Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00255 and MPMX19_00256 are separated by 239 nucleotides MPMX19_00256 and MPMX19_00257 are separated by 118 nucleotides MPMX19_00257 and MPMX19_00258 are separated by 121 nucleotides
MPMX19_00255: MPMX19_00255 - hypothetical protein, at 256,039 to 257,199
_00255
MPMX19_00256: MPMX19_00256 - hypothetical protein, at 257,439 to 257,933
_00256
MPMX19_00257: MPMX19_00257 - hypothetical protein, at 258,052 to 258,627
_00257
MPMX19_00258: MPMX19_00258 - Protein ImuB, at 258,749 to 260,293
_00258
Position (kb) 257
258 Strain fitness (log2 ratio) -2
-1
0
1
2 at 256.463 kb on + strand, within MPMX19_00255 at 256.463 kb on + strand, within MPMX19_00255 at 256.463 kb on + strand, within MPMX19_00255 at 256.463 kb on + strand, within MPMX19_00255 at 256.463 kb on + strand, within MPMX19_00255 at 256.463 kb on + strand, within MPMX19_00255 at 256.463 kb on + strand, within MPMX19_00255 at 256.463 kb on + strand, within MPMX19_00255 at 256.463 kb on + strand, within MPMX19_00255 at 256.463 kb on + strand, within MPMX19_00255 at 256.463 kb on + strand, within MPMX19_00255 at 256.464 kb on - strand, within MPMX19_00255 at 256.464 kb on - strand, within MPMX19_00255 at 256.464 kb on - strand, within MPMX19_00255 at 256.464 kb on - strand, within MPMX19_00255 at 256.464 kb on - strand, within MPMX19_00255 at 256.464 kb on - strand, within MPMX19_00255 at 256.464 kb on - strand, within MPMX19_00255 at 256.464 kb on - strand, within MPMX19_00255 at 256.637 kb on + strand, within MPMX19_00255 at 256.637 kb on + strand, within MPMX19_00255 at 256.637 kb on + strand, within MPMX19_00255 at 256.638 kb on - strand, within MPMX19_00255 at 256.638 kb on - strand, within MPMX19_00255 at 256.638 kb on - strand, within MPMX19_00255 at 256.638 kb on - strand, within MPMX19_00255 at 256.638 kb on - strand, within MPMX19_00255 at 256.638 kb on - strand, within MPMX19_00255 at 256.638 kb on - strand, within MPMX19_00255 at 256.638 kb on - strand, within MPMX19_00255 at 256.638 kb on - strand, within MPMX19_00255 at 256.638 kb on - strand, within MPMX19_00255 at 256.671 kb on - strand, within MPMX19_00255 at 256.671 kb on - strand, within MPMX19_00255 at 256.671 kb on - strand, within MPMX19_00255 at 256.671 kb on - strand, within MPMX19_00255 at 256.805 kb on + strand, within MPMX19_00255 at 256.805 kb on + strand, within MPMX19_00255 at 256.805 kb on + strand, within MPMX19_00255 at 256.805 kb on + strand, within MPMX19_00255 at 256.806 kb on - strand, within MPMX19_00255 at 256.806 kb on - strand, within MPMX19_00255 at 256.806 kb on - strand, within MPMX19_00255 at 256.806 kb on - strand, within MPMX19_00255 at 256.806 kb on - strand, within MPMX19_00255 at 256.806 kb on - strand, within MPMX19_00255 at 256.806 kb on - strand, within MPMX19_00255 at 256.806 kb on - strand, within MPMX19_00255 at 256.806 kb on - strand, within MPMX19_00255 at 256.871 kb on + strand, within MPMX19_00255 at 256.871 kb on + strand, within MPMX19_00255 at 256.871 kb on + strand, within MPMX19_00255 at 256.871 kb on + strand, within MPMX19_00255 at 256.871 kb on + strand, within MPMX19_00255 at 256.871 kb on + strand, within MPMX19_00255 at 256.871 kb on + strand, within MPMX19_00255 at 256.872 kb on - strand, within MPMX19_00255 at 256.872 kb on - strand, within MPMX19_00255 at 256.872 kb on - strand, within MPMX19_00255 at 256.872 kb on - strand, within MPMX19_00255 at 256.872 kb on - strand, within MPMX19_00255 