Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01906 and MPMX19_01907 are separated by 58 nucleotides MPMX19_01907 and MPMX19_01908 are separated by 45 nucleotides MPMX19_01908 and MPMX19_01909 overlap by 4 nucleotides MPMX19_01909 and MPMX19_01910 are separated by 42 nucleotides
MPMX19_01906: MPMX19_01906 - Chaperedoxin, at 1,991,551 to 1,992,516
_01906
MPMX19_01907: MPMX19_01907 - hypothetical protein, at 1,992,575 to 1,993,243
_01907
MPMX19_01908: MPMX19_01908 - hypothetical protein, at 1,993,289 to 1,993,519
_01908
MPMX19_01909: MPMX19_01909 - hypothetical protein, at 1,993,516 to 1,993,914
_01909
MPMX19_01910: MPMX19_01910 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 1,993,957 to 1,995,471
_01910
Position (kb)
1992
1993
1994 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1991.863 kb on + strand, within MPMX19_01906 at 1991.863 kb on + strand, within MPMX19_01906 at 1991.863 kb on + strand, within MPMX19_01906 at 1991.863 kb on + strand, within MPMX19_01906 at 1991.863 kb on + strand, within MPMX19_01906 at 1991.863 kb on + strand, within MPMX19_01906 at 1991.863 kb on + strand, within MPMX19_01906 at 1991.863 kb on + strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1991.864 kb on - strand, within MPMX19_01906 at 1992.064 kb on + strand, within MPMX19_01906 at 1992.064 kb on + strand, within MPMX19_01906 at 1992.064 kb on + strand, within MPMX19_01906 at 1992.064 kb on + strand, within MPMX19_01906 at 1992.064 kb on + strand, within MPMX19_01906 at 1992.064 kb on + strand, within MPMX19_01906 at 1992.064 kb on + strand, within MPMX19_01906 at 1992.064 kb on + strand, within MPMX19_01906 at 1992.065 kb on - strand, within MPMX19_01906 at 1992.065 kb on - strand, within MPMX19_01906 at 1992.065 kb on - strand, within MPMX19_01906 at 1992.065 kb on - strand, within MPMX19_01906 at 1992.065 kb on - strand, within MPMX19_01906 at 1992.106 kb on + strand, within MPMX19_01906 at 1992.106 kb on + strand, within MPMX19_01906 at 1992.106 kb on + strand, within MPMX19_01906 at 1992.106 kb on + strand, within MPMX19_01906 at 1992.106 kb on + strand, within MPMX19_01906 at 1992.107 kb on - strand, within MPMX19_01906 at 1992.107 kb on - strand, within MPMX19_01906 at 1992.107 kb on - strand, within MPMX19_01906 at 1992.107 kb on - strand, within MPMX19_01906 at 1992.107 kb on - strand, within MPMX19_01906 at 1992.107 kb on - strand, within MPMX19_01906 at 1992.107 kb on - strand, within MPMX19_01906 at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.563 kb on + strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.564 kb on - strand at 1992.698 kb on + strand, within MPMX19_01907 at 1992.698 kb on + strand, within MPMX19_01907 at 1992.699 kb on - strand, within MPMX19_01907 at 1992.699 kb on - strand, within MPMX19_01907 at 1992.736 kb on + strand, within MPMX19_01907 at 1992.736 kb on + strand, within MPMX19_01907 at 1992.736 kb on + strand, within MPMX19_01907 at 1992.737 kb on - strand, within MPMX19_01907 at 1992.737 kb on - strand, within MPMX19_01907 at 1992.737 kb on - strand, within MPMX19_01907 at 1992.794 kb on + strand, within MPMX19_01907 at 1992.794 kb on + strand, within MPMX19_01907 at 1992.794 kb on + strand, within MPMX19_01907 at 1992.794 kb on + strand, within MPMX19_01907 at 1992.794 kb on + strand, within MPMX19_01907 at 1992.794 kb on + strand, within MPMX19_01907 at 1992.794 kb on + strand, within MPMX19_01907 at 1992.794 kb on + strand, within MPMX19_01907 at 1992.795 kb on - strand, within MPMX19_01907 at 1992.795 kb on - strand, within MPMX19_01907 at 1992.795 kb on - strand, within MPMX19_01907 at 1992.795 kb on - strand, within MPMX19_01907 at 1992.918 kb on - strand, within MPMX19_01907 at 1993.019 kb on + strand, within MPMX19_01907 at 1993.019 kb on + strand, within MPMX19_01907 at 1993.019 kb on + strand, within MPMX19_01907 at 1993.019 kb on + strand, within MPMX19_01907 at 1993.019 kb on + strand, within MPMX19_01907 at 1993.019 kb on + strand, within MPMX19_01907 at 1993.019 kb on + strand, within MPMX19_01907 at 1993.019 kb on + strand, within MPMX19_01907 at 1993.019 kb on + strand, within MPMX19_01907 at 1993.019 kb on + strand, within MPMX19_01907 at 1993.019 kb on + strand, within MPMX19_01907 at 1993.019 kb on + strand, within MPMX19_01907 at 1993.020 kb on - strand, within MPMX19_01907 at 1993.020 kb on - strand, within MPMX19_01907 at 1993.020 kb on - strand, within MPMX19_01907 at 1993.020 kb on - strand, within MPMX19_01907 at 1993.020 kb on - strand, within MPMX19_01907 at 1993.020 kb on - strand, within MPMX19_01907 at 1993.020 kb on - strand, within MPMX19_01907 at 1993.020 kb on - strand, within MPMX19_01907 at 1993.020 kb on - strand, within MPMX19_01907 at 1993.020 kb on - strand, within MPMX19_01907 at 1993.020 kb on - strand, within MPMX19_01907 at 1993.245 kb on + strand at 1993.245 kb on + strand at 1993.245 kb on + strand at 1993.636 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.762 kb on + strand, within MPMX19_01909 at 1993.763 kb on - strand, within MPMX19_01909 at 1993.763 kb on - strand, within MPMX19_01909 at 1993.763 kb on - strand, within MPMX19_01909 at 1993.763 kb on - strand, within MPMX19_01909 at 1993.819 kb on + strand, within MPMX19_01909 at 1993.819 kb on + strand, within MPMX19_01909 at 1993.819 kb on + strand, within MPMX19_01909 at 1993.819 kb on + strand, within MPMX19_01909 at 1993.819 kb on + strand, within MPMX19_01909 at 1993.819 kb on + strand, within MPMX19_01909 at 1993.819 kb on + strand, within MPMX19_01909 at 1993.819 kb on + strand, within MPMX19_01909 at 1993.819 kb on + strand, within MPMX19_01909 at 1993.819 kb on + strand, within MPMX19_01909 at 1993.819 kb on + strand, within MPMX19_01909 at 1993.819 kb on + strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.820 kb on - strand, within MPMX19_01909 at 1993.825 kb on + strand, within MPMX19_01909 at 1993.825 kb on + strand, within MPMX19_01909 at 1993.826 kb on - strand, within MPMX19_01909 at 1993.826 kb on - strand, within MPMX19_01909 at 1993.826 kb on - strand, within MPMX19_01909 at 1993.826 kb on - strand, within MPMX19_01909 at 1993.864 kb on + strand, within MPMX19_01909 at 1993.864 kb on + strand, within MPMX19_01909 at 1993.864 kb on + strand, within MPMX19_01909 at 1993.864 kb on + strand, within MPMX19_01909 at 