Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00711 and MPMX19_00712 are separated by 51 nucleotides MPMX19_00712 and MPMX19_00713 are separated by 196 nucleotides MPMX19_00713 and MPMX19_00714 are separated by 87 nucleotides
MPMX19_00711: MPMX19_00711 - Chaperone protein DnaJ, at 734,060 to 735,037
_00711
MPMX19_00712: MPMX19_00712 - hypothetical protein, at 735,089 to 735,562
_00712
MPMX19_00713: MPMX19_00713 - Pyridoxine/pyridoxamine 5'-phosphate oxidase, at 735,759 to 736,391
_00713
MPMX19_00714: MPMX19_00714 - Ferrous-iron efflux pump FieF, at 736,479 to 737,414
_00714
Position (kb) 735
736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 734.842 kb on - strand, within MPMX19_00711 at 734.877 kb on + strand, within MPMX19_00711 at 734.877 kb on + strand, within MPMX19_00711 at 734.877 kb on + strand, within MPMX19_00711 at 734.878 kb on - strand, within MPMX19_00711 at 734.878 kb on - strand, within MPMX19_00711 at 734.878 kb on - strand, within MPMX19_00711 at 734.964 kb on + strand at 734.964 kb on + strand at 734.964 kb on + strand at 734.964 kb on + strand at 734.964 kb on + strand at 734.965 kb on - strand at 735.018 kb on + strand at 735.018 kb on + strand at 735.018 kb on + strand at 735.018 kb on + strand at 735.019 kb on - strand at 735.019 kb on - strand at 735.019 kb on - strand at 735.032 kb on - strand at 735.090 kb on + strand at 735.090 kb on + strand at 735.090 kb on + strand at 735.090 kb on + strand at 735.090 kb on + strand at 735.091 kb on - strand at 735.091 kb on - strand at 735.091 kb on - strand at 735.091 kb on - strand at 735.091 kb on - strand at 735.091 kb on - strand at 735.091 kb on - strand at 735.115 kb on + strand at 735.115 kb on + strand at 735.115 kb on + strand at 735.116 kb on - strand at 735.145 kb on - strand, within MPMX19_00712 at 735.145 kb on - strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.216 kb on + strand, within MPMX19_00712 at 735.216 kb on + strand, within MPMX19_00712 at 735.216 kb on + strand, within MPMX19_00712 at 735.300 kb on + strand, within MPMX19_00712 at 735.300 kb on + strand, within MPMX19_00712 at 735.300 kb on + strand, within MPMX19_00712 at 735.300 kb on + strand, within MPMX19_00712 at 735.300 kb on + strand, within MPMX19_00712 at 735.301 kb on - strand, within MPMX19_00712 at 735.301 kb on - strand, within MPMX19_00712 at 735.301 kb on - strand, within MPMX19_00712 at 735.301 kb on - strand, within MPMX19_00712 at 735.301 kb on - strand, within MPMX19_00712 at 735.327 kb on + strand, within MPMX19_00712 at 735.327 kb on + strand, within MPMX19_00712 at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.638 kb on + strand at 735.638 kb on + strand at 735.638 kb on + strand at 735.638 kb on + strand at 735.639 kb on - strand at 736.389 kb on + strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.430 kb on - strand at 736.430 kb on - strand at 736.430 kb on - strand at 736.430 kb on - strand at 736.443 kb on + strand at 736.443 kb on + strand at 736.540 kb on - strand at 736.540 kb on - strand at 736.540 kb on - strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 734,842 - MPMX19_00711 0.80 -0.3 734,877 + MPMX19_00711 0.84 +0.7 734,877 + MPMX19_00711 0.84 +0.5 734,877 + MPMX19_00711 0.84 -2.2 734,878 - MPMX19_00711 0.84 -1.5 734,878 - MPMX19_00711 0.84 +1.2 734,878 - MPMX19_00711 0.84 +0.5 734,964 + -0.7 734,964 + +0.1 734,964 + +0.1 734,964 + -0.3 734,964 + +0.4 734,965 - -0.3 735,018 + +0.7 735,018 + +0.4 735,018 + -1.5 735,018 + +0.3 735,019 - -0.5 735,019 - -1.5 735,019 - -0.3 735,032 - -1.7 735,090 + +1.5 735,090 + +0.1 735,090 + +0.2 735,090 + +0.1 735,090 + +0.8 735,091 - -0.6 735,091 - -0.0 735,091 - -1.5 735,091 - -0.2 735,091 - +0.8 735,091 - +2.0 735,091 - -0.0 735,115 + -0.3 735,115 + -0.8 735,115 + +0.1 735,116 - -0.5 735,145 - MPMX19_00712 0.12 +0.1 735,145 - MPMX19_00712 0.12 -0.9 735,198 + MPMX19_00712 0.23 -1.2 735,198 + MPMX19_00712 0.23 +0.2 735,198 + MPMX19_00712 0.23 -1.7 735,198 + MPMX19_00712 0.23 -0.3 735,198 + MPMX19_00712 0.23 -0.9 735,198 + MPMX19_00712 0.23 -0.7 735,198 + MPMX19_00712 0.23 -1.0 735,198 + MPMX19_00712 0.23 +0.2 735,199 - MPMX19_00712 0.23 +0.4 735,199 - MPMX19_00712 0.23 -2.3 735,199 - MPMX19_00712 0.23 -1.8 735,199 - MPMX19_00712 0.23 -0.7 735,199 - MPMX19_00712 0.23 -2.3 735,199 - MPMX19_00712 0.23 -0.2 735,199 - MPMX19_00712 0.23 -0.1 735,199 - MPMX19_00712 0.23 -2.7 735,199 - MPMX19_00712 0.23 -1.5 735,199 - MPMX19_00712 0.23 -1.8 735,199 - MPMX19_00712 0.23 -1.4 735,199 - MPMX19_00712 0.23 -2.1 735,199 - MPMX19_00712 0.23 +0.9 735,216 + MPMX19_00712 0.27 -0.2 735,216 + MPMX19_00712 0.27 +0.6 735,216 + MPMX19_00712 0.27 +0.1 735,300 + MPMX19_00712 0.45 -1.2 735,300 + MPMX19_00712 0.45 +0.2 735,300 + MPMX19_00712 0.45 +0.7 735,300 + MPMX19_00712 0.45 -0.7 735,300 + MPMX19_00712 0.45 -0.5 735,301 - MPMX19_00712 0.45 -1.2 735,301 - MPMX19_00712 0.45 -1.3 735,301 - MPMX19_00712 0.45 -0.1 735,301 - MPMX19_00712 0.45 -0.8 735,301 - MPMX19_00712 0.45 -0.9 735,327 + MPMX19_00712 0.50 -1.2 735,327 + MPMX19_00712 0.50 -1.0 735,626 + -0.6 735,626 + -1.7 735,626 + +0.1 735,626 + -0.6 735,626 + +0.4 735,626 + +0.1 735,626 + -1.5 735,626 + -1.7 735,626 + +0.5 735,626 + -0.5 735,626 + +0.7 735,626 + -0.1 735,626 + +0.5 735,626 + -0.8 735,626 + -0.3 735,626 + -0.9 735,627 - +0.1 735,627 - -1.8 735,627 - +0.4 735,627 - -1.3 735,627 - +2.1 735,627 - +0.1 735,627 - -0.9 735,627 - +0.4 735,627 - -0.0 735,627 - -1.5 735,627 - -0.0 735,627 - -1.2 735,627 - -0.7 735,627 - -0.8 735,627 - -0.3 735,627 - -1.3 735,627 - -0.3 735,628 + -0.2 735,628 + -0.1 735,628 + -1.2 735,628 + +0.3 735,628 + -0.9 735,628 + -1.1 735,628 + -1.2 735,628 + -1.3 735,628 + +0.1 735,628 + -1.9 735,628 + +1.7 735,628 + -0.9 735,628 + -1.8 735,628 + +1.3 735,628 + +1.3 735,628 + -2.2 735,628 + -1.2 735,628 + +0.1 735,628 + -2.0 735,628 + -0.6 735,628 + -0.9 735,628 + -0.1 735,628 + -0.7 735,628 + -1.0 