Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03557 and MPMX19_03558 are separated by 27 nucleotides MPMX19_03558 and MPMX19_03559 are separated by 63 nucleotides MPMX19_03559 and MPMX19_03560 are separated by 226 nucleotides
MPMX19_03557: MPMX19_03557 - HTH-type transcriptional regulator CynR, at 977,098 to 977,988
_03557
MPMX19_03558: MPMX19_03558 - hypothetical protein, at 978,016 to 978,396
_03558
MPMX19_03559: MPMX19_03559 - Acetoin dehydrogenase operon transcriptional activator AcoR, at 978,460 to 980,553
_03559
MPMX19_03560: MPMX19_03560 - 60 kDa chaperonin, at 980,780 to 982,420
_03560
Position (kb) 978
979
980
981 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 977.758 kb on + strand, within MPMX19_03557 at 977.758 kb on + strand, within MPMX19_03557 at 977.987 kb on - strand at 978.152 kb on + strand, within MPMX19_03558 at 978.153 kb on - strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.225 kb on - strand, within MPMX19_03558 at 978.225 kb on - strand, within MPMX19_03558 at 978.225 kb on - strand, within MPMX19_03558 at 978.359 kb on + strand at 978.359 kb on + strand at 978.359 kb on + strand at 978.359 kb on + strand at 978.360 kb on - strand at 978.360 kb on - strand at 978.360 kb on - strand at 978.424 kb on + strand at 978.425 kb on - strand at 978.512 kb on + strand at 978.839 kb on + strand, within MPMX19_03559 at 978.839 kb on + strand, within MPMX19_03559 at 978.840 kb on - strand, within MPMX19_03559 at 978.840 kb on - strand, within MPMX19_03559 at 978.840 kb on - strand, within MPMX19_03559 at 978.998 kb on + strand, within MPMX19_03559 at 979.106 kb on + strand, within MPMX19_03559 at 979.106 kb on + strand, within MPMX19_03559 at 979.107 kb on - strand, within MPMX19_03559 at 979.107 kb on - strand, within MPMX19_03559 at 979.139 kb on + strand, within MPMX19_03559 at 979.139 kb on + strand, within MPMX19_03559 at 979.140 kb on - strand, within MPMX19_03559 at 979.140 kb on - strand, within MPMX19_03559 at 979.140 kb on - strand, within MPMX19_03559 at 979.140 kb on - strand, within MPMX19_03559 at 979.259 kb on + strand, within MPMX19_03559 at 979.259 kb on + strand, within MPMX19_03559 at 979.259 kb on + strand, within MPMX19_03559 at 979.260 kb on - strand, within MPMX19_03559 at 979.260 kb on - strand, within MPMX19_03559 at 979.260 kb on - strand, within MPMX19_03559 at 979.260 kb on - strand, within MPMX19_03559 at 979.676 kb on - strand, within MPMX19_03559 at 979.676 kb on - strand, within MPMX19_03559 at 979.760 kb on + strand, within MPMX19_03559 at 979.760 kb on + strand, within MPMX19_03559 at 979.761 kb on - strand, within MPMX19_03559 at 979.761 kb on - strand, within MPMX19_03559 at 979.808 kb on + strand, within MPMX19_03559 at 979.808 kb on + strand, within MPMX19_03559 at 979.808 kb on + strand, within MPMX19_03559 at 979.809 kb on - strand, within MPMX19_03559 at 979.809 kb on - strand, within MPMX19_03559 at 980.036 kb on + strand, within MPMX19_03559 at 980.036 kb on + strand, within MPMX19_03559 at 980.037 kb on - strand, within MPMX19_03559 at 980.037 kb on - strand, within MPMX19_03559 at 980.037 kb on - strand, within MPMX19_03559 at 980.037 kb on - strand, within MPMX19_03559 at 980.037 kb on - strand, within MPMX19_03559 at 980.316 kb on + strand, within MPMX19_03559 at 980.316 kb on + strand, within MPMX19_03559 at 980.316 kb on + strand, within MPMX19_03559 at 980.316 kb on + strand, within MPMX19_03559 at 980.317 kb on - strand, within