1993.864 kb on + strand, within MPMX19_01909 at 1993.864 kb on + strand, within MPMX19_01909 at 1993.865 kb on - strand, within MPMX19_01909 at 1993.865 kb on - strand, within MPMX19_01909 at 1993.865 kb on - strand, within MPMX19_01909 at 1993.893 kb on + strand at 1993.893 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 1,991,863 + MPMX19_01906 0.32 +0.4 1,991,863 + MPMX19_01906 0.32 -0.4 1,991,863 + MPMX19_01906 0.32 -0.5 1,991,863 + MPMX19_01906 0.32 -0.6 1,991,863 + MPMX19_01906 0.32 +0.1 1,991,863 + MPMX19_01906 0.32 +1.7 1,991,863 + MPMX19_01906 0.32 -0.3 1,991,863 + MPMX19_01906 0.32 -1.7 1,991,864 - MPMX19_01906 0.32 +0.1 1,991,864 - MPMX19_01906 0.32 +0.1 1,991,864 - MPMX19_01906 0.32 -0.3 1,991,864 - MPMX19_01906 0.32 +0.2 1,991,864 - MPMX19_01906 0.32 -1.6 1,991,864 - MPMX19_01906 0.32 -0.9 1,991,864 - MPMX19_01906 0.32 -0.2 1,991,864 - MPMX19_01906 0.32 -0.2 1,991,864 - MPMX19_01906 0.32 -1.0 1,991,864 - MPMX19_01906 0.32 -1.7 1,991,864 - MPMX19_01906 0.32 -1.7 1,991,864 - MPMX19_01906 0.32 -1.2 1,991,864 - MPMX19_01906 0.32 -0.8 1,992,064 + MPMX19_01906 0.53 -0.3 1,992,064 + MPMX19_01906 0.53 -1.6 1,992,064 + MPMX19_01906 0.53 -0.3 1,992,064 + MPMX19_01906 0.53 +0.9 1,992,064 + MPMX19_01906 0.53 +0.9 1,992,064 + MPMX19_01906 0.53 -1.0 1,992,064 + MPMX19_01906 0.53 +0.3 1,992,064 + MPMX19_01906 0.53 -0.9 1,992,065 - MPMX19_01906 0.53 +0.0 1,992,065 - MPMX19_01906 0.53 +0.3 1,992,065 - MPMX19_01906 0.53 +0.1 1,992,065 - MPMX19_01906 0.53 +1.1 1,992,065 - MPMX19_01906 0.53 +0.7 1,992,106 + MPMX19_01906 0.57 -0.0 1,992,106 + MPMX19_01906 0.57 -0.1 1,992,106 + MPMX19_01906 0.57 +1.3 1,992,106 + MPMX19_01906 0.57 -1.8 1,992,106 + MPMX19_01906 0.57 -0.1 1,992,107 - MPMX19_01906 0.58 -0.5 1,992,107 - MPMX19_01906 0.58 -1.3 1,992,107 - MPMX19_01906 0.58 -0.4 1,992,107 - MPMX19_01906 0.58 +0.6 1,992,107 - MPMX19_01906 0.58 -1.1 1,992,107 - MPMX19_01906 0.58 -0.5 1,992,107 - MPMX19_01906 0.58 +0.5 1,992,563 + -1.2 1,992,563 + -0.5 1,992,563 + -1.3 1,992,563 + -0.1 1,992,563 + -0.3 1,992,563 + -0.6 1,992,563 + -0.5 1,992,563 + -2.4 1,992,563 + +1.9 1,992,563 + -0.4 1,992,563 + +0.5 1,992,563 + -0.0 1,992,563 + +1.1 1,992,563 + +0.3 1,992,563 + +1.0 1,992,563 + -1.7 1,992,564 - -0.5 1,992,564 - -1.5 1,992,564 - +1.9 1,992,564 - -0.2 1,992,564 - -1.3 1,992,564 - -0.1 1,992,564 - -0.4 1,992,564 - +1.2 1,992,564 - -1.5 1,992,564 - -0.3 1,992,564 - +2.1 1,992,564 - -0.5 1,992,564 - -0.3 1,992,564 - -0.9 1,992,698 + MPMX19_01907 0.18 -0.9 1,992,698 + MPMX19_01907 0.18 -0.5 1,992,699 - MPMX19_01907 0.19 +0.9 1,992,699 - MPMX19_01907 0.19 +0.3 1,992,736 + MPMX19_01907 0.24 -0.1 1,992,736 + MPMX19_01907 0.24 +0.0 1,992,736 + MPMX19_01907 0.24 -0.5 1,992,737 - MPMX19_01907 0.24 +1.0 1,992,737 - MPMX19_01907 0.24 +0.2 1,992,737 - MPMX19_01907 0.24 +0.7 1,992,794 + MPMX19_01907 0.33 -1.6 1,992,794 + MPMX19_01907 0.33 +0.9 1,992,794 + MPMX19_01907 0.33 -0.4 1,992,794 + MPMX19_01907 0.33 +0.9 1,992,794 + MPMX19_01907 0.33 -0.5 1,992,794 + MPMX19_01907 0.33 +0.6 1,992,794 + MPMX19_01907 0.33 -0.5 1,992,794 + MPMX19_01907 0.33 +0.3 1,992,795 - MPMX19_01907 0.33 +0.3 1,992,795 - MPMX19_01907 0.33 +0.7 1,992,795 - MPMX19_01907 0.33 +0.9 1,992,795 - MPMX19_01907 0.33 -0.1 1,992,918 - MPMX19_01907 0.51 +1.2 1,993,019 + MPMX19_01907 0.66 -0.2 1,993,019 + MPMX19_01907 0.66 -0.2 1,993,019 + MPMX19_01907 0.66 +0.9 1,993,019 + MPMX19_01907 0.66 -0.5 1,993,019 + MPMX19_01907 0.66 +0.3 1,993,019 + MPMX19_01907 0.66 +1.4 1,993,019 + MPMX19_01907 0.66 -0.0 1,993,019 + MPMX19_01907 0.66 +0.4 1,993,019 + MPMX19_01907 0.66 +1.3 1,993,019 + MPMX19_01907 0.66 +0.4 1,993,019 + MPMX19_01907 0.66 +0.0 1,993,019 + MPMX19_01907 0.66 -1.2 1,993,020 - MPMX19_01907 0.67 +0.0 1,993,020 - MPMX19_01907 0.67 +1.0 1,993,020 - MPMX19_01907 0.67 -0.0 1,993,020 - MPMX19_01907 0.67 -0.9 1,993,020 - MPMX19_01907 0.67 -0.4 1,993,020 - MPMX19_01907 0.67 -1.2 1,993,020 - MPMX19_01907 0.67 -0.9 1,993,020 - MPMX19_01907 0.67 +1.1 1,993,020 - MPMX19_01907 0.67 +2.2 1,993,020 - MPMX19_01907 0.67 -0.3 1,993,020 - MPMX19_01907 0.67 -1.0 1,993,245 + -1.5 1,993,245 + +0.0 1,993,245 + +2.1 1,993,636 + MPMX19_01909 0.30 +0.3 1,993,762 + MPMX19_01909 0.62 +0.3 1,993,762 + MPMX19_01909 0.62 -1.1 1,993,762 + MPMX19_01909 0.62 +0.2 1,993,762 + MPMX19_01909 0.62 +0.1 1,993,762 + MPMX19_01909 0.62 +0.0 1,993,762 + MPMX19_01909 0.62 -0.9 1,993,762 + MPMX19_01909 0.62 -0.4 1,993,762 + MPMX19_01909 0.62 -0.1 1,993,762 + MPMX19_01909 0.62 -0.2 1,993,762 + MPMX19_01909 0.62 -0.5 1,993,762 + MPMX19_01909 0.62 -0.9 1,993,762 + MPMX19_01909 0.62 +0.5 1,993,762 + MPMX19_01909 0.62 -0.4 1,993,762 + MPMX19_01909 0.62 -1.4 1,993,762 + MPMX19_01909 0.62 +0.0 1,993,763 - MPMX19_01909 0.62 -1.3 1,993,763 - MPMX19_01909 0.62 -0.2 1,993,763 - MPMX19_01909 0.62 -1.1 1,993,763 - MPMX19_01909 0.62 +0.3 1,993,819 + MPMX19_01909 0.76 +0.6 1,993,819 + MPMX19_01909 0.76 -1.7 1,993,819 + MPMX19_01909 0.76 +0.3 1,993,819 + MPMX19_01909 0.76 -1.3 1,993,819 + MPMX19_01909 0.76 -0.5 1,993,819 + MPMX19_01909 0.76 -0.6 1,993,819 + MPMX19_01909 0.76 -0.8 1,993,819 + MPMX19_01909 0.76 -1.2 1,993,819 + MPMX19_01909 0.76 -0.0 1,993,819 + MPMX19_01909 0.76 -0.4 1,993,819 + MPMX19_01909 0.76 -1.0 1,993,819 + MPMX19_01909 0.76 +0.8 1,993,820 - MPMX19_01909 0.76 +0.5 1,993,820 - MPMX19_01909 0.76 -2.4 1,993,820 - MPMX19_01909 0.76 +0.3 1,993,820 - MPMX19_01909 0.76 -0.3 1,993,820 - MPMX19_01909 0.76 -0.3 1,993,820 - MPMX19_01909 0.76 +1.0 1,993,820 - MPMX19_01909 0.76 +0.3 1,993,820 - MPMX19_01909 0.76 +0.0 1,993,820 - MPMX19_01909 0.76 +0.3 1,993,820 - MPMX19_01909 0.76 -2.5 1,993,820 - MPMX19_01909 0.76 -0.6 1,993,820 - MPMX19_01909 0.76 +0.1 1,993,820 - MPMX19_01909 0.76 -0.5 1,993,820 - MPMX19_01909 0.76 -1.3 1,993,825 + MPMX19_01909 0.77 +0.4 1,993,825 + MPMX19_01909 0.77 -1.5 1,993,826 - MPMX19_01909 0.78 +0.1 1,993,826 - MPMX19_01909 0.78 +0.1 1,993,826 - MPMX19_01909 0.78 -1.0 1,993,826 - MPMX19_01909 0.78 -1.1 1,993,864 + MPMX19_01909 0.87 -2.6 1,993,864 + MPMX19_01909 0.87 -0.1 1,993,864 + MPMX19_01909 0.87 +0.2 1,993,864 + MPMX19_01909 0.87 -0.7 1,993,864 + MPMX19_01909 0.87 -0.9 1,993,864 + MPMX19_01909 0.87 -0.7 1,993,865 - MPMX19_01909 0.87 -0.9 1,993,865 - MPMX19_01909 0.87 -0.9 1,993,865 - MPMX19_01909 0.87 -1.3 1,993,893 + -1.3 1,993,893 + -0.2
Or see this region's nucleotide sequence