Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00807 and MPMX19_00808 are separated by 275 nucleotides MPMX19_00808 and MPMX19_00809 are separated by 314 nucleotides MPMX19_00809 and MPMX19_00810 are separated by 18 nucleotides MPMX19_00810 and MPMX19_00811 are separated by 130 nucleotides MPMX19_00811 and MPMX19_00812 are separated by 174 nucleotides
MPMX19_00807: MPMX19_00807 - Fumonisin B1 esterase, at 830,024 to 831,952
_00807
MPMX19_00808: MPMX19_00808 - hypothetical protein, at 832,228 to 832,440
_00808
MPMX19_00809: MPMX19_00809 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 832,755 to 833,966
_00809
MPMX19_00810: MPMX19_00810 - hypothetical protein, at 833,985 to 834,302
_00810
MPMX19_00811: MPMX19_00811 - Divalent-cation tolerance protein CutA, at 834,433 to 834,777
_00811
MPMX19_00812: MPMX19_00812 - Molybdopterin molybdenumtransferase, at 834,952 to 836,190
_00812
Position (kb) 832
833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 831.934 kb on + strand at 831.988 kb on + strand at 832.027 kb on + strand at 832.191 kb on - strand at 832.191 kb on - strand at 832.191 kb on - strand at 832.200 kb on + strand at 832.200 kb on + strand at 832.200 kb on + strand at 832.201 kb on - strand at 832.201 kb on - strand at 832.201 kb on - strand at 832.201 kb on - strand at 832.201 kb on - strand at 832.201 kb on - strand at 832.201 kb on - strand at 832.201 kb on - strand at 832.201 kb on - strand at 832.201 kb on - strand at 832.234 kb on + strand at 832.235 kb on - strand at 832.235 kb on - strand at 832.416 kb on + strand, within MPMX19_00808 at 832.416 kb on + strand, within MPMX19_00808 at 832.417 kb on - strand, within MPMX19_00808 at 832.570 kb on + strand at 832.570 kb on + strand at 832.570 kb on + strand at 832.570 kb on + strand at 832.570 kb on + strand at 832.571 kb on - strand at 832.571 kb on - strand at 832.571 kb on - strand at 832.571 kb on - strand at 832.583 kb on + strand at 832.619 kb on + strand at 832.619 kb on + strand at 832.619 kb on + strand at 832.619 kb on + strand at 832.619 kb on + strand at 832.619 kb on + strand at 832.619 kb on + strand at 832.619 kb on + strand at 832.620 kb on - strand at 832.620 kb on - strand at 832.620 kb on - strand at 832.620 kb on - strand at 832.620 kb on - strand at 832.620 kb on - strand at 832.620 kb on - strand at 832.620 kb on - strand at 832.620 kb on - strand at 832.620 kb on - strand at 832.653 kb on + strand at 832.653 kb on + strand at 832.653 kb on + strand at 832.654 kb on - strand at 832.654 kb on - strand at 832.669 kb on + strand at 832.669 kb on + strand at 832.669 kb on + strand at 832.669 kb on + strand at 832.670 kb on - strand at 832.675 kb on + strand at 832.676 kb on - strand at 832.676 kb on - strand at 832.935 kb on - strand, within MPMX19_00809 at 832.935 kb on - strand, within MPMX19_00809 at 833.094 kb on + strand, within MPMX19_00809 at 833.094 kb on + strand, within MPMX19_00809 at 833.094 kb on + strand, within MPMX19_00809 at 833.094 kb on + strand, within MPMX19_00809 at 833.217 kb on + strand, within MPMX19_00809 at 833.217 kb on + strand, within MPMX19_00809 at 833.217 kb on + strand, within MPMX19_00809 at 833.218 kb on - strand, within MPMX19_00809 at 833.218 kb on - strand, within MPMX19_00809 at 833.218 kb on - strand, within MPMX19_00809 at 833.218 kb on - strand, within MPMX19_00809 at 833.218 kb on - strand, within MPMX19_00809 at 833.218 kb on - strand, within MPMX19_00809 at 