Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00809

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00807 and MPMX19_00808 are separated by 275 nucleotidesMPMX19_00808 and MPMX19_00809 are separated by 314 nucleotidesMPMX19_00809 and MPMX19_00810 are separated by 18 nucleotidesMPMX19_00810 and MPMX19_00811 are separated by 130 nucleotidesMPMX19_00811 and MPMX19_00812 are separated by 174 nucleotides MPMX19_00807: MPMX19_00807 - Fumonisin B1 esterase, at 830,024 to 831,952 _00807 MPMX19_00808: MPMX19_00808 - hypothetical protein, at 832,228 to 832,440 _00808 MPMX19_00809: MPMX19_00809 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 832,755 to 833,966 _00809 MPMX19_00810: MPMX19_00810 - hypothetical protein, at 833,985 to 834,302 _00810 MPMX19_00811: MPMX19_00811 - Divalent-cation tolerance protein CutA, at 834,433 to 834,777 _00811 MPMX19_00812: MPMX19_00812 - Molybdopterin molybdenumtransferase, at 834,952 to 836,190 _00812 Position (kb) 832 833 834Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 831.934 kb on + strandat 831.988 kb on + strandat 832.027 kb on + strandat 832.191 kb on - strandat 832.191 kb on - strandat 832.191 kb on - strandat 832.200 kb on + strandat 832.200 kb on + strandat 832.200 kb on + strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.201 kb on - strandat 832.234 kb on + strandat 832.235 kb on - strandat 832.235 kb on - strandat 832.416 kb on + strand, within MPMX19_00808at 832.416 kb on + strand, within MPMX19_00808at 832.417 kb on - strand, within MPMX19_00808at 832.570 kb on + strandat 832.570 kb on + strandat 832.570 kb on + strandat 832.570 kb on + strandat 832.570 kb on + strandat 832.571 kb on - strandat 832.571 kb on - strandat 832.571 kb on - strandat 832.571 kb on - strandat 832.583 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.619 kb on + strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.620 kb on - strandat 832.653 kb on + strandat 832.653 kb on + strandat 832.653 kb on + strandat 832.654 kb on - strandat 832.654 kb on - strandat 832.669 kb on + strandat 832.669 kb on + strandat 832.669 kb on + strandat 832.669 kb on + strandat 832.670 kb on - strandat 832.675 kb on + strandat 832.676 kb on - strandat 832.676 kb on - strandat 832.935 kb on - strand, within MPMX19_00809at 832.935 kb on - strand, within MPMX19_00809at 833.094 kb on + strand, within MPMX19_00809at 833.094 kb on + strand, within MPMX19_00809at 833.094 kb on + strand, within MPMX19_00809at 833.094 kb on + strand, within MPMX19_00809at 833.217 kb on + strand, within MPMX19_00809at 833.217 kb on + strand, within MPMX19_00809at 833.217 kb on + strand, within MPMX19_00809at 833.218 kb on - strand, within MPMX19_00809at 833.218 kb on - strand, within MPMX19_00809at 833.218 kb on - strand, within MPMX19_00809at 833.218 kb on - strand, within MPMX19_00809at 833.218 kb on - strand, within MPMX19_00809at 833.218 kb on - strand, within MPMX19_00809at 833.727 kb on + strand, within MPMX19_00809at 833.784 kb on + strand, within MPMX19_00809at 833.784 kb on + strand, within MPMX19_00809at 833.785 kb on - strand, within MPMX19_00809at 833.785 kb on - strand, within MPMX19_00809at 833.785 kb on - strand, within MPMX19_00809at 833.964 kb on + strandat 833.964 kb on + strandat 833.964 kb on + strandat 833.964 kb on + strandat 833.964 kb on + strandat 833.964 kb on + strandat 833.964 kb on + strandat 833.965 kb on - strandat 833.965 kb on - strandat 833.986 kb on + strandat 833.986 kb on + strandat 