Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03023 and MPMX19_03024 are separated by 351 nucleotides MPMX19_03024 and MPMX19_03025 are separated by 47 nucleotides
MPMX19_03023: MPMX19_03023 - Maltose O-acetyltransferase, at 288,003 to 288,563
_03023
MPMX19_03024: MPMX19_03024 - hypothetical protein, at 288,915 to 290,369
_03024
MPMX19_03025: MPMX19_03025 - hypothetical protein, at 290,417 to 291,538
_03025
Position (kb) 288
289
290
291 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 287.945 kb on + strand at 287.946 kb on - strand at 287.946 kb on - strand at 287.946 kb on - strand at 288.057 kb on + strand at 288.057 kb on + strand at 288.057 kb on + strand at 288.057 kb on + strand at 288.057 kb on + strand at 288.058 kb on - strand at 288.058 kb on - strand at 288.058 kb on - strand at 288.058 kb on - strand at 288.058 kb on - strand at 288.058 kb on - strand at 288.120 kb on + strand, within MPMX19_03023 at 288.120 kb on + strand, within MPMX19_03023 at 288.120 kb on + strand, within MPMX19_03023 at 288.121 kb on - strand, within MPMX19_03023 at 288.121 kb on - strand, within MPMX19_03023 at 288.228 kb on + strand, within MPMX19_03023 at 288.228 kb on + strand, within MPMX19_03023 at 288.228 kb on + strand, within MPMX19_03023 at 288.228 kb on + strand, within MPMX19_03023 at 288.229 kb on - strand, within MPMX19_03023 at 288.229 kb on - strand, within MPMX19_03023 at 288.234 kb on + strand, within MPMX19_03023 at 288.234 kb on + strand, within MPMX19_03023 at 288.235 kb on - strand, within MPMX19_03023 at 288.697 kb on + strand at 288.698 kb on - strand at 288.733 kb on + strand at 288.826 kb on + strand at 289.363 kb on - strand, within MPMX19_03024 at 289.383 kb on + strand, within MPMX19_03024 at 289.383 kb on + strand, within MPMX19_03024 at 289.383 kb on + strand, within MPMX19_03024 at 289.384 kb on - strand, within MPMX19_03024 at 289.384 kb on - strand, within MPMX19_03024 at 289.384 kb on - strand, within MPMX19_03024 at 289.384 kb on - strand, within MPMX19_03024 at 289.384 kb on - strand, within MPMX19_03024 at 289.384 kb on - strand, within MPMX19_03024 at 289.384 kb on - strand, within MPMX19_03024 at 289.771 kb on + strand, within MPMX19_03024 at 289.772 kb on - strand, within MPMX19_03024 at 290.151 kb on + strand, within MPMX19_03024 at 290.151 kb on + strand, within MPMX19_03024 at 290.151 kb on + strand, within MPMX19_03024 at 290.151 kb on + strand, within MPMX19_03024 at 290.151 kb on + strand, within MPMX19_03024 at 290.151 kb on + strand, within MPMX19_03024 at 290.152 kb on - strand, within MPMX19_03024 at 290.152 kb on - strand, within MPMX19_03024 at 290.152 kb on - strand, within MPMX19_03024 at 290.152 kb on - strand, within MPMX19_03024 at 290.152 kb on - strand, within MPMX19_03024 at 290.152 kb on - strand, within MPMX19_03024 at 290.152 kb on - strand, within MPMX19_03024 at 290.152 kb on - strand, within MPMX19_03024 at 290.154 kb on + strand, within MPMX19_03024 at 290.154 kb on + strand, within MPMX19_03024 at 290.155 kb on - strand, within MPMX19_03024 at 290.155 kb on - strand, within MPMX19_03024 at 290.155 kb on - strand, within MPMX19_03024 at 290.155 kb on - strand, within MPMX19_03024 at 290.155 kb on - strand, within MPMX19_03024 at 290.367 kb on + strand at 290.368 kb on - strand at 290.368 kb on - strand at 290.368 kb on - strand at 290.368 kb on - strand at 290.368 kb on - strand at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.588 kb on + strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.589 kb on - strand, within MPMX19_03025 at 290.744 kb on + strand, within MPMX19_03025 at 290.744 kb on + strand, within MPMX19_03025 at 290.744 kb on + strand, within MPMX19_03025 at 290.745 kb on - strand, within MPMX19_03025 at 290.745 kb on - strand, within MPMX19_03025 at 290.792 kb on + strand, within MPMX19_03025 at 290.792 kb on + strand, within MPMX19_03025 at 290.792 kb on + strand, within MPMX19_03025 at 290.792 kb on + strand, within MPMX19_03025 at 290.792 kb on + strand, within MPMX19_03025 at 290.793 kb on - strand, within MPMX19_03025 at 290.793 kb on - strand, within MPMX19_03025 at 290.793 kb on - strand, within MPMX19_03025 at 290.793 kb on - strand, within MPMX19_03025 at 290.793 kb on - strand, within MPMX19_03025 at 290.793 kb on - strand, within MPMX19_03025 at 290.807 kb on + strand, within MPMX19_03025 at 290.807 kb on + strand, within MPMX19_03025 at 290.807 kb on + strand, within MPMX19_03025 at 290.807 kb on + strand, within MPMX19_03025 at 290.807 kb on + strand, within MPMX19_03025 at 290.807 kb on + strand, within MPMX19_03025 at 291.020 kb on + strand, within MPMX19_03025 at 291.020 kb on + strand, within MPMX19_03025 at 291.020 kb on + strand, within MPMX19_03025 at 291.020 kb on + strand, within MPMX19_03025 at 291.020 kb on + strand, within MPMX19_03025 at 291.020 kb on + strand, within MPMX19_03025 at 291.020 kb on + strand, within MPMX19_03025 at 291.020 kb on + strand, within MPMX19_03025 at 291.021 kb on - strand, within MPMX19_03025 at 291.021 kb on - strand, within MPMX19_03025 at 291.021 kb on - strand, within MPMX19_03025 at 291.021 kb on - strand, within MPMX19_03025 at 291.021 kb on - strand, within MPMX19_03025 at 291.021 kb on - strand, within MPMX19_03025 at 291.021 kb on - strand, within MPMX19_03025 at 291.021 kb on - strand, within MPMX19_03025 at 291.119 kb on + strand, within MPMX19_03025 at 