Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04566 and MPMX19_04567 are separated by 79 nucleotides MPMX19_04567 and MPMX19_04568 are separated by 6 nucleotides MPMX19_04568 and MPMX19_04569 are separated by 175 nucleotides MPMX19_04569 and MPMX19_04570 overlap by 4 nucleotides
MPMX19_04566: MPMX19_04566 - hypothetical protein, at 946,417 to 947,196
_04566
MPMX19_04567: MPMX19_04567 - hypothetical protein, at 947,276 to 947,656
_04567
MPMX19_04568: MPMX19_04568 - hypothetical protein, at 947,663 to 948,064
_04568
MPMX19_04569: MPMX19_04569 - Anti-sigma-F factor NrsF, at 948,240 to 948,875
_04569
MPMX19_04570: MPMX19_04570 - ECF RNA polymerase sigma factor SigF, at 948,872 to 949,429
_04570
Position (kb) 947
948
949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 946.712 kb on + strand, within MPMX19_04566 at 946.712 kb on + strand, within MPMX19_04566 at 946.712 kb on + strand, within MPMX19_04566 at 946.712 kb on + strand, within MPMX19_04566 at 946.712 kb on + strand, within MPMX19_04566 at 946.713 kb on - strand, within MPMX19_04566 at 946.713 kb on - strand, within MPMX19_04566 at 946.713 kb on - strand, within MPMX19_04566 at 946.747 kb on + strand, within MPMX19_04566 at 946.747 kb on + strand, within MPMX19_04566 at 946.747 kb on + strand, within MPMX19_04566 at 946.747 kb on + strand, within MPMX19_04566 at 946.748 kb on - strand, within MPMX19_04566 at 946.748 kb on - strand, within MPMX19_04566 at 946.748 kb on - strand, within MPMX19_04566 at 946.748 kb on - strand, within MPMX19_04566 at 946.961 kb on + strand, within MPMX19_04566 at 946.962 kb on - strand, within MPMX19_04566 at 946.962 kb on - strand, within MPMX19_04566 at 946.962 kb on - strand, within MPMX19_04566 at 946.994 kb on + strand, within MPMX19_04566 at 946.994 kb on + strand, within MPMX19_04566 at 946.995 kb on - strand, within MPMX19_04566 at 946.995 kb on - strand, within MPMX19_04566 at 946.995 kb on - strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.012 kb on + strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.013 kb on - strand, within MPMX19_04566 at 947.058 kb on - strand, within MPMX19_04566 at 947.089 kb on - strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.090 kb on + strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.091 kb on - strand, within MPMX19_04566 at 947.253 kb on + strand at 947.270 kb on + strand at 947.270 kb on + strand at 947.270 kb on + strand at 947.271 kb on - strand at 947.271 kb on - strand at 947.271 kb on - strand at 947.271 kb on - strand at 947.271 kb on - strand at 947.277 kb on + strand at 947.277 kb on + strand at 947.277 kb on + strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.278 kb on - strand at 947.647 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.649 kb on + strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.650 kb on - strand at 947.855 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.870 kb on + strand, within MPMX19_04568 at 947.871 kb on - strand, within MPMX19_04568 at 947.871 kb on - strand, within MPMX19_04568 at 947.871 kb on - strand, within MPMX19_04568 at 947.871 kb on - strand, within MPMX19_04568 at 947.972 kb on + strand, within MPMX19_04568 at 947.993 kb on + strand, within MPMX19_04568 at 947.994 kb on - strand, within MPMX19_04568 at 948.175 kb on + strand at 948.175 kb on + strand at 948.175 kb on + strand at 948.175 kb on + strand at 948.193 kb on + strand at 948.307 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.355 kb on + strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.356 kb on - strand, within MPMX19_04569 at 948.994 kb on + strand, within MPMX19_04570
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 946,712 + MPMX19_04566 0.38 -0.7 946,712 + MPMX19_04566 0.38 -1.6 946,712 + MPMX19_04566 0.38 -1.0 946,712 + MPMX19_04566 0.38 -0.3 946,712 + MPMX19_04566 0.38 +0.0 946,713 - MPMX19_04566 0.38 -1.3 946,713 - MPMX19_04566 0.38 +0.8 946,713 - MPMX19_04566 0.38 -1.0 946,747 + MPMX19_04566 0.42 -1.0 946,747 + MPMX19_04566 0.42 -0.4 946,747 + MPMX19_04566 0.42 +0.8 946,747 + MPMX19_04566 0.42 -0.7 946,748 - MPMX19_04566 0.42 -2.8 946,748 - MPMX19_04566 0.42 -1.6 946,748 - MPMX19_04566 0.42 -1.0 946,748 - MPMX19_04566 0.42 -1.1 946,961 + MPMX19_04566 0.70 -1.7 946,962 - MPMX19_04566 0.70 +1.5 946,962 - MPMX19_04566 0.70 -0.2 946,962 - MPMX19_04566 0.70 -0.5 946,994 + MPMX19_04566 0.74 +1.0 946,994 + MPMX19_04566 0.74 -0.8 946,995 - MPMX19_04566 0.74 +0.2 946,995 - MPMX19_04566 0.74 -1.9 946,995 - MPMX19_04566 0.74 -0.8 947,012 + MPMX19_04566 0.76 -1.6 947,012 + MPMX19_04566 0.76 -0.9 947,012 + MPMX19_04566 0.76 -0.9 947,012 + MPMX19_04566 0.76 +1.4 947,012 + MPMX19_04566 0.76 -0.5 947,012 + MPMX19_04566 0.76 -0.7 947,012 + MPMX19_04566 0.76 +0.2 947,012 + MPMX19_04566 0.76 +1.4 947,012 + MPMX19_04566 0.76 -0.2 947,012 + MPMX19_04566 0.76 -0.5 947,012 + MPMX19_04566 0.76 +0.8 947,012 + MPMX19_04566 0.76 -0.1 947,012 + MPMX19_04566 0.76 -1.2 947,012 + MPMX19_04566 0.76 +0.6 947,013 - MPMX19_04566 0.76 +0.3 947,013 - MPMX19_04566 0.76 +0.3 947,013 - MPMX19_04566 0.76 -0.9 947,013 - MPMX19_04566 0.76 -1.2 947,013 - MPMX19_04566 0.76 +1.1 947,013 - MPMX19_04566 0.76 -1.2 947,013 - MPMX19_04566 0.76 +1.4 947,013 - MPMX19_04566 0.76 +0.3 947,013 - MPMX19_04566 0.76 +0.0 947,013 - MPMX19_04566 0.76 -0.6 947,013 - MPMX19_04566 0.76 -1.7 947,058 - MPMX19_04566 0.82 -1.6 947,089 - MPMX19_04566 0.86 -0.4 947,090 + MPMX19_04566 0.86 -1.7 947,090 + MPMX19_04566 0.86 -1.0 947,090 + MPMX19_04566 0.86 -1.7 947,090 + MPMX19_04566 0.86 -0.9 947,090 + MPMX19_04566 0.86 -2.5 947,090 + MPMX19_04566 0.86 +0.7 947,090 + MPMX19_04566 0.86 -0.7 947,090 + MPMX19_04566 0.86 -1.1 947,090 + MPMX19_04566 0.86 -0.9 947,090 + MPMX19_04566 0.86 +0.2 947,090 + MPMX19_04566 0.86 +0.4 947,090 + MPMX19_04566 0.86 -0.7 947,090 + MPMX19_04566 0.86 +0.7 947,090 + MPMX19_04566 0.86 -0.1 947,090 + MPMX19_04566 0.86 +0.8 947,091 - MPMX19_04566 0.86 -0.7 947,091 - MPMX19_04566 0.86 -1.0 947,091 - MPMX19_04566 0.86 -0.2 947,091 - MPMX19_04566 0.86 -1.4 947,091 - MPMX19_04566 0.86 -1.0 947,091 - MPMX19_04566 0.86 -1.2 947,091 - MPMX19_04566 0.86 -2.3 947,091 - MPMX19_04566 0.86 -1.9 947,091 - MPMX19_04566 0.86 +0.8 947,091 - MPMX19_04566 0.86 +2.2 947,091 - MPMX19_04566 0.86 -0.5 947,091 - MPMX19_04566 0.86 -2.0 947,091 - MPMX19_04566 0.86 -1.0 947,091 - MPMX19_04566 0.86 -1.0 947,091 - MPMX19_04566 0.86 -0.3 947,091 - MPMX19_04566 0.86 +0.9 947,091 - MPMX19_04566 0.86 -1.7 947,091 - MPMX19_04566 0.86 +0.1 947,091 - MPMX19_04566 0.86 +0.7 947,091 - MPMX19_04566 0.86 +0.3 947,091 - MPMX19_04566 0.86 -0.2 947,091 - MPMX19_04566 0.86 +0.0 947,253 + +0.5 947,270 + -0.9 947,270 + +0.4 947,270 + -0.2 947,271 - -0.0 947,271 - +0.5 947,271 - -0.7 947,271 - +1.7 947,271 - -2.1 947,277 + +1.5 947,277 + +0.6 947,277 + -0.8 947,278 - -0.0 947,278 - +0.3 947,278 - -0.7 947,278 - +0.7 947,278 - -0.2 947,278 - -0.8 947,278 - -0.5 947,278 - -0.2 947,278 - +0.5 947,647 + -0.0 947,649 + -0.2 947,649 + +0.8 947,649 + +0.8 947,649 + +0.6 947,649 + -0.4 947,649 + -0.7 947,649 + -1.5 947,649 + -0.3 947,649 + -1.1 947,649 + +0.1 947,650 - -0.2 947,650 - -1.1 947,650 - +1.1 947,650 - -1.2 947,650 - +0.4 947,650 - -1.6 947,650 - +0.3 947,650 - -0.3 947,855 + MPMX19_04568 0.48 -0.3 947,870 + MPMX19_04568 0.51 -1.3 947,870 + MPMX19_04568 0.51 +0.3 947,870 + MPMX19_04568 0.51 -0.2 947,870 + MPMX19_04568 0.51 +0.3 947,870 + MPMX19_04568 0.51 +0.0 947,870 + MPMX19_04568 0.51 -1.0 947,870 + MPMX19_04568 0.51 -0.3 947,870 + MPMX19_04568 0.51 +0.0 947,871 - MPMX19_04568 0.52 -1.0 947,871 - MPMX19_04568 0.52 -1.2 947,871 - MPMX19_04568 0.52 -2.2 947,871 - MPMX19_04568 0.52 -2.4 947,972 + MPMX19_04568 0.77 -2.3 947,993 + MPMX19_04568 0.82 +0.3 947,994 - MPMX19_04568 0.82 +1.0 948,175 + -0.5 948,175 + +0.3 948,175 + +0.8 948,175 + -0.2 948,193 + -0.6 948,307 + MPMX19_04569 0.11 +0.5 948,355 + MPMX19_04569 0.18 -1.3 948,355 + MPMX19_04569 0.18 +0.8 948,355 + MPMX19_04569 0.18 +0.8 948,355 + MPMX19_04569 0.18 -0.0 948,355 + MPMX19_04569 0.18 -0.2 948,355 + MPMX19_04569 0.18 +0.7 948,356 - MPMX19_04569 0.18 -0.6 948,356 - MPMX19_04569 0.18 +0.5 948,356 - MPMX19_04569 0.18 -1.0 948,356 - MPMX19_04569 0.18 -1.2 948,356 - MPMX19_04569 0.18 +0.0 948,356 - MPMX19_04569 0.18 -0.2 948,994 + MPMX19_04570 0.22 -0.5
Or see this region's nucleotide sequence