Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02790 and MPMX19_02791 are separated by 274 nucleotides MPMX19_02791 and MPMX19_02792 are separated by 47 nucleotides
MPMX19_02790: MPMX19_02790 - Long-chain-fatty-acid--CoA ligase, at 22,503 to 24,110
_02790
MPMX19_02791: MPMX19_02791 - Haloalkane dehalogenase, at 24,385 to 26,001
_02791
MPMX19_02792: MPMX19_02792 - HTH-type transcriptional regulator KipR, at 26,049 to 26,942
_02792
Position (kb) 24
25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.440 kb on + strand, within MPMX19_02790 at 23.440 kb on + strand, within MPMX19_02790 at 23.533 kb on + strand, within MPMX19_02790 at 23.533 kb on + strand, within MPMX19_02790 at 23.533 kb on + strand, within MPMX19_02790 at 23.534 kb on - strand, within MPMX19_02790 at 23.534 kb on - strand, within MPMX19_02790 at 23.534 kb on - strand, within MPMX19_02790 at 23.534 kb on - strand, within MPMX19_02790 at 23.605 kb on - strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.939 kb on - strand, within MPMX19_02790 at 23.939 kb on - strand, within MPMX19_02790 at 23.939 kb on - strand, within MPMX19_02790 at 23.939 kb on - strand, within MPMX19_02790 at 23.939 kb on - strand, within MPMX19_02790 at 23.939 kb on - strand, within MPMX19_02790 at 23.945 kb on - strand, within MPMX19_02790 at 23.945 kb on - strand, within MPMX19_02790 at 24.037 kb on + strand at 24.037 kb on + strand at 24.038 kb on - strand at 24.038 kb on - strand at 24.038 kb on - strand at 24.152 kb on + strand at 24.152 kb on + strand at 24.152 kb on + strand at 24.153 kb on - strand at 24.153 kb on - strand at 24.153 kb on - strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.718 kb on + strand, within MPMX19_02791 at 24.718 kb on + strand, within MPMX19_02791 at 24.959 kb on - strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.148 kb on - strand, within MPMX19_02791 at 25.148 kb on - strand, within MPMX19_02791 at 25.298 kb on - strand, within MPMX19_02791 at 25.298 kb on - strand, within MPMX19_02791 at 25.298 kb on - strand, within MPMX19_02791 at 25.537 kb on + strand, within MPMX19_02791 at 25.537 kb on + strand, within MPMX19_02791 at 25.537 kb on + strand, within MPMX19_02791 at 25.537 kb on + strand, within MPMX19_02791 at 25.537 kb on + strand, within MPMX19_02791 at 25.537 kb on + strand, within MPMX19_02791 at 25.537 kb on + strand, within MPMX19_02791 at 25.538 kb on - strand, within MPMX19_02791 at 25.538 kb on - strand, within MPMX19_02791 at 25.538 kb on - strand, within MPMX19_02791 at 25.538 kb on - strand, within MPMX19_02791 at 25.538 kb on - strand, within MPMX19_02791 at 25.538 kb on - strand, within MPMX19_02791 at 25.538 kb on - strand, within MPMX19_02791 at 25.538 kb on - strand, within MPMX19_02791 at 25.538 kb on - strand, within MPMX19_02791 at 25.538 kb on - strand, within MPMX19_02791 at 25.538 kb on - strand, within MPMX19_02791 at 25.723 kb on + strand, within MPMX19_02791 at 25.724 kb on - strand, within MPMX19_02791 at 25.735 kb on + strand, within MPMX19_02791 at 25.736 kb on - strand, within MPMX19_02791 at 25.753 kb on + strand, within MPMX19_02791 at 25.900 kb on + strand at 25.925 kb on + strand at 25.925 kb on + strand at 25.926 kb on - strand at 25.926 kb on - strand at 25.946 kb on - strand at 25.999 kb on + strand at 25.999 kb on + strand at 25.999 kb on + strand at 26.000 kb on - strand at 26.000 kb on - strand at 26.000 kb on - strand at 26.007 kb on + strand at 26.007 kb on + strand at 26.007 kb on + strand at 26.007 kb on + strand at 26.008 kb on - strand at 26.008 kb on - strand at 26.008 kb on - strand at 26.110 kb on + strand at 26.110 kb on + strand at 26.111 kb on - strand at 26.373 kb on - strand, within MPMX19_02792 at 26.373 kb on - strand, within MPMX19_02792 at 26.416 kb on + strand, within MPMX19_02792 at 26.416 kb on + strand, within MPMX19_02792 at 26.417 kb on - strand, within MPMX19_02792 at 26.417 kb on - strand, within MPMX19_02792 at 26.417 kb on - strand, within MPMX19_02792 at 26.542 kb on + strand, within MPMX19_02792 at 26.542 kb on + strand, within MPMX19_02792 at 26.543 kb on - strand, within MPMX19_02792 at 26.543 kb on - strand, within MPMX19_02792 at 26.543 kb on - strand, within MPMX19_02792 at 26.671 kb on + strand, within MPMX19_02792 at 26.672 kb on - strand, within MPMX19_02792 at 26.672 kb on - strand, within MPMX19_02792 at 26.672 kb on - strand, within MPMX19_02792 at 26.672 kb on - strand, within MPMX19_02792 at 26.672 kb on - strand, within MPMX19_02792 at 26.804 kb on - strand, within MPMX19_02792 at 26.804 kb on - strand, within MPMX19_02792 at 26.942 kb on + strand at 26.942 kb on + strand at 26.943 kb on - strand at 26.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 23,440 + MPMX19_02790 0.58 +0.1 23,440 + MPMX19_02790 0.58 +0.7 23,533 + MPMX19_02790 0.64 +0.2 23,533 + MPMX19_02790 0.64 +0.2 23,533 + MPMX19_02790 0.64 -1.5 23,534 - MPMX19_02790 0.64 +0.7 23,534 - MPMX19_02790 0.64 -0.1 23,534 - MPMX19_02790 0.64 +0.6 23,534 - MPMX19_02790 0.64 +0.0 23,605 - MPMX19_02790 0.69 -1.2 23,938 + MPMX19_02790 0.89 -0.3 23,938 + MPMX19_02790 0.89 -0.9 23,938 + MPMX19_02790 0.89 -0.6 23,938 + MPMX19_02790 0.89 -0.8 23,938 + MPMX19_02790 0.89 -0.6 23,938 + MPMX19_02790 0.89 +2.0 23,938 + MPMX19_02790 0.89 -1.1 23,938 + MPMX19_02790 0.89 +1.7 23,938 + MPMX19_02790 0.89 -1.9 23,938 + MPMX19_02790 0.89 -1.1 23,938 + MPMX19_02790 0.89 -1.9 23,938 + MPMX19_02790 0.89 -1.2 23,939 - MPMX19_02790 0.89 -0.4 23,939 - MPMX19_02790 0.89 -0.0 23,939 - MPMX19_02790 0.89 -1.5 23,939 - MPMX19_02790 0.89 -0.3 23,939 - MPMX19_02790 0.89 -0.0 23,939 - MPMX19_02790 0.89 +0.4 23,945 - MPMX19_02790 0.90 -0.1 23,945 - MPMX19_02790 0.90 -0.4 24,037 + -0.9 24,037 + -0.1 24,038 - -1.3 