Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00675

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00673 and MPMX19_00674 are separated by 37 nucleotidesMPMX19_00674 and MPMX19_00675 are separated by 68 nucleotidesMPMX19_00675 and MPMX19_00676 are separated by 36 nucleotides MPMX19_00673: MPMX19_00673 - [Ribosomal protein S5]-alanine N-acetyltransferase, at 695,973 to 696,563 _00673 MPMX19_00674: MPMX19_00674 - hypothetical protein, at 696,601 to 696,870 _00674 MPMX19_00675: MPMX19_00675 - Peptidoglycan-associated lipoprotein, at 696,939 to 698,333 _00675 MPMX19_00676: MPMX19_00676 - hypothetical protein, at 698,370 to 699,515 _00676 Position (kb) 696 697 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.210 kb on + strand, within MPMX19_00673at 696.211 kb on - strand, within MPMX19_00673at 696.309 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.328 kb on - strand, within MPMX19_00673at 696.328 kb on - strand, within MPMX19_00673at 696.328 kb on - strand, within MPMX19_00673at 696.328 kb on - strand, within MPMX19_00673at 696.328 kb on - strand, within MPMX19_00673at 696.328 kb on - strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.480 kb on + strand, within MPMX19_00673at 696.480 kb on + strand, within MPMX19_00673at 696.480 kb on + strand, within MPMX19_00673at 696.481 kb on - strand, within MPMX19_00673at 696.493 kb on - strand, within MPMX19_00673at 696.531 kb on + strandat 696.531 kb on + strandat 696.531 kb on + strandat 696.531 kb on + strandat 696.531 kb on + strandat 696.531 kb on + strandat 696.532 kb on - strandat 696.532 kb on - strandat 696.532 kb on - strandat 696.532 kb on - strandat 696.532 kb on - strandat 696.561 kb on + strandat 696.561 kb on + strandat 696.561 kb on + strandat 696.561 kb on + strandat 696.561 kb on + strandat 696.561 kb on + strandat 696.561 kb on + strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.744 kb on + strand, within MPMX19_00674at 696.744 kb on + strand, within MPMX19_00674at 696.744 kb on + strand, within MPMX19_00674at 696.744 kb on + strand, within MPMX19_00674at 696.744 kb on + strand, within MPMX19_00674at 696.745 kb on - strand, within MPMX19_00674at 696.745 kb on - strand, within MPMX19_00674at 696.745 kb on - strand, within MPMX19_00674at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 698.091 kb on + strand, within MPMX19_00675at 698.092 kb on - strand, within MPMX19_00675at 698.206 kb on + strandat 698.206 kb on + strandat 698.206 kb on + strandat 698.206 kb on + strandat 698.206 kb on + strandat 698.207 kb on - strandat 698.207 kb on - strandat 698.207 kb on - strandat 698.207 kb on - strandat 698.207 kb on - strandat 698.472 kb on - strandat 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.500 kb on + strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.501 kb on - strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.639 kb on + strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.640 kb on - strand, within MPMX19_00676at 698.780 kb on - strand, within MPMX19_00676at 698.780 kb on - strand, within MPMX19_00676at 698.780 kb on - strand, within MPMX19_00676at 699.136 kb on + strand, within MPMX19_00676at 699.136 kb on + strand, within MPMX19_00676at 699.137 kb on - strand, within MPMX19_00676at 699.137 kb on - strand, within MPMX19_00676at 699.137 kb on - strand, within MPMX19_00676at 699.137 kb on - strand, within MPMX19_00676at 699.304 kb on + strand, within MPMX19_00676at 699.304 kb on + strand, within MPMX19_00676at 699.304 kb on + strand, within MPMX19_00676at 699.305 kb on - strand, within MPMX19_00676at 699.305 kb on - strand, within MPMX19_00676

