on - strandat 1001.022 kb on - strandat 1001.022 kb on - strandat 1001.022 kb on - strandat 1001.024 kb on + strandat 1001.024 kb on + strandat 1001.024 kb on + strandat 1001.024 kb on + strandat 1001.024 kb on + strandat 1001.024 kb on + strandat 1001.025 kb on - strandat 1001.025 kb on - strandat 1001.025 kb on - strandat 1001.238 kb on + strandat 1001.238 kb on + strandat 1001.239 kb on - strandat 1001.239 kb on - strandat 1001.239 kb on - strandat 1001.239 kb on - strandat 1001.239 kb on - strandat 1001.239 kb on - strandat 1001.239 kb on - strandat 1001.657 kb on - strand, within MPMX19_04615at 1001.657 kb on - strand, within MPMX19_04615at 1001.657 kb on - strand, within MPMX19_04615at 1001.657 kb on - strand, within MPMX19_04615at 1001.897 kb on - strandat 1001.897 kb on - strandat 1001.937 kb on + strandat 1001.937 kb on + strandat 1001.937 kb on + strandat 1001.937 kb on + strandat 1001.937 kb on + strandat 1001.937 kb on + strandat 1001.937 kb on + strandat 1001.937 kb on + strandat 1001.937 kb on + strandat 1001.937 kb on + strandat 1001.937 kb on + strandat 1002.011 kb on + strandat 1002.011 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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998,981 + +0.8
999,146 - -1.2
1,000,013 + MPMX19_04614 0.11 -0.0
1,000,013 + MPMX19_04614 0.11 -1.7
1,000,013 + MPMX19_04614 0.11 -0.7
1,000,013 + MPMX19_04614 0.11 +0.3
1,000,013 + MPMX19_04614 0.11 +0.6
1,000,013 + MPMX19_04614 0.11 -0.0
1,000,013 + MPMX19_04614 0.11 -0.5
1,000,013 + MPMX19_04614 0.11 -0.0
1,000,013 + MPMX19_04614 0.11 +0.2
1,000,013 + MPMX19_04614 0.11 -0.2
1,000,013 + MPMX19_04614 0.11 +1.3
1,000,014 - MPMX19_04614 0.11 -0.2
1,000,014 - MPMX19_04614 0.11 -0.3
1,000,014 - MPMX19_04614 0.11 -2.2
1,000,014 - MPMX19_04614 0.11 -1.2
1,000,014 - MPMX19_04614 0.11 -0.5
1,000,014 - MPMX19_04614 0.11 -1.0
1,000,014 - MPMX19_04614 0.11 +0.3
1,000,014 - MPMX19_04614 0.11 +0.1
1,000,014 - MPMX19_04614 0.11 -1.2
1,000,014 - MPMX19_04614 0.11 +1.3
1,000,014 - MPMX19_04614 0.11 -0.7
1,000,014 - MPMX19_04614 0.11 +0.5
1,000,014 - MPMX19_04614 0.11 -1.2
1,000,328 + MPMX19_04614 0.37 -1.5
1,000,328 + MPMX19_04614 0.37 -0.7
1,000,328 + MPMX19_04614 0.37 -0.2
1,000,328 + MPMX19_04614 0.37 -0.3
1,000,328 + MPMX19_04614 0.37 -0.2
1,000,328 + MPMX19_04614 0.37 -0.5
1,000,328 + MPMX19_04614 0.37 -0.7
1,000,328 + MPMX19_04614 0.37 +0.0
1,000,328 + MPMX19_04614 0.37 +2.8
1,000,328 + MPMX19_04614 0.37 -0.7
1,000,328 + MPMX19_04614 0.37 +1.5
1,000,328 + MPMX19_04614 0.37 +0.2
1,000,329 - MPMX19_04614 0.37 +1.6
1,000,329 - MPMX19_04614 0.37 +0.5
1,000,329 - MPMX19_04614 0.37 -2.2
1,000,329 - MPMX19_04614 0.37 +0.0
1,000,329 - MPMX19_04614 0.37 -0.2
1,000,329 - MPMX19_04614 0.37 -0.2
1,000,337 + MPMX19_04614 0.37 +0.4
1,000,337 + MPMX19_04614 0.37 +1.0
1,000,337 + MPMX19_04614 0.37 +0.8
1,000,337 + MPMX19_04614 0.37 +1.8
1,000,338 - MPMX19_04614 0.37 -1.2
1,000,338 - MPMX19_04614 0.37 +0.3
1,000,338 - MPMX19_04614 0.37 +0.0
1,000,412 + MPMX19_04614 0.44 +0.1
1,000,412 + MPMX19_04614 0.44 -1.0
1,000,412 + MPMX19_04614 0.44 -1.0
1,000,412 + MPMX19_04614 0.44 +1.3
1,000,412 + MPMX19_04614 0.44 +0.1
1,000,412 + MPMX19_04614 0.44 -1.1
1,000,412 + MPMX19_04614 0.44 -1.3
1,000,413 - MPMX19_04614 0.44 -1.0
1,000,413 - MPMX19_04614 0.44 +0.0
1,000,413 - MPMX19_04614 0.44 -0.7
1,000,413 - MPMX19_04614 0.44 +0.6
1,000,413 - MPMX19_04614 0.44 -1.2
1,000,413 - MPMX19_04614 0.44 +0.1
1,000,413 - MPMX19_04614 0.44 -0.7
1,000,820 + MPMX19_04614 0.77 -0.1
1,000,820 + MPMX19_04614 0.77 -0.4
1,000,820 + MPMX19_04614 0.77 -1.4
1,000,821 - MPMX19_04614 0.77 +0.2
1,000,821 - MPMX19_04614 0.77 -0.7
1,000,838 + MPMX19_04614 0.78 -1.1
1,000,839 - MPMX19_04614 0.78 -1.2
1,001,021 + +0.0
1,001,021 + +0.4
1,001,021 + +1.8
1,001,021 + +0.6
1,001,022 - -0.7
1,001,022 - -1.7
1,001,022 - -0.1
1,001,022 - -2.1
1,001,024 + +0.3
1,001,024 + -1.7
1,001,024 + +0.3
1,001,024 + -0.3
1,001,024 + +0.3
1,001,024 + +0.6
1,001,025 - +0.5
1,001,025 - -0.9
1,001,025 - +0.8
1,001,238 + +0.1
1,001,238 + -1.3
1,001,239 - -1.0
1,001,239 - +1.0
1,001,239 - -0.8
1,001,239 - -0.4
1,001,239 - -0.5
1,001,239 - -1.0
1,001,239 - -0.9
1,001,657 - MPMX19_04615 0.60 -0.3
1,001,657 - MPMX19_04615 0.60 -1.6
1,001,657 - MPMX19_04615 0.60 -0.6
1,001,657 - MPMX19_04615 0.60 -1.5
1,001,897 - -0.2
1,001,897 - +0.5
1,001,937 + +1.0
1,001,937 + -0.9
1,001,937 + +0.3
1,001,937 + -1.3
1,001,937 + -1.2
1,001,937 + +0.1
1,001,937 + +0.3
1,001,937 + +0.4
1,001,937 + -0.1
1,001,937 + +0.6
1,001,937 + -0.7
1,002,011 + -0.6
1,002,011 + -0.2

Or see this region's nucleotide sequence