833.987 kb on - strandat 833.987 kb on - strandat 833.987 kb on - strandat 833.987 kb on - strandat 833.987 kb on - strandat 833.987 kb on - strandat 834.385 kb on + strandat 834.385 kb on + strandat 834.385 kb on + strandat 834.386 kb on - strandat 834.386 kb on - strandat 834.386 kb on - strandat 834.481 kb on + strand, within MPMX19_00811at 834.481 kb on + strand, within MPMX19_00811at 834.481 kb on + strand, within MPMX19_00811at 834.481 kb on + strand, within MPMX19_00811at 834.481 kb on + strand, within MPMX19_00811at 834.481 kb on + strand, within MPMX19_00811at 834.481 kb on + strand, within MPMX19_00811at 834.481 kb on + strand, within MPMX19_00811at 834.481 kb on + strand, within MPMX19_00811at 834.481 kb on + strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.482 kb on - strand, within MPMX19_00811at 834.483 kb on + strand, within MPMX19_00811at 834.483 kb on + strand, within MPMX19_00811at 834.483 kb on + strand, within MPMX19_00811at 834.483 kb on + strand, within MPMX19_00811at 834.483 kb on + strand, within MPMX19_00811at 834.483 kb on + strand, within MPMX19_00811at 834.483 kb on + strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.484 kb on - strand, within MPMX19_00811at 834.586 kb on + strand, within MPMX19_00811at 834.586 kb on + strand, within MPMX19_00811at 834.586 kb on + strand, within MPMX19_00811at 834.587 kb on - strand, within MPMX19_00811at 834.587 kb on - strand, within MPMX19_00811at 834.587 kb on - strand, within MPMX19_00811at 834.587 kb on - strand, within MPMX19_00811at 834.587 kb on - strand, within MPMX19_00811at 834.695 kb on - strand, within MPMX19_00811at 834.695 kb on - strand, within MPMX19_00811at 834.695 kb on - strand, within MPMX19_00811at 834.695 kb on - strand, within MPMX19_00811at 834.695 kb on - strand, within MPMX19_00811at 834.745 kb on + strandat 834.745 kb on + strandat 834.746 kb on - strandat 834.788 kb on + strandat 834.788 kb on + strandat 834.788 kb on + strandat 834.789 kb on - strandat 834.789 kb on - strandat 834.789 kb on - strandat 834.789 kb on - strandat 834.789 kb on - strandat 834.789 kb on - strandat 834.789 kb on - strandat 834.796 kb on + strandat 834.796 kb on + strandat 834.796 kb on + strandat 834.797 kb on - strandat 834.797 kb on - strandat 834.797 kb on - strandat 834.848 kb on - strandat 834.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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831,934 + +0.4
831,988 + +0.4
832,027 + -1.2
832,191 - -1.2
832,191 - +0.2
832,191 - -1.2
832,200 + -0.5
832,200 + -0.3
832,200 + +0.6
832,201 - -0.5
832,201 - -0.1
832,201 - -1.1
832,201 - +0.0
832,201 - -0.8
832,201 - +0.0
832,201 - -0.2
832,201 - +0.3
832,201 - -1.5
832,201 - -0.4
832,234 + +0.3
832,235 - +0.1
832,235 - -1.5
832,416 + MPMX19_00808 0.88 -1.8
832,416 + MPMX19_00808 0.88 -0.4
832,417 - MPMX19_00808 0.89 +0.6
832,570 + +0.5
832,570 + -0.1
832,570 + -1.4
832,570 + -1.8
832,570 + -0.4
832,571 - -0.5
832,571 - +0.2
832,571 - -0.5
832,571 - +0.2
832,583 + -1.0
832,619 + -0.5
832,619 + -0.2
832,619 + +0.2
832,619 + -1.8
832,619 + +0.2
832,619 + -1.0
832,619 + -0.5
832,619 + -0.2
832,620 - -0.2
832,620 - +0.2
832,620 - +0.5
832,620 - -1.2
832,620 - -2.2
832,620 - -0.2
832,620 - -1.2
832,620 - -0.4
832,620 - -1.3
832,620 - -1.4
832,653 + +0.1
832,653 + -1.8
832,653 + -0.5
832,654 - -2.0
832,654 - -2.0
832,669 + -2.3
832,669 + +1.3
832,669 + +0.3
832,669 + +0.9
832,670 - +1.0
832,675 + +0.6
832,676 - -0.4
832,676 - -1.9
832,935 - MPMX19_00809 0.15 -0.3