24,038 - -1.0 24,038 - -0.6 24,152 + +0.6 24,152 + +0.5 24,152 + -0.4 24,153 - -0.7 24,153 - -0.4 24,153 - +0.7 24,400 + +1.0 24,400 + -1.4 24,400 + +0.1 24,400 + -2.3 24,400 + -0.5 24,400 + -1.6 24,400 + +0.4 24,400 + -0.6 24,400 + -0.1 24,401 - +0.9 24,401 - -1.3 24,401 - -0.6 24,401 - -0.4 24,401 - +1.1 24,401 - +0.1 24,401 - +0.1 24,401 - -0.1 24,718 + MPMX19_02791 0.21 -1.3 24,718 + MPMX19_02791 0.21 -1.9 24,959 - MPMX19_02791 0.35 -1.1 25,029 + MPMX19_02791 0.40 -0.9 25,029 + MPMX19_02791 0.40 +0.1 25,029 + MPMX19_02791 0.40 -0.6 25,029 + MPMX19_02791 0.40 +1.2 25,029 + MPMX19_02791 0.40 +0.2 25,029 + MPMX19_02791 0.40 -0.3 25,029 + MPMX19_02791 0.40 -0.3 25,030 - MPMX19_02791 0.40 -1.6 25,030 - MPMX19_02791 0.40 -1.1 25,030 - MPMX19_02791 0.40 -0.4 25,030 - MPMX19_02791 0.40 -1.6 25,030 - MPMX19_02791 0.40 -0.3 25,030 - MPMX19_02791 0.40 +0.9 25,030 - MPMX19_02791 0.40 -0.7 25,030 - MPMX19_02791 0.40 -0.4 25,148 - MPMX19_02791 0.47 -1.0 25,148 - MPMX19_02791 0.47 +0.4 25,298 - MPMX19_02791 0.56 -1.1 25,298 - MPMX19_02791 0.56 -2.7 25,298 - MPMX19_02791 0.56 -0.1 25,537 + MPMX19_02791 0.71 -0.7 25,537 + MPMX19_02791 0.71 -0.0 25,537 + MPMX19_02791 0.71 +0.1 25,537 + MPMX19_02791 0.71 +0.9 25,537 + MPMX19_02791 0.71 +0.5 25,537 + MPMX19_02791 0.71 +0.1 25,537 + MPMX19_02791 0.71 -0.4 25,538 - MPMX19_02791 0.71 -1.3 25,538 - MPMX19_02791 0.71 -0.3 25,538 - MPMX19_02791 0.71 +0.2 25,538 - MPMX19_02791 0.71 +0.5 25,538 - MPMX19_02791 0.71 -0.6 25,538 - MPMX19_02791 0.71 -0.2 25,538 - MPMX19_02791 0.71 -2.0 25,538 - MPMX19_02791 0.71 +0.7 25,538 - MPMX19_02791 0.71 -1.7 25,538 - MPMX19_02791 0.71 -1.7 25,538 - MPMX19_02791 0.71 -0.4 25,723 + MPMX19_02791 0.83 -0.0 25,724 - MPMX19_02791 0.83 +1.0 25,735 + MPMX19_02791 0.83 -1.4 25,736 - MPMX19_02791 0.84 -1.4 25,753 + MPMX19_02791 0.85 -0.1 25,900 + -1.4 25,925 + -0.7 25,925 + +1.9 25,926 - -1.7 25,926 - -1.6 25,946 - -0.2 25,999 + +0.7 25,999 + -0.6 25,999 + -0.8 26,000 - -1.4 26,000 - -1.1 26,000 - -1.3 26,007 + +0.1 26,007 + +0.4 26,007 + -0.6 26,007 + +0.4 26,008 - +0.0 26,008 - -1.1 26,008 - +0.6 26,110 + -0.1 26,110 + -1.2 26,111 - +0.5 26,373 - MPMX19_02792 0.36 +0.5 26,373 - MPMX19_02792 0.36 -0.2 26,416 + MPMX19_02792 0.41 -0.4 26,416 + MPMX19_02792 0.41 +0.2 26,417 - MPMX19_02792 0.41 +0.4 26,417 - MPMX19_02792 0.41 -1.6 26,417 - MPMX19_02792 0.41 +0.7 26,542 + MPMX19_02792 0.55 +0.4 26,542 + MPMX19_02792 0.55 +0.3 26,543 - MPMX19_02792 0.55 +0.4 26,543 - MPMX19_02792 0.55 +0.7 26,543 - MPMX19_02792 0.55 -0.1 26,671 + MPMX19_02792 0.70 +0.6 26,672 - MPMX19_02792 0.70 +0.1 26,672 - MPMX19_02792 0.70 +2.7 26,672 - MPMX19_02792 0.70 +0.6 26,672 - MPMX19_02792 0.70 -0.3 26,672 - MPMX19_02792 0.70 +1.1 26,804 - MPMX19_02792 0.84 -1.1 26,804 - MPMX19_02792 0.84 -1.1 26,942 + +0.4 26,942 + -1.4 26,943 - +0.1 26,958 - -0.0
Or see this region's nucleotide sequence