Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01816 and MPMX19_01817 are separated by 70 nucleotides MPMX19_01817 and MPMX19_01818 are separated by 364 nucleotides MPMX19_01818 and MPMX19_01819 are separated by 123 nucleotides MPMX19_01819 and MPMX19_01820 overlap by 4 nucleotides
MPMX19_01816: MPMX19_01816 - hypothetical protein, at 1,899,732 to 1,901,072
_01816
MPMX19_01817: MPMX19_01817 - hypothetical protein, at 1,901,143 to 1,901,334
_01817
MPMX19_01818: MPMX19_01818 - hypothetical protein, at 1,901,699 to 1,902,148
_01818
MPMX19_01819: MPMX19_01819 - Holin-like protein CidA, at 1,902,272 to 1,902,667
_01819
MPMX19_01820: MPMX19_01820 - Inner membrane protein YohK, at 1,902,664 to 1,903,386
_01820
Position (kb)
1901
1902
1903 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1901.105 kb on + strand at 1901.105 kb on + strand at 1901.375 kb on + strand at 1901.471 kb on + strand at 1901.511 kb on + strand at 1901.511 kb on + strand at 1901.561 kb on + strand at 1901.561 kb on + strand at 1901.562 kb on - strand at 1901.562 kb on - strand at 1901.565 kb on + strand at 1901.565 kb on + strand at 1901.565 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.636 kb on + strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.637 kb on - strand at 1901.711 kb on + strand at 1901.711 kb on + strand at 1901.711 kb on + strand at 1901.711 kb on + strand at 1901.712 kb on - strand at 1901.712 kb on - strand at 1901.726 kb on + strand at 1901.727 kb on - strand at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.840 kb on + strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1901.841 kb on - strand, within MPMX19_01818 at 1902.025 kb on + strand, within MPMX19_01818 at 1902.025 kb on + strand, within MPMX19_01818 at 1902.025 kb on + strand, within MPMX19_01818 at 1902.025 kb on + strand, within MPMX19_01818 at 1902.026 kb on - strand, within MPMX19_01818 at 1902.026 kb on - strand, within MPMX19_01818 at 1902.026 kb on - strand, within MPMX19_01818 at 1902.026 kb on - strand, within MPMX19_01818 at 1902.026 kb on - strand, within MPMX19_01818 at 1902.147 kb on - strand at 1902.147 kb on - strand at 1902.233 kb on + strand at 1902.233 kb on + strand at 1902.233 kb on + strand at 1902.233 kb on + strand at 1902.234 kb on - strand at 1902.420 kb on + strand, within MPMX19_01819 at 1902.420 kb on + strand, within MPMX19_01819 at 1902.420 kb on + strand, within MPMX19_01819 at 1902.420 kb on + strand, within MPMX19_01819 at 1902.421 kb on - strand, within MPMX19_01819 at 1902.421 kb on - strand, within MPMX19_01819 at 1902.421 kb on - strand, within MPMX19_01819 at 1902.421 kb on - strand, within MPMX19_01819 at 1902.421 kb on - strand, within MPMX19_01819 at 1902.421 kb on - strand, within MPMX19_01819 at 1902.486 kb on + strand, within MPMX19_01819 at 1902.486 kb on + strand, within