735,628 + -1.5 735,628 + -0.3 735,629 - -1.5 735,629 - -1.0 735,629 - +0.1 735,629 - -1.0 735,629 - -0.3 735,629 - +0.2 735,629 - -1.3 735,629 - +0.3 735,629 - +0.7 735,629 - -1.3 735,629 - -0.7 735,629 - -1.0 735,629 - -2.0 735,629 - +0.1 735,629 - -1.0 735,629 - -0.5 735,629 - +0.7 735,629 - -0.6 735,629 - +0.1 735,629 - -0.4 735,629 - -1.3 735,629 - -0.2 735,629 - -1.2 735,629 - -0.7 735,629 - -1.3 735,629 - +0.9 735,629 - -0.5 735,629 - -0.2 735,629 - +0.2 735,629 - -0.0 735,629 - -0.5 735,629 - -1.3 735,629 - -0.9 735,629 - -1.4 735,629 - -0.3 735,629 - -1.6 735,629 - -2.9 735,629 - -0.3 735,629 - -1.7 735,629 - +0.1 735,629 - -1.0 735,629 - +0.5 735,638 + -1.5 735,638 + +0.1 735,638 + +0.1 735,638 + -1.4 735,639 - -1.3 736,389 + -0.7 736,419 - -1.7 736,419 - -0.7 736,429 + +0.1 736,429 + +0.5 736,429 + +0.7 736,429 + +0.9 736,429 + +0.4 736,429 + -0.1 736,429 + -0.0 736,429 + +0.1 736,430 - -1.8 736,430 - -1.3 736,430 - -1.2 736,430 - -1.5 736,443 + -0.0 736,443 + -0.2 736,540 - -1.0 736,540 - -2.6 736,540 - -0.7 736,548 + -0.4 736,548 + -0.8 736,548 + -0.5 736,548 + -1.2 736,548 + +0.4 736,548 + +0.4 736,548 + -2.6 736,548 + -1.3 736,548 + -1.9 736,548 + -1.8 736,548 + +0.1 736,548 + -3.2 736,548 + -1.6 736,548 + -1.5 736,548 + +0.1 736,548 + -3.3 736,548 + +0.3 736,548 + -1.0 736,548 + +0.1 736,548 + -2.2 736,548 + -0.8 736,548 + -2.7 736,548 + -2.2 736,548 + -0.3 736,548 + -1.2 736,549 - -0.7 736,549 - -0.8 736,549 - -2.6 736,549 - -2.5 736,549 - -0.5 736,549 - -3.4 736,549 - -3.6 736,549 - -1.2 736,549 - -0.0 736,549 - -1.8 736,549 - -3.3 736,549 - -0.3 736,549 - -2.2 736,549 - -0.3 736,549 - -1.7 736,549 - -0.7 736,549 - -0.9 736,549 - -1.5 736,549 - +0.2 736,549 - -1.8 736,549 - -3.4 736,549 - -0.7 736,549 - -2.0 736,549 - -1.8 736,549 - -0.3 736,549 - -0.3 736,599 + MPMX19_00714 0.13 -1.2 736,599 + MPMX19_00714 0.13 -1.9 736,599 + MPMX19_00714 0.13 -2.5 736,599 + MPMX19_00714 0.13 +0.1 736,599 + MPMX19_00714 0.13 -1.9 736,600 - MPMX19_00714 0.13 -1.2 736,600 - MPMX19_00714 0.13 +1.2 736,600 - MPMX19_00714 0.13 -1.3 736,600 - MPMX19_00714 0.13 +0.5 736,600 - MPMX19_00714 0.13 +1.7 736,600 - MPMX19_00714 0.13 +0.7 736,600 - MPMX19_00714 0.13 -2.2 736,600 - MPMX19_00714 0.13 -1.2 736,968 + MPMX19_00714 0.52 -0.5 736,968 + MPMX19_00714 0.52 -1.2 736,968 + MPMX19_00714 0.52 -1.9 736,968 + MPMX19_00714 0.52 -0.8 736,968 + MPMX19_00714 0.52 -1.8 736,968 + MPMX19_00714 0.52 -0.1 736,968 + MPMX19_00714 0.52 -2.2 736,968 + MPMX19_00714 0.52 -1.3 736,968 + MPMX19_00714 0.52 -0.6 736,968 + MPMX19_00714 0.52 -0.5 736,969 - MPMX19_00714 0.52 -2.3 736,969 - MPMX19_00714 0.52 -1.8 736,969 - MPMX19_00714 0.52 -2.3 736,969 - MPMX19_00714 0.52 -0.2 736,969 - MPMX19_00714 0.52 -0.8 736,969 - MPMX19_00714 0.52 -3.4 736,969 - MPMX19_00714 0.52 -1.4 736,969 - MPMX19_00714 0.52 -0.1 736,969 - MPMX19_00714 0.52 -3.3 736,969 - MPMX19_00714 0.52 -0.6 736,969 - MPMX19_00714 0.52 -1.6
Or see this region's nucleotide sequence