291.119 kb on + strand, within MPMX19_03025 at 291.119 kb on + strand, within MPMX19_03025 at 291.119 kb on + strand, within MPMX19_03025 at 291.119 kb on + strand, within MPMX19_03025 at 291.119 kb on + strand, within MPMX19_03025 at 291.119 kb on + strand, within MPMX19_03025 at 291.119 kb on + strand, within MPMX19_03025 at 291.119 kb on + strand, within MPMX19_03025 at 291.119 kb on + strand, within MPMX19_03025 at 291.119 kb on + strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.120 kb on - strand, within MPMX19_03025 at 291.149 kb on + strand, within MPMX19_03025 at 291.149 kb on + strand, within MPMX19_03025 at 291.149 kb on + strand, within MPMX19_03025 at 291.149 kb on + strand, within MPMX19_03025 at 291.149 kb on + strand, within MPMX19_03025 at 291.149 kb on + strand, within MPMX19_03025 at 291.150 kb on - strand, within MPMX19_03025 at 291.150 kb on - strand, within MPMX19_03025 at 291.150 kb on - strand, within MPMX19_03025 at 291.215 kb on + strand, within MPMX19_03025 at 291.215 kb on + strand, within MPMX19_03025 at 291.215 kb on + strand, within MPMX19_03025 at 291.215 kb on + strand, within MPMX19_03025 at 291.215 kb on + strand, within MPMX19_03025 at 291.215 kb on + strand, within MPMX19_03025 at 291.216 kb on - strand, within MPMX19_03025 at 291.216 kb on - strand, within MPMX19_03025 at 291.216 kb on - strand, within MPMX19_03025 at 291.216 kb on - strand, within MPMX19_03025 at 291.216 kb on - strand, within MPMX19_03025
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 287,945 + +0.2 287,946 - -0.9 287,946 - -0.3 287,946 - -0.1 288,057 + -0.7 288,057 + -0.0 288,057 + -1.0 288,057 + +0.1 288,057 + -2.3 288,058 - -1.1 288,058 - +0.5 288,058 - -1.3 288,058 - +0.3 288,058 - -1.5 288,058 - -1.7 288,120 + MPMX19_03023 0.21 -0.3 288,120 + MPMX19_03023 0.21 -0.9 288,120 + MPMX19_03023 0.21 -0.1 288,121 - MPMX19_03023 0.21 -1.7 288,121 - MPMX19_03023 0.21 +0.9 288,228 + MPMX19_03023 0.40 -0.3 288,228 + MPMX19_03023 0.40 -0.8 288,228 + MPMX19_03023 0.40 +0.0 288,228 + MPMX19_03023 0.40 -1.6 288,229 - MPMX19_03023 0.40 -1.6 288,229 - MPMX19_03023 0.40 -0.6 288,234 + MPMX19_03023 0.41 -1.0 288,234 + MPMX19_03023 0.41 -1.8 288,235 - MPMX19_03023 0.41 -0.9 288,697 + -0.7 288,698 - +0.7 288,733 + -0.4 288,826 + -0.5 289,363 - MPMX19_03024 0.31 -0.8 289,383 + MPMX19_03024 0.32 -1.5 289,383 + MPMX19_03024 0.32 +1.1 289,383 + MPMX19_03024 0.32 -0.5 289,384 - MPMX19_03024 0.32 +1.3 289,384 - MPMX19_03024 0.32 +0.3 289,384 - MPMX19_03024 0.32 +0.1 289,384 - MPMX19_03024 0.32 -1.7 289,384 - MPMX19_03024 0.32 -0.4 289,384 - MPMX19_03024 0.32 +0.9 289,384 - MPMX19_03024 0.32 -2.0 289,771 + MPMX19_03024 0.59 -0.4 289,772 - MPMX19_03024 0.59 -0.1 