MPMX19_01819 at 1902.487 kb on - strand, within MPMX19_01819 at 1902.487 kb on - strand, within MPMX19_01819 at 1902.487 kb on - strand, within MPMX19_01819 at 1902.487 kb on - strand, within MPMX19_01819 at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.694 kb on + strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.695 kb on - strand at 1902.742 kb on + strand, within MPMX19_01820 at 1902.742 kb on + strand, within MPMX19_01820 at 1902.743 kb on - strand, within MPMX19_01820 at 1902.743 kb on - strand, within MPMX19_01820 at 1902.803 kb on + strand, within MPMX19_01820 at 1902.803 kb on + strand, within MPMX19_01820 at 1902.804 kb on - strand, within MPMX19_01820 at 1902.804 kb on - strand, within MPMX19_01820 at 1902.804 kb on - strand, within MPMX19_01820 at 1902.804 kb on - strand, within MPMX19_01820 at 1902.804 kb on - strand, within MPMX19_01820 at 1902.862 kb on + strand, within MPMX19_01820 at 1902.862 kb on + strand, within MPMX19_01820 at 1902.862 kb on + strand, within MPMX19_01820 at 1902.862 kb on + strand, within MPMX19_01820 at 1902.862 kb on + strand, within MPMX19_01820 at 1902.862 kb on + strand, within MPMX19_01820 at 1902.862 kb on + strand, within MPMX19_01820 at 1902.862 kb on + strand, within MPMX19_01820 at 1902.862 kb on + strand, within MPMX19_01820 at 1902.862 kb on + strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.863 kb on - strand, within MPMX19_01820 at 1902.931 kb on + strand, within MPMX19_01820 at 1902.931 kb on + strand, within MPMX19_01820 at 1902.931 kb on + strand, within MPMX19_01820 at 1902.931 kb on + strand, within MPMX19_01820 at 1902.931 kb on + strand, within MPMX19_01820 at 1902.931 kb on + strand, within MPMX19_01820 at 1902.931 kb on + strand, within MPMX19_01820 at 1902.931 kb on + strand, within MPMX19_01820 at 1902.931 kb on + strand, within MPMX19_01820 at 1902.931 kb on + strand, within MPMX19_01820 at 1902.932 kb on - strand, within MPMX19_01820 at 1902.932 kb on - strand, within MPMX19_01820 at 1902.932 kb on - strand, within MPMX19_01820 at 1902.932 kb on - strand, within MPMX19_01820 at 1902.932 kb on - strand, within MPMX19_01820 at 1902.932 kb on - strand, within MPMX19_01820 at 1902.932 kb on - strand, within MPMX19_01820 at 1902.932 kb on - strand, within MPMX19_01820 at 1902.932 kb on - strand, within MPMX19_01820 at 1902.932 kb on - strand, within MPMX19_01820 at 1902.932 kb on - strand, within MPMX19_01820 at 1902.932 kb on - strand, within MPMX19_01820
