Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00834

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00833 and MPMX19_00834 are separated by 192 nucleotidesMPMX19_00834 and MPMX19_00835 overlap by 4 nucleotides MPMX19_00833: MPMX19_00833 - Lipopolysaccharide export system permease protein LptG, at 864,627 to 865,721 _00833 MPMX19_00834: MPMX19_00834 - Chaperone SurA, at 865,914 to 867,374 _00834 MPMX19_00835: MPMX19_00835 - D-erythronate 4-phosphate dehydrogenase, at 867,371 to 868,399 _00835 Position (kb) 865 866 867 868Strain fitness (log2 ratio) -2 -1 0 1at 865.791 kb on + strandat 865.807 kb on - strandat 865.807 kb on - strandat 865.825 kb on + strandat 865.825 kb on + strandat 865.825 kb on + strandat 865.826 kb on - strandat 865.826 kb on - strandat 865.878 kb on + strandat 865.878 kb on + strandat 865.878 kb on + strandat 865.878 kb on + strandat 865.878 kb on + strandat 865.878 kb on + strandat 865.878 kb on + strandat 865.881 kb on + strandat 867.770 kb on + strand, within MPMX19_00835at 867.770 kb on + strand, within MPMX19_00835at 867.770 kb on + strand, within MPMX19_00835at 867.770 kb on + strand, within MPMX19_00835at 867.770 kb on + strand, within MPMX19_00835at 867.770 kb on + strand, within MPMX19_00835at 867.770 kb on + strand, within MPMX19_00835at 867.771 kb on - strand, within MPMX19_00835at 867.771 kb on - strand, within MPMX19_00835at 867.771 kb on - strand, within MPMX19_00835at 867.771 kb on - strand, within MPMX19_00835at 867.771 kb on - strand, within MPMX19_00835at 867.771 kb on - strand, within MPMX19_00835at 867.771 kb on - strand, within MPMX19_00835at 867.771 kb on - strand, within MPMX19_00835at 867.771 kb on - strand, within MPMX19_00835at 867.806 kb on + strand, within MPMX19_00835at 867.807 kb on - strand, within MPMX19_00835at 867.807 kb on - strand, within MPMX19_00835at 867.807 kb on - strand, within MPMX19_00835at 868.166 kb on + strand, within MPMX19_00835at 868.167 kb on - strand, within MPMX19_00835at 868.167 kb on - strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.187 kb on + strand, within MPMX19_00835at 868.188 kb on - strand, within MPMX19_00835at 868.188 kb on - strand, within MPMX19_00835at 868.188 kb on - strand, within MPMX19_00835at 868.188 kb on - strand, within MPMX19_00835at 868.188 kb on - strand, within MPMX19_00835at 868.188 kb on - strand, within MPMX19_00835at 868.188 kb on - strand, within MPMX19_00835at 868.188 kb on - strand, within MPMX19_00835at 868.188 kb on - strand, within MPMX19_00835at 868.188 kb on - strand, within MPMX19_00835

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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865,791 + -0.2
865,807 - +0.5
865,807 - -0.4
865,825 + -1.4
865,825 + +0.3
865,825 + -0.4
865,826 - +0.3
865,826 - +0.1
865,878 + +1.2
865,878 + -0.8
865,878 + -1.9
865,878 + +0.2
865,878 + +1.3
865,878 + -1.4
865,878 + -0.7
865,881 + +0.3
867,770 + MPMX19_00835 0.39 -1.3
867,770 + MPMX19_00835 0.39 -0.1
867,770 + MPMX19_00835 0.39 -1.7
867,770 + MPMX19_00835 0.39 +0.5
867,770 + MPMX19_00835 0.39 -2.3
867,770 + MPMX19_00835 0.39 -0.1
867,770 + MPMX19_00835 0.39 -0.4
867,771 - MPMX19_00835 0.39 -2.5
867,771 - MPMX19_00835 0.39 -2.5
867,771 - MPMX19_00835 0.39 -0.8
867,771 - MPMX19_00835 0.39 +1.0
867,771 - MPMX19_00835 0.39 -0.2
867,771 - MPMX19_00835 0.39 -2.0
867,771 - MPMX19_00835 0.39 -1.2
867,771 - MPMX19_00835 0.39 -1.0
867,771 - MPMX19_00835 0.39 -2.0
867,806 + MPMX19_00835 0.42 -1.7
867,807 - MPMX19_00835 0.42 -0.7
867,807 - MPMX19_00835 0.42 +1.1
867,807 - MPMX19_00835 0.42 +1.1
868,166 + MPMX19_00835 0.77 -1.7
868,167 - MPMX19_00835 0.77 -1.5
868,167 - MPMX19_00835 0.77 -0.5
868,187 + MPMX19_00835 0.79 +0.3
868,187 + MPMX19_00835 0.79 -1.6
868,187 + MPMX19_00835 0.79 -0.7
868,187 + MPMX19_00835 0.79 +0.8
868,187 + MPMX19_00835 0.79 -0.3
868,187 + MPMX19_00835 0.79 +0.0
868,187 + MPMX19_00835 0.79 +0.2
868,187 + MPMX19_00835 0.79 -0.8
868,187 + MPMX19_00835 0.79 -1.5
868,187 + MPMX19_00835 0.79 +0.6
868,187 + MPMX19_00835 0.79 -0.5
868,187 + MPMX19_00835 0.79 -0.7
868,187 + MPMX19_00835 0.79 -0.7
868,187 + MPMX19_00835 0.79 -0.1
868,187 + MPMX19_00835 0.79 -1.9
868,187 + MPMX19_00835 0.79 -1.8
868,187 + MPMX19_00835 0.79 -0.3
868,187 + MPMX19_00835 0.79 -1.4
868,188 - MPMX19_00835 0.79 -1.1
868,188 - MPMX19_00835 0.79 -1.0
868,188 - MPMX19_00835 0.79 -0.1
868,188 - MPMX19_00835 0.79 +0.5
868,188 - MPMX19_00835 0.79 -1.2
868,188 - MPMX19_00835 0.79 +0.2
868,188 - MPMX19_00835 0.79 +0.9
868,188 - MPMX19_00835 0.79 -1.0
868,188 - MPMX19_00835 0.79 +0.5
868,188 - MPMX19_00835 0.79 -0.4

Or see this region's nucleotide sequence