Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02717

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02716 and MPMX19_02717 are separated by 64 nucleotides MPMX19_02716: MPMX19_02716 - DNA replication and repair protein RecF, at 2,850,280 to 2,851,464 _02716 MPMX19_02717: MPMX19_02717 - Beta sliding clamp, at 2,851,529 to 2,852,659 _02717 Position (kb) 2851 2852 2853Strain fitness (log2 ratio) -2 -1 0 1at 2850.921 kb on - strand, within MPMX19_02716at 2851.373 kb on + strandat 2851.374 kb on - strandat 2852.796 kb on - strandat 2852.796 kb on - strandat 2852.796 kb on - strandat 2852.796 kb on - strandat 2852.796 kb on - strandat 2852.796 kb on - strandat 2852.806 kb on - strandat 2852.806 kb on - strandat 2852.806 kb on - strandat 2852.806 kb on - strandat 2853.641 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strandat 2853.650 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
remove
2,850,921 - MPMX19_02716 0.54 +0.7
2,851,373 + +0.8
2,851,374 - -0.1
2,852,796 - -1.4
2,852,796 - -1.6
2,852,796 - +1.2
2,852,796 - -0.9
2,852,796 - -1.6
2,852,796 - -1.4
2,852,806 - -1.5
2,852,806 - -0.1
2,852,806 - -0.4
2,852,806 - -1.3
2,853,641 + -2.4
2,853,650 + -0.0
2,853,650 + -0.6
2,853,650 + -2.6
2,853,650 + +0.4
2,853,650 + +1.2
2,853,650 + +0.1
2,853,650 + -0.1
2,853,650 + -0.3
2,853,650 + -0.6
2,853,650 + -1.6

Or see this region's nucleotide sequence