at 256.872 kb on - strand, within MPMX19_00255 at 256.880 kb on + strand, within MPMX19_00255 at 256.880 kb on + strand, within MPMX19_00255 at 256.880 kb on + strand, within MPMX19_00255 at 256.880 kb on + strand, within MPMX19_00255 at 256.881 kb on - strand, within MPMX19_00255 at 256.881 kb on - strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.108 kb on + strand at 257.108 kb on + strand at 257.108 kb on + strand at 257.109 kb on - strand at 257.109 kb on - strand at 257.109 kb on - strand at 257.478 kb on + strand at 257.478 kb on + strand at 257.478 kb on + strand at 257.479 kb on - strand at 257.479 kb on - strand at 257.593 kb on + strand, within MPMX19_00256 at 257.594 kb on - strand, within MPMX19_00256 at 257.737 kb on + strand, within MPMX19_00256 at 257.737 kb on + strand, within MPMX19_00256 at 257.737 kb on + strand, within MPMX19_00256 at 257.737 kb on + strand, within MPMX19_00256 at 257.737 kb on + strand, within MPMX19_00256 at 257.737 kb on + strand, within MPMX19_00256 at 257.738 kb on - strand, within MPMX19_00256 at 257.738 kb on - strand, within MPMX19_00256 at 257.738 kb on - strand, within MPMX19_00256 at 257.738 kb on - strand, within MPMX19_00256 at 257.738 kb on - strand, within MPMX19_00256 at 257.748 kb on + strand, within MPMX19_00256 at 257.748 kb on + strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.973 kb on - strand at 258.017 kb on + strand at 258.017 kb on + strand at 258.018 kb on - strand at 258.018 kb on - strand at 258.018 kb on - strand at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.707 kb on - strand at 258.729 kb on - strand at 258.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 256,463 + MPMX19_00255 0.37 -0.9 256,463 + MPMX19_00255 0.37 +0.2 256,463 + MPMX19_00255 0.37 -0.4 256,463 + MPMX19_00255 0.37 -0.8 256,463 + MPMX19_00255 0.37 +0.7 256,463 + MPMX19_00255 0.37 -0.7 256,463 + MPMX19_00255 0.37 +0.2 256,463 + MPMX19_00255 0.37 +0.2 256,463 + MPMX19_00255 0.37 +0.0 256,463 + MPMX19_00255 0.37 +0.2 256,463 + MPMX19_00255 0.37 +0.2 256,464 - MPMX19_00255 0.37 -1.5 256,464 - MPMX19_00255 0.37 -0.5 256,464 - MPMX19_00255 0.37 -1.3 256,464 - MPMX19_00255 0.37 +0.2 256,464 - MPMX19_00255 0.37 -1.1 256,464 - MPMX19_00255 0.37 -0.9 256,464 - MPMX19_00255 0.37 -0.9 256,464 - MPMX19_00255 0.37 +0.5 256,637 + MPMX19_00255 0.52 -0.7 256,637 + MPMX19_00255 0.52 -1.5 256,637 + MPMX19_00255 0.52 -1.7 256,638 - MPMX19_00255 0.52 -0.1 256,638 - MPMX19_00255 0.52 -0.1 256,638 - MPMX19_00255 0.52 +0.2 256,638 - MPMX19_00255 0.52 +0.6 256,638 - MPMX19_00255 0.52 +0.9 256,638 - MPMX19_00255 0.52 -0.8 256,638 - MPMX19_00255 0.52 -0.5 256,638 - MPMX19_00255 0.52 +0.8 256,638 - MPMX19_00255 0.52 +1.2 256,638 - MPMX19_00255 0.52 -0.0 256,671 - MPMX19_00255 0.54 -1.4 256,671 - MPMX19_00255 0.54 +1.0 256,671 - MPMX19_00255 0.54 +0.9 256,671 - MPMX19_00255 0.54 -0.1 256,805 + MPMX19_00255 0.66 +0.5 256,805 + MPMX19_00255 0.66 +0.1 256,805 + MPMX19_00255 0.66 -1.0 256,805 + MPMX19_00255 0.66 -0.7 256,806 - MPMX19_00255 0.66 -1.5 256,806 - MPMX19_00255 0.66 +0.2 256,806 - MPMX19_00255 0.66 +0.8 256,806 - MPMX19_00255 0.66 +0.5 256,806 - MPMX19_00255 0.66 -1.2 256,806 - MPMX19_00255 0.66 -0.1 256,806 - MPMX19_00255 0.66 -1.7 256,806 - MPMX19_00255 0.66 +0.2 256,806 - MPMX19_00255 0.66 -1.7 256,871 + MPMX19_00255 0.72 -1.1 256,871 + MPMX19_00255 0.72 -0.3 256,871 + MPMX19_00255 0.72 -0.6 256,871 + MPMX19_00255 0.72 +0.2 256,871 + MPMX19_00255 0.72 -0.6 256,871 + MPMX19_00255 0.72 +0.3 256,871 + MPMX19_00255 0.72 -0.5 256,872 - MPMX19_00255 0.72 -0.4 256,872 - MPMX19_00255 0.72 +1.1 256,872 - MPMX19_00255 0.72 -1.9 256,872 - MPMX19_00255 0.72 -1.6 256,872 - MPMX19_00255 0.72 -2.3 256,872 - MPMX19_00255 0.72 -0.4 256,880 + MPMX19_00255 0.72 -1.4 256,880 + MPMX19_00255 0.72 +0.4 256,880 + MPMX19_00255 0.72 -2.7 256,880 + MPMX19_00255 0.72 -0.4 256,881 - MPMX19_00255 0.73 +1.2 256,881 - MPMX19_00255 0.73 +0.2 257,072 + MPMX19_00255 0.89 -0.3 257,072 + MPMX19_00255 0.89 -1.7 257,072 + MPMX19_00255 0.89 -1.3 257,072 + MPMX19_00255 0.89 +1.6 257,072 + MPMX19_00255 0.89 -0.8 257,072 + MPMX19_00255 0.89 -1.5 257,072 + MPMX19_00255 0.89 -0.0 257,072 + MPMX19_00255 0.89 -0.0 257,072 + MPMX19_00255 0.89 +0.4 257,072 + MPMX19_00255 0.89 +0.2 257,072 + MPMX19_00255 0.89 +0.0 257,072 + MPMX19_00255 0.89 -0.4 257,072 + MPMX19_00255 0.89 -1.5 257,072 + MPMX19_00255 0.89 -0.2 257,072 + MPMX19_00255 0.89 +1.0 257,073 - MPMX19_00255 0.89 -1.5 257,073 - MPMX19_00255 0.89 -0.1 257,073 - MPMX19_00255 0.89 -0.8 257,073 - MPMX19_00255 0.89 -2.0 257,073 - MPMX19_00255 0.89 +0.1 257,073 - MPMX19_00255 0.89 -0.2 257,073 - MPMX19_00255 0.89 -0.0 257,073 - MPMX19_00255 0.89 -1.3 257,073 - MPMX19_00255 0.89 +1.2 257,073 - MPMX19_00255 0.89 -0.3 257,073 - MPMX19_00255 0.89 +1.0 257,073 - MPMX19_00255 0.89 -1.7 257,073 - MPMX19_00255 0.89 -1.0 257,073 - MPMX19_00255 0.89 +1.5 257,073 - MPMX19_00255 0.89 -2.0 257,073 - MPMX19_00255 0.89 -0.5 257,073 - MPMX19_00255 0.89 +0.3 257,073 - MPMX19_00255 0.89 +0.1 257,108 + -0.5 257,108 + -0.4 257,108 + +0.1 257,109 - +0.1 257,109 - -0.8 257,109 - -1.6 257,478 + -0.5 257,478 + -0.1 257,478 + -0.3 257,479 - +0.2 257,479 - +0.4 257,593 + MPMX19_00256 0.31 +0.5 257,594 - MPMX19_00256 0.31 -0.0 257,737 + MPMX19_00256 0.60 +0.2 257,737 + MPMX19_00256 0.60 -1.6 257,737 + MPMX19_00256 0.60 -0.2 257,737 + MPMX19_00256 0.60 -0.1 257,737 + MPMX19_00256 0.60 +0.5 257,737 + MPMX19_00256 0.60 -0.3 257,738 - MPMX19_00256 0.60 +1.1 257,738 - MPMX19_00256 0.60 -1.9 257,738 - MPMX19_00256 0.60 -1.9 257,738 - MPMX19_00256 0.60 +0.2 257,738 - MPMX19_00256 0.60 -0.1 257,748 + MPMX19_00256 0.62 -2.1 257,748 + MPMX19_00256 0.62 +1.6 257,749 - MPMX19_00256 0.63 +2.3 257,749 - MPMX19_00256 0.63 -0.2 257,749 - MPMX19_00256 0.63 -1.6 257,749 - MPMX19_00256 0.63 +0.4 257,749 - MPMX19_00256 0.63 +0.3 257,749 - MPMX19_00256 0.63 +0.3 257,973 - -2.3 258,017 + -2.1 258,017 + -0.3 258,018 - -0.8 258,018 - +0.2 258,018 - +1.1 258,482 + MPMX19_00257 0.75 +0.6 258,482 + MPMX19_00257 0.75 -0.8 258,482 + MPMX19_00257 0.75 -0.6 258,482 + MPMX19_00257 0.75 +0.3 258,482 + MPMX19_00257 0.75 -1.1 258,482 + MPMX19_00257 0.75 +0.5 258,483 - MPMX19_00257 0.75 -0.5 258,483 - MPMX19_00257 0.75 -0.9 258,483 - MPMX19_00257 0.75 -0.5 258,483 - MPMX19_00257 0.75 +1.3 258,483 - MPMX19_00257 0.75 -0.2 258,483 - MPMX19_00257 0.75 -0.4 258,483 - MPMX19_00257 0.75 -0.4 258,483 - MPMX19_00257 0.75 -0.1 258,483 - MPMX19_00257 0.75 -1.5 258,483 - MPMX19_00257 0.75 -0.2 258,629 + -0.6 258,629 + -1.4 258,629 + -1.1 258,629 + +0.2 258,629 + +0.2 258,629 + +0.4 258,629 + -0.6 258,629 + -0.9 258,629 + +1.1 258,629 + -2.5 258,629 + +0.8 258,629 + -0.8 258,629 + -0.9 258,629 + -0.4 258,629 + +0.1 258,630 - -0.6 258,630 - -0.1 258,630 - -0.4 258,630 - -0.6 258,630 - -0.7 258,630 - +1.2 258,630 - -1.1 258,630 - -2.0 258,630 - -0.3 258,630 - -0.7 258,707 - -0.2 258,729 - -0.1 258,895 - -0.1
Or see this region's nucleotide sequence