MPMX19_03559 at 980.317 kb on - strand, within MPMX19_03559 at 980.317 kb on - strand, within MPMX19_03559 at 980.632 kb on + strand at 980.633 kb on - strand at 980.702 kb on + strand at 980.705 kb on + strand at 980.705 kb on + strand at 980.705 kb on + strand at 980.706 kb on - strand at 980.706 kb on - strand at 980.706 kb on - strand at 980.706 kb on - strand at 980.713 kb on + strand at 980.713 kb on + strand at 980.714 kb on - strand at 980.714 kb on - strand at 980.714 kb on - strand at 980.714 kb on - strand at 980.714 kb on - strand at 980.714 kb on - strand at 980.714 kb on - strand at 980.714 kb on - strand at 980.714 kb on - strand at 980.718 kb on + strand at 980.718 kb on + strand at 980.719 kb on - strand at 980.719 kb on - strand at 980.793 kb on + strand at 981.176 kb on - strand, within MPMX19_03560
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 977,758 + MPMX19_03557 0.74 -1.8 977,758 + MPMX19_03557 0.74 -1.1 977,987 - +0.0 978,152 + MPMX19_03558 0.36 -0.8 978,153 - MPMX19_03558 0.36 +0.3 978,224 + MPMX19_03558 0.55 -0.1 978,224 + MPMX19_03558 0.55 -0.6 978,224 + MPMX19_03558 0.55 +0.2 978,224 + MPMX19_03558 0.55 +0.1 978,225 - MPMX19_03558 0.55 +1.2 978,225 - MPMX19_03558 0.55 -0.3 978,225 - MPMX19_03558 0.55 +0.2 978,359 + +0.3 978,359 + -1.7 978,359 + -2.0 978,359 + +0.1 978,360 - -0.9 978,360 - +0.3 978,360 - +0.4 978,424 + -1.2 978,425 - +0.1 978,512 + -1.5 978,839 + MPMX19_03559 0.18 -3.0 978,839 + MPMX19_03559 0.18 -1.1 978,840 - MPMX19_03559 0.18 -1.4 978,840 - MPMX19_03559 0.18 +0.4 978,840 - MPMX19_03559 0.18 -0.1 978,998 + MPMX19_03559 0.26 -0.0 979,106 + MPMX19_03559 0.31 -1.5 979,106 + MPMX19_03559 0.31 -1.1 979,107 - MPMX19_03559 0.31 -0.9 979,107 - MPMX19_03559 0.31 -0.0 979,139 + MPMX19_03559 0.32 -0.1 979,139 + MPMX19_03559 0.32 -2.9 979,140 - MPMX19_03559 0.32 +0.9 979,140 - MPMX19_03559 0.32 +0.7 979,140 - MPMX19_03559 0.32 +0.8 979,140 - MPMX19_03559 0.32 +0.5 979,259 + MPMX19_03559 0.38 +0.9 979,259 + MPMX19_03559 0.38 +1.1 979,259 + MPMX19_03559 0.38 -0.0 979,260 - MPMX19_03559 0.38 -1.0 979,260 - MPMX19_03559 0.38 +0.7 979,260 - MPMX19_03559 0.38 +0.3 979,260 - MPMX19_03559 0.38 -0.1 979,676 - MPMX19_03559 0.58 -0.5 979,676 - MPMX19_03559 0.58 +0.6 979,760 + MPMX19_03559 0.62 -0.3 979,760 + MPMX19_03559 0.62 -2.2 979,761 - MPMX19_03559 0.62 -1.4 979,761 - MPMX19_03559 0.62 +0.5 979,808 + MPMX19_03559 0.64 +0.4 979,808 + MPMX19_03559 0.64 -0.5 979,808 + MPMX19_03559 0.64 -0.4 979,809 - MPMX19_03559 0.64 -0.7 979,809 - MPMX19_03559 0.64 +0.1 980,036 + MPMX19_03559 0.75 +0.5 980,036 + MPMX19_03559 0.75 +0.0 980,037 - MPMX19_03559 0.75 -1.1 980,037 - MPMX19_03559 0.75 +0.0 980,037 - MPMX19_03559 0.75 +0.9 980,037 - MPMX19_03559 0.75 +0.1 980,037 - MPMX19_03559 0.75 -1.7 980,316 + MPMX19_03559 0.89 -1.0 980,316 + MPMX19_03559 0.89 -0.5 980,316 + MPMX19_03559 0.89 -1.5 980,316 + MPMX19_03559 0.89 -0.2 980,317 - MPMX19_03559 0.89 -0.5 980,317 - MPMX19_03559 0.89 +0.5 980,317 - MPMX19_03559 0.89 -0.4 980,632 + -0.3 980,633 - +0.6 980,702 + -0.3 980,705 + +0.5 980,705 + +0.3 980,705 + -0.6 980,706 - +1.3 980,706 - -1.8 980,706 - -0.5 980,706 - +0.7 980,713 + -1.3 980,713 + +0.7 980,714 - +0.3 980,714 - -0.9 980,714 - +0.4 980,714 - +0.9 980,714 - +0.6 980,714 - -0.3 980,714 - +1.3 980,714 - +0.4 980,714 - -1.4 980,718 + +1.3 980,718 + -1.7 980,719 - -0.8 980,719 - +0.2 980,793 + +1.4 981,176 - MPMX19_03560 0.24 -0.9
Or see this region's nucleotide sequence