290,151 + MPMX19_03024 0.85 -2.5 290,151 + MPMX19_03024 0.85 -1.5 290,151 + MPMX19_03024 0.85 -1.3 290,151 + MPMX19_03024 0.85 +0.1 290,151 + MPMX19_03024 0.85 -0.3 290,151 + MPMX19_03024 0.85 +0.1 290,152 - MPMX19_03024 0.85 -1.1 290,152 - MPMX19_03024 0.85 -1.3 290,152 - MPMX19_03024 0.85 -0.6 290,152 - MPMX19_03024 0.85 -0.4 290,152 - MPMX19_03024 0.85 +0.1 290,152 - MPMX19_03024 0.85 -0.9 290,152 - MPMX19_03024 0.85 -1.3 290,152 - MPMX19_03024 0.85 -0.2 290,154 + MPMX19_03024 0.85 -2.5 290,154 + MPMX19_03024 0.85 -1.1 290,155 - MPMX19_03024 0.85 -0.3 290,155 - MPMX19_03024 0.85 -1.3 290,155 - MPMX19_03024 0.85 +0.9 290,155 - MPMX19_03024 0.85 +1.7 290,155 - MPMX19_03024 0.85 -0.6 290,367 + +0.7 290,368 - +0.0 290,368 - -2.5 290,368 - -1.5 290,368 - +0.7 290,368 - +1.4 290,588 + MPMX19_03025 0.15 -1.9 290,588 + MPMX19_03025 0.15 -0.8 290,588 + MPMX19_03025 0.15 -0.5 290,588 + MPMX19_03025 0.15 -1.6 290,588 + MPMX19_03025 0.15 -0.8 290,588 + MPMX19_03025 0.15 -0.0 290,588 + MPMX19_03025 0.15 -1.5 290,588 + MPMX19_03025 0.15 -1.7 290,588 + MPMX19_03025 0.15 -2.1 290,588 + MPMX19_03025 0.15 -0.5 290,588 + MPMX19_03025 0.15 +0.4 290,588 + MPMX19_03025 0.15 +0.5 290,588 + MPMX19_03025 0.15 +0.7 290,588 + MPMX19_03025 0.15 -0.2 290,588 + MPMX19_03025 0.15 -0.1 290,588 + MPMX19_03025 0.15 -0.6 290,588 + MPMX19_03025 0.15 -0.1 290,588 + MPMX19_03025 0.15 +0.4 290,588 + MPMX19_03025 0.15 -0.5 290,588 + MPMX19_03025 0.15 -1.5 290,588 + MPMX19_03025 0.15 -1.9 290,588 + MPMX19_03025 0.15 -0.3 290,589 - MPMX19_03025 0.15 -0.5 290,589 - MPMX19_03025 0.15 +0.5 290,589 - MPMX19_03025 0.15 -0.9 290,589 - MPMX19_03025 0.15 +0.7 290,589 - MPMX19_03025 0.15 +0.0 290,589 - MPMX19_03025 0.15 +1.5 290,589 - MPMX19_03025 0.15 -0.1 290,589 - MPMX19_03025 0.15 +0.0 290,589 - MPMX19_03025 0.15 +0.2 290,589 - MPMX19_03025 0.15 +0.0 290,589 - MPMX19_03025 0.15 -0.6 290,589 - MPMX19_03025 0.15 -0.7 290,589 - MPMX19_03025 0.15 -2.4 290,589 - MPMX19_03025 0.15 -2.6 290,589 - MPMX19_03025 0.15 -0.9 290,589 - MPMX19_03025 0.15 -0.0 290,589 - MPMX19_03025 0.15 -0.4 290,589 - MPMX19_03025 0.15 -0.6 290,589 - MPMX19_03025 0.15 -0.2 290,589 - MPMX19_03025 0.15 -0.9 290,589 - MPMX19_03025 0.15 -0.8 290,589 - MPMX19_03025 0.15 +0.2 290,589 - MPMX19_03025 0.15 -0.2 290,589 - MPMX19_03025 0.15 -0.4 290,589 - MPMX19_03025 0.15 -0.3 290,589 - MPMX19_03025 0.15 -2.2 290,589 - MPMX19_03025 0.15 -0.1 290,589 - MPMX19_03025 0.15 +0.2 290,589 - MPMX19_03025 0.15 +0.7 290,589 - MPMX19_03025 0.15 +0.4 290,589 - MPMX19_03025 0.15 +0.4 290,589 - MPMX19_03025 0.15 -0.6 290,589 - MPMX19_03025 0.15 -0.0 290,589 - MPMX19_03025 0.15 +0.6 290,589 - MPMX19_03025 0.15 -1.9 290,744 + MPMX19_03025 0.29 -0.1 290,744 + MPMX19_03025 0.29 +1.1 290,744 + MPMX19_03025 0.29 -0.7 290,745 - MPMX19_03025 0.29 +0.3 290,745 - MPMX19_03025 0.29 -0.9 290,792 + MPMX19_03025 0.33 -0.3 290,792 + MPMX19_03025 0.33 -0.6 290,792 + MPMX19_03025 0.33 +0.7 290,792 + MPMX19_03025 0.33 -3.9 290,792 + MPMX19_03025 0.33 -0.8 290,793 - MPMX19_03025 0.34 +0.5 290,793 - MPMX19_03025 0.34 -0.3 290,793 - MPMX19_03025 0.34 -0.5 290,793 - MPMX19_03025 0.34 +0.1 290,793 - MPMX19_03025 0.34 +1.0 290,793 - MPMX19_03025 0.34 -2.0 290,807 + MPMX19_03025 0.35 -0.1 290,807 + MPMX19_03025 0.35 -0.6 290,807 + MPMX19_03025 0.35 +0.4 290,807 + MPMX19_03025 0.35 +0.4 290,807 + MPMX19_03025 0.35 -0.6 290,807 + MPMX19_03025 0.35 -2.2 291,020 + MPMX19_03025 0.54 -0.1 291,020 + MPMX19_03025 0.54 +0.4 291,020 + MPMX19_03025 0.54 +0.7 291,020 + MPMX19_03025 0.54 +0.9 291,020 + MPMX19_03025 0.54 -0.7 291,020 + MPMX19_03025 0.54 -0.3 291,020 + MPMX19_03025 0.54 -2.9 291,020 + MPMX19_03025 0.54 -2.3 291,021 - MPMX19_03025 0.54 -2.0 291,021 - MPMX19_03025 0.54 -0.5 291,021 - MPMX19_03025 0.54 -1.2 291,021 - MPMX19_03025 0.54 +0.4 291,021 - MPMX19_03025 0.54 +0.0 291,021 - MPMX19_03025 0.54 +0.1 291,021 - MPMX19_03025 0.54 +0.4 291,021 - MPMX19_03025 0.54 +1.0 291,119 + MPMX19_03025 0.63 -1.5 291,119 + MPMX19_03025 0.63 -1.5 291,119 + MPMX19_03025 0.63 -0.1 291,119 + MPMX19_03025 0.63 -2.3 291,119 + MPMX19_03025 0.63 +0.3 291,119 + MPMX19_03025 0.63 +0.1 291,119 + MPMX19_03025 0.63 +1.7 291,119 + MPMX19_03025 0.63 -1.4 291,119 + MPMX19_03025 0.63 -0.5 291,119 + MPMX19_03025 0.63 +1.2 291,119 + MPMX19_03025 0.63 -2.3 291,120 - MPMX19_03025 0.63 -0.1 291,120 - MPMX19_03025 0.63 +0.5 291,120 - MPMX19_03025 0.63 +0.1 291,120 - MPMX19_03025 0.63 -0.9 291,120 - MPMX19_03025 0.63 -1.6 291,120 - MPMX19_03025 0.63 -0.0 291,120 - MPMX19_03025 0.63 +0.5 291,120 - MPMX19_03025 0.63 +0.7 291,120 - MPMX19_03025 0.63 -0.5 291,120 - MPMX19_03025 0.63 -0.5 291,120 - MPMX19_03025 0.63 +0.4 291,120 - MPMX19_03025 0.63 -0.3 291,120 - MPMX19_03025 0.63 +0.3 291,149 + MPMX19_03025 0.65 -0.6 291,149 + MPMX19_03025 0.65 +0.1 291,149 + MPMX19_03025 0.65 -0.5 291,149 + MPMX19_03025 0.65 +0.7 291,149 + MPMX19_03025 0.65 -0.0 291,149 + MPMX19_03025 0.65 -1.3 291,150 - MPMX19_03025 0.65 -1.6 291,150 - MPMX19_03025 0.65 +1.5 291,150 - MPMX19_03025 0.65 -0.7 291,215 + MPMX19_03025 0.71 -0.3 291,215 + MPMX19_03025 0.71 -1.3 291,215 + MPMX19_03025 0.71 +0.1 291,215 + MPMX19_03025 0.71 -0.3 291,215 + MPMX19_03025 0.71 +0.7 291,215 + MPMX19_03025 0.71 +0.1 291,216 - MPMX19_03025 0.71 +0.4 291,216 - MPMX19_03025 0.71 +0.1 291,216 - MPMX19_03025 0.71 +0.1 291,216 - MPMX19_03025 0.71 +2.2 291,216 - MPMX19_03025 0.71 -1.6
Or see this region's nucleotide sequence