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 1,901,105 + -1.3 1,901,105 + +0.5 1,901,375 + -1.0 1,901,471 + +0.1 1,901,511 + +0.4 1,901,511 + -0.4 1,901,561 + -1.1 1,901,561 + -1.3 1,901,562 - +1.1 1,901,562 - -0.5 1,901,565 + -1.0 1,901,565 + -1.2 1,901,565 + -0.3 1,901,636 + -0.4 1,901,636 + +0.1 1,901,636 + +0.1 1,901,636 + -0.3 1,901,636 + +0.4 1,901,636 + -0.6 1,901,636 + -1.1 1,901,636 + +0.6 1,901,636 + +0.1 1,901,636 + +0.0 1,901,636 + +0.4 1,901,636 + +1.7 1,901,636 + -0.1 1,901,636 + +0.5 1,901,636 + -1.6 1,901,637 - +0.9 1,901,637 - +1.4 1,901,637 - -1.1 1,901,637 - +0.8 1,901,637 - -0.2 1,901,637 - -0.9 1,901,637 - -1.8 1,901,637 - +0.0 1,901,637 - -1.2 1,901,637 - +0.7 1,901,637 - -0.9 1,901,637 - -0.8 1,901,637 - -0.6 1,901,637 - -0.6 1,901,637 - -2.1 1,901,637 - +1.2 1,901,637 - -1.6 1,901,711 + +0.1 1,901,711 + -1.5 1,901,711 + -0.6 1,901,711 + -0.3 1,901,712 - -0.3 1,901,712 - +1.5 1,901,726 + +0.1 1,901,727 - +1.0 1,901,840 + MPMX19_01818 0.31 -0.4 1,901,840 + MPMX19_01818 0.31 -0.9 1,901,840 + MPMX19_01818 0.31 -0.3 1,901,840 + MPMX19_01818 0.31 +0.5 1,901,840 + MPMX19_01818 0.31 +0.1 1,901,840 + MPMX19_01818 0.31 -0.5 1,901,840 + MPMX19_01818 0.31 +0.4 1,901,840 + MPMX19_01818 0.31 -1.1 1,901,840 + MPMX19_01818 0.31 +0.2 1,901,840 + MPMX19_01818 0.31 -1.3 1,901,840 + MPMX19_01818 0.31 -1.1 1,901,840 + MPMX19_01818 0.31 +0.6 1,901,840 + MPMX19_01818 0.31 -0.6 1,901,840 + MPMX19_01818 0.31 -0.6 1,901,840 + MPMX19_01818 0.31 -0.9 1,901,840 + MPMX19_01818 0.31 -0.5 1,901,840 + MPMX19_01818 0.31 -1.3 1,901,840 + MPMX19_01818 0.31 +1.7 1,901,841 - MPMX19_01818 0.32 +0.7 1,901,841 - MPMX19_01818 0.32 -0.6 1,901,841 - MPMX19_01818 0.32 -0.4 1,901,841 - MPMX19_01818 0.32 -1.5 1,901,841 - MPMX19_01818 0.32 +0.9 1,901,841 - MPMX19_01818 0.32 -0.3 1,901,841 - MPMX19_01818 0.32 +1.7 1,901,841 - MPMX19_01818 0.32 -1.2 1,901,841 - MPMX19_01818 0.32 +0.7 1,901,841 - MPMX19_01818 0.32 -0.9 1,901,841 - MPMX19_01818 0.32 +1.0 1,901,841 - MPMX19_01818 0.32 -1.3 1,901,841 - MPMX19_01818 0.32 +0.2 1,901,841 - MPMX19_01818 0.32 -2.0 1,901,841 - MPMX19_01818 0.32 -1.3 1,901,841 - MPMX19_01818 0.32 +0.1 1,901,841 - MPMX19_01818 0.32 -1.1 1,901,841 - MPMX19_01818 0.32 -1.2 1,902,025 + MPMX19_01818 0.72 +0.5 1,902,025 + MPMX19_01818 0.72 -0.6 1,902,025 + MPMX19_01818 0.72 -0.5 1,902,025 + MPMX19_01818 0.72 -0.6 1,902,026 - MPMX19_01818 0.73 -1.3 1,902,026 - MPMX19_01818 0.73 +0.3 1,902,026 - MPMX19_01818 0.73 -0.5 1,902,026 - MPMX19_01818 0.73 +2.9 1,902,026 - MPMX19_01818 0.73 -0.9 1,902,147 - -0.4 1,902,147 - -1.2 1,902,233 + +0.4 1,902,233 + -0.0 1,902,233 + -0.6 1,902,233 + -1.7 1,902,234 - -2.8 1,902,420 + MPMX19_01819 0.37 -1.2 1,902,420 + MPMX19_01819 0.37 +1.2 1,902,420 + MPMX19_01819 0.37 +0.3 1,902,420 + MPMX19_01819 0.37 -3.1 1,902,421 - MPMX19_01819 0.38 +0.3 1,902,421 - MPMX19_01819 0.38 +1.2 1,902,421 - MPMX19_01819 0.38 -1.0 1,902,421 - MPMX19_01819 0.38 -0.3 1,902,421 - MPMX19_01819 0.38 -0.6 1,902,421 - MPMX19_01819 0.38 -0.8 1,902,486 + MPMX19_01819 0.54 +0.5 1,902,486 + MPMX19_01819 0.54 -0.9 1,902,487 - MPMX19_01819 0.54 +0.1 1,902,487 - MPMX19_01819 0.54 -0.8 1,902,487 - MPMX19_01819 0.54 +0.9 1,902,487 - MPMX19_01819 0.54 +0.0 1,902,694 + -1.1 1,902,694 + -1.3 1,902,694 + -2.2 1,902,694 + +0.4 1,902,694 + -0.6 1,902,694 + +0.1 1,902,694 + +0.2 1,902,694 + -0.3 1,902,694 + +1.1 1,902,694 + +0.5 1,902,694 + -0.8 1,902,694 + -0.7 1,902,694 + +0.4 1,902,694 + +0.1 1,902,694 + -1.3 1,902,694 + +0.5 1,902,694 + +0.6 1,902,694 + -0.2 1,902,694 + -0.5 1,902,694 + +2.0 1,902,694 + +0.3 1,902,694 + -1.0 1,902,694 + +1.3 1,902,694 + -1.1 1,902,694 + -0.4 1,902,694 + -0.9 1,902,695 - +1.3 1,902,695 - +0.2 1,902,695 - -0.8 1,902,695 - -1.0 1,902,695 - +0.6 1,902,695 - +0.3 1,902,695 - -0.2 1,902,695 - +0.2 1,902,695 - +1.0 1,902,695 - -0.4 1,902,695 - -1.4 1,902,695 - -1.0 1,902,695 - -2.2 1,902,695 - -0.3 1,902,695 - -1.4 1,902,695 - +0.5 1,902,695 - -1.6 1,902,695 - -0.9 1,902,742 + MPMX19_01820 0.11 +0.5 1,902,742 + MPMX19_01820 0.11 -2.4 1,902,743 - MPMX19_01820 0.11 +0.3 1,902,743 - MPMX19_01820 0.11 -0.5 1,902,803 + MPMX19_01820 0.19 -0.6 1,902,803 + MPMX19_01820 0.19 -0.5 1,902,804 - MPMX19_01820 0.19 -0.2 1,902,804 - MPMX19_01820 0.19 +2.6 1,902,804 - MPMX19_01820 0.19 -0.8 1,902,804 - MPMX19_01820 0.19 -0.2 1,902,804 - MPMX19_01820 0.19 -0.5 1,902,862 + MPMX19_01820 0.27 -0.6 1,902,862 + MPMX19_01820 0.27 -1.6 1,902,862 + MPMX19_01820 0.27 +0.2 1,902,862 + MPMX19_01820 0.27 -2.1 1,902,862 + MPMX19_01820 0.27 -1.3 1,902,862 + MPMX19_01820 0.27 -0.4 1,902,862 + MPMX19_01820 0.27 -1.6 1,902,862 + MPMX19_01820 0.27 -0.0 1,902,862 + MPMX19_01820 0.27 -0.1 1,902,862 + MPMX19_01820 0.27 +0.3 1,902,863 - MPMX19_01820 0.28 -0.7 1,902,863 - MPMX19_01820 0.28 +0.1 1,902,863 - MPMX19_01820 0.28 +0.7 1,902,863 - MPMX19_01820 0.28 -0.8 1,902,863 - MPMX19_01820 0.28 -2.2 1,902,863 - MPMX19_01820 0.28 -0.9 1,902,863 - MPMX19_01820 0.28 +0.8 1,902,863 - MPMX19_01820 0.28 -1.2 1,902,863 - MPMX19_01820 0.28 +1.4 1,902,863 - MPMX19_01820 0.28 +0.4 1,902,863 - MPMX19_01820 0.28 +1.0 1,902,863 - MPMX19_01820 0.28 +1.0 1,902,863 - MPMX19_01820 0.28 -1.9 1,902,863 - MPMX19_01820 0.28 -0.9 1,902,863 - MPMX19_01820 0.28 -0.9 1,902,863 - MPMX19_01820 0.28 -0.1 1,902,931 + MPMX19_01820 0.37 -0.7 1,902,931 + MPMX19_01820 0.37 -0.6 1,902,931 + MPMX19_01820 0.37 -1.3 1,902,931 + MPMX19_01820 0.37 +0.9 1,902,931 + MPMX19_01820 0.37 -0.5 1,902,931 + MPMX19_01820 0.37 -0.8 1,902,931 + MPMX19_01820 0.37 +0.1 1,902,931 + MPMX19_01820 0.37 +0.7 1,902,931 + MPMX19_01820 0.37 -1.6 1,902,931 + MPMX19_01820 0.37 -1.9 1,902,932 - MPMX19_01820 0.37 +0.3 1,902,932 - MPMX19_01820 0.37 -0.4 1,902,932 - MPMX19_01820 0.37 -0.8 1,902,932 - MPMX19_01820 0.37 +0.4 1,902,932 - MPMX19_01820 0.37 +1.1 1,902,932 - MPMX19_01820 0.37 +0.5 1,902,932 - MPMX19_01820 0.37 -0.8 1,902,932 - MPMX19_01820 0.37 -0.6 1,902,932 - MPMX19_01820 0.37 +0.4 1,902,932 - MPMX19_01820 0.37 +0.5 1,902,932 - MPMX19_01820 0.37 +1.3 1,902,932 - MPMX19_01820 0.37 +1.1
Or see this region's nucleotide sequence