Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04584

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04582 and MPMX19_04583 are separated by 66 nucleotidesMPMX19_04583 and MPMX19_04584 are separated by 46 nucleotidesMPMX19_04584 and MPMX19_04585 are separated by 15 nucleotides MPMX19_04582: MPMX19_04582 - hypothetical protein, at 959,935 to 962,364 _04582 MPMX19_04583: MPMX19_04583 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 962,431 to 963,120 _04583 MPMX19_04584: MPMX19_04584 - Lipopolysaccharide export system ATP-binding protein LptB, at 963,167 to 963,913 _04584 MPMX19_04585: MPMX19_04585 - hypothetical protein, at 963,929 to 965,089 _04585 Position (kb) 963 964Strain fitness (log2 ratio) -2 -1 0 1 2at 962.226 kb on + strandat 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.909 kb on + strand, within MPMX19_04583at 962.909 kb on + strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 963.089 kb on + strandat 963.090 kb on - strandat 963.468 kb on + strand, within MPMX19_04584at 963.469 kb on - strand, within MPMX19_04584at 963.592 kb on - strand, within MPMX19_04584at 963.630 kb on + strand, within MPMX19_04584at 963.630 kb on + strand, within MPMX19_04584at 963.630 kb on + strand, within MPMX19_04584at 963.825 kb on + strand, within MPMX19_04584at 963.826 kb on - strand, within MPMX19_04584at 963.826 kb on - strand, within MPMX19_04584at 963.826 kb on - strand, within MPMX19_04584at 963.895 kb on - strandat 963.895 kb on - strandat 964.026 kb on + strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.156 kb on - strand, within MPMX19_04585at 964.156 kb on - strand, within MPMX19_04585at 964.197 kb on + strand, within MPMX19_04585at 964.197 kb on + strand, within MPMX19_04585at 964.197 kb on + strand, within MPMX19_04585at 964.198 kb on - strand, within MPMX19_04585at 964.198 kb on - strand, within MPMX19_04585at 964.198 kb on - strand, within MPMX19_04585at 964.413 kb on + strand, within MPMX19_04585at 964.413 kb on + strand, within MPMX19_04585at 964.413 kb on + strand, within MPMX19_04585at 964.413 kb on + strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.545 kb on + strand, within MPMX19_04585at 964.546 kb on - strand, within MPMX19_04585at 964.546 kb on - strand, within MPMX19_04585at 964.546 kb on - strand, within MPMX19_04585at 964.546 kb on - strand, within MPMX19_04585at 964.612 kb on - strand, within MPMX19_04585at 964.612 kb on - strand, within MPMX19_04585at 964.843 kb on - strand, within MPMX19_04585

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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962,226 + -0.5
962,882 + MPMX19_04583 0.65 -0.5
962,882 + MPMX19_04583 0.65 +1.0
962,882 + MPMX19_04583 0.65 +1.0
962,882 + MPMX19_04583 0.65 -2.2
962,882 + MPMX19_04583 0.65 -0.8
962,882 + MPMX19_04583 0.65 -1.0
962,882 + MPMX19_04583 0.65 -1.5
962,882 + MPMX19_04583 0.65 -1.9
962,882 + MPMX19_04583 0.65 +2.1
962,882 + MPMX19_04583 0.65 -0.9
962,882 + MPMX19_04583 0.65 -0.4
962,882 + MPMX19_04583 0.65 -0.5
962,882 + MPMX19_04583 0.65 -0.5
962,883 - MPMX19_04583 0.66 -1.1
962,883 - MPMX19_04583 0.66 -1.2
962,883 - MPMX19_04583 0.66 +0.2
962,883 - MPMX19_04583 0.66 +0.8
962,883 - MPMX19_04583 0.66 +0.6
962,883 - MPMX19_04583 0.66 +0.4
962,883 - MPMX19_04583 0.66 -0.5
962,909 + MPMX19_04583 0.69 -0.6
962,909 + MPMX19_04583 0.69 -0.7
962,910 - MPMX19_04583 0.69 +0.3
962,910 - MPMX19_04583 0.69 +0.0
962,910 - MPMX19_04583 0.69 -0.8
962,910 - MPMX19_04583 0.69 -0.2
962,910 - MPMX19_04583 0.69 +0.2
962,910 - MPMX19_04583 0.69 -1.4
963,089 + +0.7
963,090 - +0.1
963,468 + MPMX19_04584 0.40 -0.6
963,469 - MPMX19_04584 0.40 -0.8
963,592 - MPMX19_04584 0.57 +0.0
963,630 + MPMX19_04584 0.62 -0.8
963,630 + MPMX19_04584 0.62 +0.4
963,630 + MPMX19_04584 0.62 +0.1
963,825 + MPMX19_04584 0.88 -0.6
963,826 - MPMX19_04584 0.88 -0.8
963,826 - MPMX19_04584 0.88 +0.3
963,826 - MPMX19_04584 0.88 -1.2
963,895 - -1.0
963,895 - -0.7
964,026 + -2.4
964,027 - -0.7
964,027 - -1.0
964,027 - -0.5
964,027 - -0.3
964,027 - -1.0
964,027 - -1.2
964,156 - MPMX19_04585 0.20 +0.6
964,156 - MPMX19_04585 0.20 -0.5
964,197 + MPMX19_04585 0.23 +0.0
964,197 + MPMX19_04585 0.23 +0.3
964,197 + MPMX19_04585 0.23 +0.3
964,198 - MPMX19_04585 0.23 +1.3
964,198 - MPMX19_04585 0.23 -0.3
964,198 - MPMX19_04585 0.23 +0.4
964,413 + MPMX19_04585 0.42 -0.5
964,413 + MPMX19_04585 0.42 +0.4
964,413 + MPMX19_04585 0.42 -1.0
964,413 + MPMX19_04585 0.42 -1.7
964,414 - MPMX19_04585 0.42 -0.8
964,414 - MPMX19_04585 0.42 -1.6
964,414 - MPMX19_04585 0.42 +0.3
964,414 - MPMX19_04585 0.42 +0.5
964,414 - MPMX19_04585 0.42 -1.6
964,414 - MPMX19_04585 0.42 -0.0
964,414 - MPMX19_04585 0.42 -0.4
964,414 - MPMX19_04585 0.42 +0.0
964,461 + MPMX19_04585 0.46 -1.2
964,461 + MPMX19_04585 0.46 -1.0
964,461 + MPMX19_04585 0.46 -1.3
964,461 + MPMX19_04585 0.46 +1.8
964,461 + MPMX19_04585 0.46 +0.3
964,461 + MPMX19_04585 0.46 -1.3
964,462 - MPMX19_04585 0.46 +1.3
964,462 - MPMX19_04585 0.46 -1.6
964,462 - MPMX19_04585 0.46 +0.1
964,462 - MPMX19_04585 0.46 -1.5
964,462 - MPMX19_04585 0.46 -0.1
964,462 - MPMX19_04585 0.46 +0.7
964,462 - MPMX19_04585 0.46 +0.6
964,462 - MPMX19_04585 0.46 -0.4
964,545 + MPMX19_04585 0.53 +0.6
964,546 - MPMX19_04585 0.53 +0.3
964,546 - MPMX19_04585 0.53 -2.4
964,546 - MPMX19_04585 0.53 -1.2
964,546 - MPMX19_04585 0.53 -1.6
964,612 - MPMX19_04585 0.59 +0.3
964,612 - MPMX19_04585 0.59 -0.5
964,843 - MPMX19_04585 0.79 +0.4

Or see this region's nucleotide sequence