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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696,039 + MPMX19_00673 0.11 +0.1
696,039 + MPMX19_00673 0.11 -0.3
696,039 + MPMX19_00673 0.11 -1.7
696,039 + MPMX19_00673 0.11 -0.8
696,039 + MPMX19_00673 0.11 +0.9
696,039 + MPMX19_00673 0.11 -0.2
696,039 + MPMX19_00673 0.11 -1.0
696,039 + MPMX19_00673 0.11 -0.5
696,039 + MPMX19_00673 0.11 +0.1
696,039 + MPMX19_00673 0.11 -0.9
696,039 + MPMX19_00673 0.11 -1.1
696,039 + MPMX19_00673 0.11 -1.2
696,039 + MPMX19_00673 0.11 -0.9
696,039 + MPMX19_00673 0.11 +0.0
696,039 + MPMX19_00673 0.11 -0.3
696,039 + MPMX19_00673 0.11 -0.1
696,039 + MPMX19_00673 0.11 +0.9
696,039 + MPMX19_00673 0.11 +0.7
696,039 + MPMX19_00673 0.11 -1.5
696,039 + MPMX19_00673 0.11 +0.1
696,039 + MPMX19_00673 0.11 -0.0
696,039 + MPMX19_00673 0.11 -0.8
696,039 + MPMX19_00673 0.11 -0.5
696,039 + MPMX19_00673 0.11 -0.3
696,040 - MPMX19_00673 0.11 -1.9
696,040 - MPMX19_00673 0.11 -0.7
696,040 - MPMX19_00673 0.11 -0.9
696,040 - MPMX19_00673 0.11 +0.2
696,040 - MPMX19_00673 0.11 +0.1
696,040 - MPMX19_00673 0.11 +0.0
696,040 - MPMX19_00673 0.11 -0.5
696,040 - MPMX19_00673 0.11 -0.2
696,040 - MPMX19_00673 0.11 -0.5
696,040 - MPMX19_00673 0.11 -0.8
696,040 - MPMX19_00673 0.11 -0.5
696,040 - MPMX19_00673 0.11 -0.3
696,040 - MPMX19_00673 0.11 -1.6
696,040 - MPMX19_00673 0.11 +0.2
696,040 - MPMX19_00673 0.11 -1.3
696,040 - MPMX19_00673 0.11 -0.2
696,040 - MPMX19_00673 0.11 -0.5
696,040 - MPMX19_00673 0.11 +0.9
696,040 - MPMX19_00673 0.11 -1.0
696,210 + MPMX19_00673 0.40 +0.7
696,211 - MPMX19_00673 0.40 -0.0
696,309 + MPMX19_00673 0.57 -0.7
696,327 + MPMX19_00673 0.60 -0.2
696,327 + MPMX19_00673 0.60 -2.9
696,327 + MPMX19_00673 0.60 -0.8
696,327 + MPMX19_00673 0.60 -1.8
696,327 + MPMX19_00673 0.60 +0.2
696,327 + MPMX19_00673 0.60 -2.2
696,327 + MPMX19_00673 0.60 +0.4
696,327 + MPMX19_00673 0.60 -0.3
696,327 + MPMX19_00673 0.60 -2.0
696,328 - MPMX19_00673 0.60 -1.8
696,328 - MPMX19_00673 0.60 -1.3
696,328 - MPMX19_00673 0.60 -1.2
696,328 - MPMX19_00673 0.60 -1.6
696,328 - MPMX19_00673 0.60 -1.0
696,328 - MPMX19_00673 0.60 -1.8
696,342 + MPMX19_00673 0.62 +1.7
696,342 + MPMX19_00673 0.62 -0.9
696,342 + MPMX19_00673 0.62 -0.2
696,342 + MPMX19_00673 0.62 -0.7
696,342 + MPMX19_00673 0.62 +0.7
696,342 + MPMX19_00673 0.62 +0.1
696,342 + MPMX19_00673 0.62 -0.7
696,342 + MPMX19_00673 0.62 +0.8
696,342 + MPMX19_00673 0.62 -1.3
696,342 + MPMX19_00673 0.62 -0.1
696,342 + MPMX19_00673 0.62 +0.1
696,342 + MPMX19_00673 0.62 -0.3
696,343 - MPMX19_00673 0.63 -1.7
696,343 - MPMX19_00673 0.63 +0.7
696,343 - MPMX19_00673 0.63 -0.2
696,343 - MPMX19_00673 0.63 -1.0
696,343 - MPMX19_00673 0.63 +2.2
696,343 - MPMX19_00673 0.63 +1.4
696,343 - MPMX19_00673 0.63 +0.1
696,343 - MPMX19_00673 0.63 -0.0
696,343 - MPMX19_00673 0.63 +0.3
696,343 - MPMX19_00673 0.63 -1.5
696,343 - MPMX19_00673 0.63 -0.8
696,343 - MPMX19_00673 0.63 -0.7
696,480 + MPMX19_00673 0.86 +0.7
696,480 + MPMX19_00673 0.86 -1.4
696,480 + MPMX19_00673 0.86 -0.9
696,481 - MPMX19_00673 0.86 -0.5
696,493 - MPMX19_00673 0.88 -0.4
696,531 + +2.0
696,531 + +0.5
696,531 + -1.7
696,531 + -1.4
696,531 + -1.3
696,531 + +0.8
696,532 - +0.8
696,532 - -1.0
696,532 - -1.3
696,532 - +0.2
696,532 - +0.7
696,561 + -0.8