833.727 kb on + strand, within MPMX19_00809 at 833.784 kb on + strand, within MPMX19_00809 at 833.784 kb on + strand, within MPMX19_00809 at 833.785 kb on - strand, within MPMX19_00809 at 833.785 kb on - strand, within MPMX19_00809 at 833.785 kb on - strand, within MPMX19_00809 at 833.964 kb on + strand at 833.964 kb on + strand at 833.964 kb on + strand at 833.964 kb on + strand at 833.964 kb on + strand at 833.964 kb on + strand at 833.964 kb on + strand at 833.965 kb on - strand at 833.965 kb on - strand at 833.986 kb on + strand at 833.986 kb on + strand at 833.987 kb on - strand at 833.987 kb on - strand at 833.987 kb on - strand at 833.987 kb on - strand at 833.987 kb on - strand at 833.987 kb on - strand at 834.385 kb on + strand at 834.385 kb on + strand at 834.385 kb on + strand at 834.386 kb on - strand at 834.386 kb on - strand at 834.386 kb on - strand at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.481 kb on + strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.482 kb on - strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.483 kb on + strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.484 kb on - strand, within MPMX19_00811 at 834.586 kb on + strand, within MPMX19_00811 at 834.586 kb on + strand, within MPMX19_00811 at 834.586 kb on + strand, within MPMX19_00811 at 834.587 kb on - strand, within MPMX19_00811 at 834.587 kb on - strand, within MPMX19_00811 at 834.587 kb on - strand, within MPMX19_00811 at 834.587 kb on - strand, within MPMX19_00811 at 834.587 kb on - strand, within MPMX19_00811 at 834.695 kb on - strand, within MPMX19_00811 at 834.695 kb on - strand, within MPMX19_00811 at 834.695 kb on - strand, within MPMX19_00811 at 834.695 kb on - strand, within MPMX19_00811 at 834.695 kb on - strand, within MPMX19_00811 at 834.745 kb on + strand at 834.745 kb on + strand at 834.746 kb on - strand at 834.788 kb on + strand at 834.788 kb on + strand at 834.788 kb on + strand at 834.789 kb on - strand at 834.789 kb on - strand at 834.789 kb on - strand at 834.789 kb on - strand at 834.789 kb on - strand at 834.789 kb on - strand at 834.789 kb on - strand at 834.796 kb on + strand at 834.796 kb on + strand at 834.796 kb on + strand at 834.797 kb on - strand at 834.797 kb on - strand at 834.797 kb on - strand at 834.848 kb on - strand at 834.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 831,934 + +0.4 831,988 + +0.4 832,027 + -1.2 832,191 - -1.2 832,191 - +0.2 832,191 - -1.2 832,200 + -0.5 832,200 + -0.3 832,200 + +0.6 832,201 - -0.5 832,201 - -0.1 832,201 - -1.1 832,201 - +0.0 832,201 - -0.8 832,201 - +0.0 832,201 - -0.2 832,201 - +0.3 832,201 - -1.5 832,201 - -0.4 832,234 + +0.3 832,235 - +0.1 832,235 - -1.5 832,416 + MPMX19_00808 0.88 -1.8 832,416 + MPMX19_00808 0.88 -0.4 832,417 - MPMX19_00808 0.89 +0.6 832,570 + +0.5 832,570 + -0.1 832,570 + -1.4 832,570 + -1.8 832,570 + -0.4 832,571 - -0.5 832,571 - +0.2 832,571 - -0.5 832,571 - +0.2 832,583 + -1.0 832,619 + -0.5 832,619 + -0.2 832,619 + +0.2 832,619 + -1.8 832,619 + +0.2 832,619 + -1.0 832,619 + -0.5 832,619 + -0.2 832,620 - -0.2 832,620 - +0.2 832,620 - +0.5 832,620 - -1.2 832,620 - -2.2 832,620 - -0.2 832,620 - -1.2 832,620 - -0.4 832,620 - -1.3 832,620 - -1.4 832,653 + +0.1 832,653 + -1.8 832,653 + -0.5 832,654 - -2.0 832,654 - -2.0 832,669 + -2.3 832,669 + +1.3 832,669 + +0.3 832,669 + +0.9 832,670 - +1.0 832,675 + +0.6 832,676 - -0.4 832,676 - -1.9 832,935 - MPMX19_00809 0.15 -0.3 832,935 - MPMX19_00809 0.15 -1.5 833,094 + MPMX19_00809 0.28 +0.5 833,094 + MPMX19_00809 0.28 -1.3 833,094 + MPMX19_00809 0.28 +1.9 833,094 + MPMX19_00809 0.28 +0.6 833,217 + MPMX19_00809 0.38 -0.4 833,217 + MPMX19_00809 0.38 +0.6 833,217 + MPMX19_00809 0.38 +0.1 833,218 - MPMX19_00809 0.38 -0.1 833,218 - MPMX19_00809 0.38 +1.2 833,218 - MPMX19_00809 0.38 -0.6 833,218 - MPMX19_00809 0.38 -2.6 833,218 - MPMX19_00809 0.38 +0.1 833,218 - MPMX19_00809 0.38 -1.5 833,727 + MPMX19_00809 0.80 +0.5 833,784 + MPMX19_00809 0.85 +0.0 833,784 + MPMX19_00809 0.85 -0.1 833,785 - MPMX19_00809 0.85 +0.2 833,785 - MPMX19_00809 0.85 +0.4 833,785 - MPMX19_00809 0.85 -0.5 833,964 + -0.3 833,964 + -1.8 833,964 + -0.0 833,964 + -1.2 833,964 + -1.4 833,964 + -0.9 833,964 + -0.1 833,965 - -1.1 833,965 - +1.1 833,986 + +0.2 833,986 + -0.9 833,987 - +0.6 833,987 - +0.0 833,987 - -0.6 833,987 - -0.6 833,987 - -0.1 833,987 - +0.5 834,385 + -2.0 834,385 + -0.1 834,385 + -0.7 834,386 - +2.0 834,386 - -0.7 834,386 - -1.3 834,481 + MPMX19_00811 0.14 +1.1 834,481 + MPMX19_00811 0.14 -0.2 834,481 + MPMX19_00811 0.14 +0.0 834,481 + MPMX19_00811 0.14 +0.4 834,481 + MPMX19_00811 0.14 -1.1 834,481 + MPMX19_00811 0.14 -1.5 834,481 + MPMX19_00811 0.14 -1.5 834,481 + MPMX19_00811 0.14 +0.2 834,481 + MPMX19_00811 0.14 -1.2 834,481 + MPMX19_00811 0.14 -1.7 834,482 - MPMX19_00811 0.14 +0.3 834,482 - MPMX19_00811 0.14 +0.2 834,482 - MPMX19_00811 0.14 -1.4 834,482 - MPMX19_00811 0.14 -0.1 834,482 - MPMX19_00811 0.14 -2.3 834,482 - MPMX19_00811 0.14 -1.5 834,482 - MPMX19_00811 0.14 +1.6 834,482 - MPMX19_00811 0.14 +0.9 834,482 - MPMX19_00811 0.14 +0.3 834,482 - MPMX19_00811 0.14 -2.2 834,482 - MPMX19_00811 0.14 +0.6 834,482 - MPMX19_00811 0.14 +0.0 834,482 - MPMX19_00811 0.14 -0.8 834,482 - MPMX19_00811 0.14 -0.4 834,482 - MPMX19_00811 0.14 -2.0 834,482 - MPMX19_00811 0.14 -1.1 834,482 - MPMX19_00811 0.14 -0.7 834,482 - MPMX19_00811 0.14 -1.4 834,483 + MPMX19_00811 0.14 -0.5 834,483 + MPMX19_00811 0.14 +0.4 834,483 + MPMX19_00811 0.14 -0.4 834,483 + MPMX19_00811 0.14 -0.2 834,483 + MPMX19_00811 0.14 +0.4 834,483 + MPMX19_00811 0.14 +0.8 834,483 + MPMX19_00811 0.14 +0.6 834,484 - MPMX19_00811 0.15 -0.3 834,484 - MPMX19_00811 0.15 -0.7 834,484 - MPMX19_00811 0.15 +0.2 834,484 - MPMX19_00811 0.15 +0.2 834,484 - MPMX19_00811 0.15 -0.5 834,484 - MPMX19_00811 0.15 -0.3 834,484 - MPMX19_00811 0.15 -0.2 834,484 - MPMX19_00811 0.15 +0.1 834,484 - MPMX19_00811 0.15 +0.5 834,484 - MPMX19_00811 0.15 -1.5 834,484 - MPMX19_00811 0.15 -0.8 834,484 - MPMX19_00811 0.15 +1.2 834,484 - MPMX19_00811 0.15 +0.8 834,484 - MPMX19_00811 0.15 -0.6 834,484 - MPMX19_00811 0.15 -1.2 834,484 - MPMX19_00811 0.15 -0.1 834,586 + MPMX19_00811 0.44 +0.4 834,586 + MPMX19_00811 0.44 -1.2 834,586 + MPMX19_00811 0.44 -1.2 834,587 - MPMX19_00811 0.45 -0.3 834,587 - MPMX19_00811 0.45 -1.1 834,587 - MPMX19_00811 0.45 +0.5 834,587 - MPMX19_00811 0.45 +0.7 834,587 - MPMX19_00811 0.45 +0.3 834,695 - MPMX19_00811 0.76 -0.4 834,695 - MPMX19_00811 0.76 -0.5 834,695 - MPMX19_00811 0.76 -1.1 834,695 - MPMX19_00811 0.76 +0.3 834,695 - MPMX19_00811 0.76 -1.5 834,745 + +0.6 834,745 + -2.8 834,746 - -2.5 834,788 + -0.3 834,788 + +1.2 834,788 + -0.7 834,789 - -0.7 834,789 - +0.9 834,789 - +1.4 834,789 - -1.5 834,789 - +1.1 834,789 - -0.5 834,789 - +0.6 834,796 + +0.2 834,796 + -0.6 834,796 + +0.0 834,797 - -0.1 834,797 - -0.4 834,797 - +0.4 834,848 - -2.2 834,848 - -0.3
Or see this region's nucleotide sequence