Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02804 and MPMX19_02805 are separated by 191 nucleotides MPMX19_02805 and MPMX19_02806 are separated by 30 nucleotides
MPMX19_02804: MPMX19_02804 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 38,806 to 39,612
_02804
MPMX19_02805: MPMX19_02805 - putative transporter, at 39,804 to 41,057
_02805
MPMX19_02806: MPMX19_02806 - HTH-type transcriptional regulator DmlR, at 41,088 to 42,104
_02806
Position (kb) 39
40
41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 38.848 kb on + strand at 39.080 kb on + strand, within MPMX19_02804 at 39.081 kb on - strand, within MPMX19_02804 at 39.081 kb on - strand, within MPMX19_02804 at 39.343 kb on + strand, within MPMX19_02804 at 39.343 kb on + strand, within MPMX19_02804 at 39.344 kb on - strand, within MPMX19_02804 at 39.344 kb on - strand, within MPMX19_02804 at 39.530 kb on + strand, within MPMX19_02804 at 39.531 kb on - strand, within MPMX19_02804 at 39.531 kb on - strand, within MPMX19_02804 at 39.557 kb on + strand at 39.557 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.566 kb on + strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.567 kb on - strand at 39.649 kb on + strand at 39.649 kb on + strand at 39.650 kb on - strand at 39.650 kb on - strand at 39.997 kb on + strand, within MPMX19_02805 at 39.997 kb on + strand, within MPMX19_02805 at 39.998 kb on - strand, within MPMX19_02805 at 39.998 kb on - strand, within MPMX19_02805 at 40.406 kb on - strand, within MPMX19_02805 at 40.406 kb on - strand, within MPMX19_02805 at 40.816 kb on + strand, within MPMX19_02805 at 40.816 kb on + strand, within MPMX19_02805 at 40.817 kb on - strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.906 kb on + strand, within MPMX19_02805 at 40.907 kb on - strand, within MPMX19_02805 at 40.907 kb on - strand, within MPMX19_02805 at 40.907 kb on - strand, within MPMX19_02805 at 40.909 kb on + strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 40.910 kb on - strand, within MPMX19_02805 at 41.103 kb on + strand at 41.103 kb on + strand at 41.103 kb on + strand at 41.103 kb on + strand at 41.103 kb on + strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.104 kb on - strand at 41.143 kb on + strand at 41.143 kb on + strand at 41.154 kb on + strand at 41.154 kb on + strand at 41.162 kb on - strand at 41.233 kb on - strand, within MPMX19_02806 at 41.389 kb on - strand, within MPMX19_02806 at 41.532 kb on + strand, within MPMX19_02806 at 41.532 kb on + strand, within MPMX19_02806 at 41.533 kb on - strand, within MPMX19_02806 at 41.533 kb on - strand, within MPMX19_02806 at 41.778 kb on + strand, within MPMX19_02806 at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.006 kb on + strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.007 kb on - strand at 42.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 38,848 + -1.3 39,080 + MPMX19_02804 0.34 -1.3 39,081 - MPMX19_02804 0.34 +1.2 39,081 - MPMX19_02804 0.34 +0.4 39,343 + MPMX19_02804 0.67 -0.9 39,343 + MPMX19_02804 0.67 -1.6 39,344 - MPMX19_02804 0.67 +1.7 39,344 - MPMX19_02804 0.67 +0.4 39,530 + MPMX19_02804 0.90 +0.4 39,531 - MPMX19_02804 0.90 -0.3 39,531 - MPMX19_02804 0.90 +1.7 39,557 + +0.3 39,557 + +1.5 39,566 + +0.2 39,566 + -0.7 39,566 + -0.2 39,566 + -0.1 39,566 + -0.5 39,566 + -1.0 39,566 + -1.5 39,566 + +1.2 39,566 + -0.7 39,566 + -0.6 39,566 + +0.6 39,566 + -0.3 39,566 + -1.1 39,566 + +0.6 39,566 + -0.5 39,566 + -0.1 39,566 + -1.4 39,566 + -0.5 39,567 - +0.7 39,567 - -1.3 39,567 - -0.4 39,567 - +0.8 39,567 - -1.7 39,567 - -0.7 39,567 - +0.9 39,567 - -2.4 39,567 - +0.9 39,567 - +0.1 39,567 - -0.3 39,649 + +0.7 39,649 + -0.3 39,650 - -0.4 39,650 - +0.1 39,997 + MPMX19_02805 0.15 -1.9 39,997 + MPMX19_02805 0.15 -2.3 39,998 - MPMX19_02805 0.15 -1.0 39,998 - MPMX19_02805 0.15 -1.6 40,406 - MPMX19_02805 0.48 -1.6 40,406 - MPMX19_02805 0.48 +1.0 40,816 + MPMX19_02805 0.81 -0.8 40,816 + MPMX19_02805 0.81 -0.1 40,817 - MPMX19_02805 0.81 -0.8 40,906 + MPMX19_02805 0.88 -0.6 40,906 + MPMX19_02805 0.88 -0.1 40,906 + MPMX19_02805 0.88 -1.2 40,906 + MPMX19_02805 0.88 -0.9 40,906 + MPMX19_02805 0.88 +0.1 40,906 + MPMX19_02805 0.88 +0.6 40,906 + MPMX19_02805 0.88 -0.9 40,907 - MPMX19_02805 0.88 -2.2 40,907 - MPMX19_02805 0.88 -0.1 40,907 - MPMX19_02805 0.88 -1.5 40,909 + MPMX19_02805 0.88 +2.1 40,910 - MPMX19_02805 0.88 -2.1 40,910 - MPMX19_02805 0.88 -1.1 40,910 - MPMX19_02805 0.88 -1.9 40,910 - MPMX19_02805 0.88 -0.4 40,910 - MPMX19_02805 0.88 -0.3 40,910 - MPMX19_02805 0.88 -1.2 41,103 + +0.4 41,103 + -0.2 41,103 + -0.5 41,103 + -0.8 41,103 + +0.4 41,104 - -0.6 41,104 - -1.2 41,104 - -0.4 41,104 - -1.0 41,104 - -1.1 41,104 - -0.9 41,104 - -2.7 41,104 - -1.4 41,104 - -0.7 41,104 - -1.4 41,104 - -1.7 41,104 - -0.2 41,143 + -1.3 41,143 + -1.9 41,154 + -0.5 41,154 + -0.7 41,162 - -1.3 41,233 - MPMX19_02806 0.14 +0.2 41,389 - MPMX19_02806 0.30 +2.0 41,532 + MPMX19_02806 0.44 -1.2 41,532 + MPMX19_02806 0.44 +0.0 41,533 - MPMX19_02806 0.44 -0.5 41,533 - MPMX19_02806 0.44 +0.7 41,778 + MPMX19_02806 0.68 +0.1 42,006 + -1.1 42,006 + +1.4 42,006 + +2.2 42,006 + -2.4 42,006 + -0.7 42,006 + -0.0 42,007 - -0.6 42,007 - -0.4 42,007 - +1.3 42,007 - +0.1
Or see this region's nucleotide sequence