832,935 - MPMX19_00809 0.15 -1.5
833,094 + MPMX19_00809 0.28 +0.5
833,094 + MPMX19_00809 0.28 -1.3
833,094 + MPMX19_00809 0.28 +1.9
833,094 + MPMX19_00809 0.28 +0.6
833,217 + MPMX19_00809 0.38 -0.4
833,217 + MPMX19_00809 0.38 +0.6
833,217 + MPMX19_00809 0.38 +0.1
833,218 - MPMX19_00809 0.38 -0.1
833,218 - MPMX19_00809 0.38 +1.2
833,218 - MPMX19_00809 0.38 -0.6
833,218 - MPMX19_00809 0.38 -2.6
833,218 - MPMX19_00809 0.38 +0.1
833,218 - MPMX19_00809 0.38 -1.5
833,727 + MPMX19_00809 0.80 +0.5
833,784 + MPMX19_00809 0.85 +0.0
833,784 + MPMX19_00809 0.85 -0.1
833,785 - MPMX19_00809 0.85 +0.2
833,785 - MPMX19_00809 0.85 +0.4
833,785 - MPMX19_00809 0.85 -0.5
833,964 + -0.3
833,964 + -1.8
833,964 + -0.0
833,964 + -1.2
833,964 + -1.4
833,964 + -0.9
833,964 + -0.1
833,965 - -1.1
833,965 - +1.1
833,986 + +0.2
833,986 + -0.9
833,987 - +0.6
833,987 - +0.0
833,987 - -0.6
833,987 - -0.6
833,987 - -0.1
833,987 - +0.5
834,385 + -2.0
834,385 + -0.1
834,385 + -0.7
834,386 - +2.0
834,386 - -0.7
834,386 - -1.3
834,481 + MPMX19_00811 0.14 +1.1
834,481 + MPMX19_00811 0.14 -0.2
834,481 + MPMX19_00811 0.14 +0.0
834,481 + MPMX19_00811 0.14 +0.4
834,481 + MPMX19_00811 0.14 -1.1
834,481 + MPMX19_00811 0.14 -1.5
834,481 + MPMX19_00811 0.14 -1.5
834,481 + MPMX19_00811 0.14 +0.2
834,481 + MPMX19_00811 0.14 -1.2
834,481 + MPMX19_00811 0.14 -1.7
834,482 - MPMX19_00811 0.14 +0.3
834,482 - MPMX19_00811 0.14 +0.2
834,482 - MPMX19_00811 0.14 -1.4
834,482 - MPMX19_00811 0.14 -0.1
834,482 - MPMX19_00811 0.14 -2.3
834,482 - MPMX19_00811 0.14 -1.5
834,482 - MPMX19_00811 0.14 +1.6
834,482 - MPMX19_00811 0.14 +0.9
834,482 - MPMX19_00811 0.14 +0.3
834,482 - MPMX19_00811 0.14 -2.2
834,482 - MPMX19_00811 0.14 +0.6
834,482 - MPMX19_00811 0.14 +0.0
834,482 - MPMX19_00811 0.14 -0.8
834,482 - MPMX19_00811 0.14 -0.4
834,482 - MPMX19_00811 0.14 -2.0
834,482 - MPMX19_00811 0.14 -1.1
834,482 - MPMX19_00811 0.14 -0.7
834,482 - MPMX19_00811 0.14 -1.4
834,483 + MPMX19_00811 0.14 -0.5
834,483 + MPMX19_00811 0.14 +0.4
834,483 + MPMX19_00811 0.14 -0.4
834,483 + MPMX19_00811 0.14 -0.2
834,483 + MPMX19_00811 0.14 +0.4
834,483 + MPMX19_00811 0.14 +0.8
834,483 + MPMX19_00811 0.14 +0.6
834,484 - MPMX19_00811 0.15 -0.3
834,484 - MPMX19_00811 0.15 -0.7
834,484 - MPMX19_00811 0.15 +0.2
834,484 - MPMX19_00811 0.15 +0.2
834,484 - MPMX19_00811 0.15 -0.5
834,484 - MPMX19_00811 0.15 -0.3
834,484 - MPMX19_00811 0.15 -0.2
834,484 - MPMX19_00811 0.15 +0.1
834,484 - MPMX19_00811 0.15 +0.5
834,484 - MPMX19_00811 0.15 -1.5
834,484 - MPMX19_00811 0.15 -0.8
834,484 - MPMX19_00811 0.15 +1.2
834,484 - MPMX19_00811 0.15 +0.8
834,484 - MPMX19_00811 0.15 -0.6
834,484 - MPMX19_00811 0.15 -1.2
834,484 - MPMX19_00811 0.15 -0.1
834,586 + MPMX19_00811 0.44 +0.4
834,586 + MPMX19_00811 0.44 -1.2
834,586 + MPMX19_00811 0.44 -1.2
834,587 - MPMX19_00811 0.45 -0.3
834,587 - MPMX19_00811 0.45 -1.1
834,587 - MPMX19_00811 0.45 +0.5
834,587 - MPMX19_00811 0.45 +0.7
834,587 - MPMX19_00811 0.45 +0.3
834,695 - MPMX19_00811 0.76 -0.4
834,695 - MPMX19_00811 0.76 -0.5
834,695 - MPMX19_00811 0.76 -1.1
834,695 - MPMX19_00811 0.76 +0.3
834,695 - MPMX19_00811 0.76 -1.5
834,745 + +0.6
834,745 + -2.8
834,746 - -2.5
834,788 + -0.3
834,788 + +1.2
834,788 + -0.7
834,789 - -0.7
834,789 - +0.9
834,789 - +1.4
834,789 - -1.5
834,789 - +1.1
834,789 - -0.5
834,789 - +0.6
834,796 + +0.2
834,796 + -0.6
834,796 + +0.0
834,797 - -0.1
834,797 - -0.4
834,797 - +0.4
834,848 - -2.2
834,848 - -0.3

Or see this region's nucleotide sequence