696,561 + +0.1
696,561 + -1.7
696,561 + -0.0
696,561 + -0.2
696,561 + -0.6
696,561 + +1.7
696,562 - -1.3
696,562 - +0.3
696,562 - -1.3
696,562 - -0.8
696,562 - -1.5
696,562 - -0.9
696,562 - -0.3
696,562 - -1.0
696,562 - -1.5
696,562 - -1.8
696,744 + MPMX19_00674 0.53 -1.2
696,744 + MPMX19_00674 0.53 -0.1
696,744 + MPMX19_00674 0.53 +0.0
696,744 + MPMX19_00674 0.53 -0.1
696,744 + MPMX19_00674 0.53 +0.2
696,745 - MPMX19_00674 0.53 +0.2
696,745 - MPMX19_00674 0.53 -0.9
696,745 - MPMX19_00674 0.53 -0.7
697,382 - MPMX19_00675 0.32 +0.3
697,382 - MPMX19_00675 0.32 -0.8
697,382 - MPMX19_00675 0.32 -1.3
697,382 - MPMX19_00675 0.32 +1.2
697,382 - MPMX19_00675 0.32 -0.8
697,382 - MPMX19_00675 0.32 -2.0
697,382 - MPMX19_00675 0.32 -1.3
698,091 + MPMX19_00675 0.83 -1.5
698,092 - MPMX19_00675 0.83 -0.5
698,206 + -2.2
698,206 + +0.7
698,206 + -0.8
698,206 + -0.7
698,206 + -0.3
698,207 - +1.2
698,207 - -1.3
698,207 - +0.5
698,207 - -0.1
698,207 - -0.7
698,472 - -0.0
698,500 + MPMX19_00676 0.11 -1.9
698,500 + MPMX19_00676 0.11 +0.8
698,500 + MPMX19_00676 0.11 +0.8
698,500 + MPMX19_00676 0.11 +0.1
698,500 + MPMX19_00676 0.11 -1.7
698,500 + MPMX19_00676 0.11 -0.6
698,500 + MPMX19_00676 0.11 -1.2
698,500 + MPMX19_00676 0.11 -0.1
698,500 + MPMX19_00676 0.11 -0.7
698,500 + MPMX19_00676 0.11 +1.0
698,500 + MPMX19_00676 0.11 -0.5
698,500 + MPMX19_00676 0.11 +1.2
698,500 + MPMX19_00676 0.11 -0.5
698,500 + MPMX19_00676 0.11 -1.5
698,500 + MPMX19_00676 0.11 -0.7
698,500 + MPMX19_00676 0.11 -2.0
698,500 + MPMX19_00676 0.11 -1.0
698,500 + MPMX19_00676 0.11 -0.7
698,500 + MPMX19_00676 0.11 -0.1
698,500 + MPMX19_00676 0.11 +0.1
698,500 + MPMX19_00676 0.11 -1.4
698,500 + MPMX19_00676 0.11 -0.9
698,501 - MPMX19_00676 0.11 -0.0
698,501 - MPMX19_00676 0.11 -0.3
698,501 - MPMX19_00676 0.11 -2.3
698,501 - MPMX19_00676 0.11 -1.7
698,501 - MPMX19_00676 0.11 +0.7
698,501 - MPMX19_00676 0.11 +0.8
698,501 - MPMX19_00676 0.11 -0.7
698,501 - MPMX19_00676 0.11 -0.5
698,501 - MPMX19_00676 0.11 +1.7
698,501 - MPMX19_00676 0.11 -0.3
698,501 - MPMX19_00676 0.11 -0.3
698,501 - MPMX19_00676 0.11 -1.6
698,501 - MPMX19_00676 0.11 +0.2
698,501 - MPMX19_00676 0.11 +0.7
698,501 - MPMX19_00676 0.11 -0.9
698,501 - MPMX19_00676 0.11 +0.4
698,501 - MPMX19_00676 0.11 -0.1
698,501 - MPMX19_00676 0.11 -0.9
698,639 + MPMX19_00676 0.23 -0.9
698,639 + MPMX19_00676 0.23 +0.7
698,639 + MPMX19_00676 0.23 -1.2
698,639 + MPMX19_00676 0.23 +0.2
698,639 + MPMX19_00676 0.23 -1.3
698,639 + MPMX19_00676 0.23 +0.4
698,639 + MPMX19_00676 0.23 +0.4
698,639 + MPMX19_00676 0.23 +0.7
698,639 + MPMX19_00676 0.23 +0.5
698,639 + MPMX19_00676 0.23 -1.3
698,639 + MPMX19_00676 0.23 +1.1
698,640 - MPMX19_00676 0.24 +0.7
698,640 - MPMX19_00676 0.24 -0.8
698,640 - MPMX19_00676 0.24 -0.1
698,640 - MPMX19_00676 0.24 -1.7
698,640 - MPMX19_00676 0.24 -1.5
698,640 - MPMX19_00676 0.24 -0.3
698,640 - MPMX19_00676 0.24 -1.0
698,640 - MPMX19_00676 0.24 -2.7
698,640 - MPMX19_00676 0.24 -0.4
698,780 - MPMX19_00676 0.36 -0.4
698,780 - MPMX19_00676 0.36 +0.2
698,780 - MPMX19_00676 0.36 -0.9
699,136 + MPMX19_00676 0.67 +0.1
699,136 + MPMX19_00676 0.67 -1.7
699,137 - MPMX19_00676 0.67 +0.8
699,137 - MPMX19_00676 0.67 -0.2
699,137 - MPMX19_00676 0.67 -0.1
699,137 - MPMX19_00676 0.67 -1.0
699,304 + MPMX19_00676 0.82 -1.3
699,304 + MPMX19_00676 0.82 -1.5
699,304 + MPMX19_00676 0.82 -1.3
699,305 - MPMX19_00676 0.82 +0.2
699,305 - MPMX19_00676 0.82 -0.4

Or see this region's nucleotide sequence