Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04114 and MPMX19_04115 are separated by 22 nucleotides MPMX19_04115 and MPMX19_04116 overlap by 4 nucleotides
MPMX19_04114: MPMX19_04114 - hypothetical protein, at 421,078 to 422,766
_04114
MPMX19_04115: MPMX19_04115 - Sensor histidine kinase RcsC, at 422,789 to 425,038
_04115
MPMX19_04116: MPMX19_04116 - Protein-glutamate methylesterase/protein-glutamine glutaminase of group 3 operon, at 425,035 to 426,210
_04116
Position (kb) 422
423
424
425
426 Strain fitness (log2 ratio) -2
-1
0
1 at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.756 kb on - strand at 422.756 kb on - strand at 422.756 kb on - strand at 424.681 kb on + strand, within MPMX19_04115 at 424.682 kb on - strand, within MPMX19_04115 at 424.682 kb on - strand, within MPMX19_04115 at 424.976 kb on + strand at 424.976 kb on + strand at 424.976 kb on + strand at 424.976 kb on + strand at 424.977 kb on - strand at 424.977 kb on - strand at 424.977 kb on - strand at 424.977 kb on - strand at 425.416 kb on + strand, within MPMX19_04116 at 425.745 kb on + strand, within MPMX19_04116 at 425.745 kb on + strand, within MPMX19_04116 at 425.745 kb on + strand, within MPMX19_04116 at 425.745 kb on + strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.746 kb on - strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.851 kb on + strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.852 kb on - strand, within MPMX19_04116 at 425.975 kb on - strand, within MPMX19_04116
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 422,755 + -1.4 422,755 + -0.2 422,755 + +0.4 422,755 + +0.5 422,755 + +0.4 422,755 + -0.4 422,755 + -1.1 422,755 + -1.7 422,756 - -1.7 422,756 - +0.4 422,756 - -1.6 424,681 + MPMX19_04115 0.84 -1.4 424,682 - MPMX19_04115 0.84 -0.9 424,682 - MPMX19_04115 0.84 -1.3 424,976 + +0.8 424,976 + -1.4 424,976 + +0.1 424,976 + -1.1 424,977 - -0.2 424,977 - +0.3 424,977 - -1.4 424,977 - -0.6 425,416 + MPMX19_04116 0.32 -0.6 425,745 + MPMX19_04116 0.60 +0.2 425,745 + MPMX19_04116 0.60 +0.1 425,745 + MPMX19_04116 0.60 -1.3 425,745 + MPMX19_04116 0.60 -0.6 425,746 - MPMX19_04116 0.60 +0.0 425,746 - MPMX19_04116 0.60 -0.8 425,746 - MPMX19_04116 0.60 -1.2 425,746 - MPMX19_04116 0.60 -1.7 425,746 - MPMX19_04116 0.60 -1.2 425,851 + MPMX19_04116 0.69 -0.4 425,851 + MPMX19_04116 0.69 +0.2 425,851 + MPMX19_04116 0.69 +0.6 425,851 + MPMX19_04116 0.69 +1.0 425,851 + MPMX19_04116 0.69 +1.2 425,851 + MPMX19_04116 0.69 -0.2 425,851 + MPMX19_04116 0.69 -0.6 425,851 + MPMX19_04116 0.69 -0.0 425,851 + MPMX19_04116 0.69 +1.5 425,852 - MPMX19_04116 0.69 -0.2 425,852 - MPMX19_04116 0.69 -1.8 425,852 - MPMX19_04116 0.69 -0.4 425,852 - MPMX19_04116 0.69 +0.4 425,852 - MPMX19_04116 0.69 +0.1 425,852 - MPMX19_04116 0.69 +0.4 425,852 - MPMX19_04116 0.69 +0.4 425,852 - MPMX19_04116 0.69 +0.2 425,975 - MPMX19_04116 0.80 -0.7
Or see this region's nucleotide sequence