Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02103

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02102 and MPMX19_02103 are separated by 85 nucleotidesMPMX19_02103 and MPMX19_02104 overlap by 1 nucleotidesMPMX19_02104 and MPMX19_02105 are separated by 383 nucleotides MPMX19_02102: MPMX19_02102 - ATP synthase gamma chain, at 2,199,678 to 2,200,562 _02102 MPMX19_02103: MPMX19_02103 - ATP synthase subunit alpha, at 2,200,648 to 2,202,177 _02103 MPMX19_02104: MPMX19_02104 - ATP synthase subunit delta, at 2,202,177 to 2,202,746 _02104 MPMX19_02105: MPMX19_02105 - hypothetical protein, at 2,203,130 to 2,203,525 _02105 Position (kb) 2200 2201 2202 2203Strain fitness (log2 ratio) -2 -1 0 1 2at 2200.607 kb on - strandat 2200.607 kb on - strandat 2202.969 kb on + strandat 2202.995 kb on + strandat 2202.995 kb on + strandat 2202.995 kb on + strandat 2202.995 kb on + strandat 2202.995 kb on + strandat 2202.996 kb on - strandat 2202.996 kb on - strandat 2202.996 kb on - strandat 2202.996 kb on - strandat 2203.006 kb on + strandat 2203.006 kb on + strandat 2203.006 kb on + strandat 2203.006 kb on + strandat 2203.007 kb on - strandat 2203.007 kb on - strandat 2203.007 kb on - strandat 2203.007 kb on - strandat 2203.007 kb on - strandat 2203.017 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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2,200,607 - -0.2
2,200,607 - -1.3
2,202,969 + +0.4
2,202,995 + +0.6
2,202,995 + +1.2
2,202,995 + -0.6
2,202,995 + -1.0
2,202,995 + +0.2
2,202,996 - +1.6
2,202,996 - -1.1
2,202,996 - +1.2
2,202,996 - +2.0
2,203,006 + +0.8
2,203,006 + +0.5
2,203,006 + -1.3
2,203,006 + +1.1
2,203,007 - -2.1
2,203,007 - -0.0
2,203,007 - -0.4
2,203,007 - +0.5
2,203,007 - -0.5
2,203,017 + -0.7

Or see this region's nucleotide sequence