Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00235 and MPMX19_00236 are separated by 200 nucleotides MPMX19_00236 and MPMX19_00237 are separated by 109 nucleotides MPMX19_00237 and MPMX19_00238 are separated by 167 nucleotides
MPMX19_00235: MPMX19_00235 - hypothetical protein, at 239,283 to 239,576
_00235
MPMX19_00236: MPMX19_00236 - HTH-type transcriptional regulator IscR, at 239,777 to 240,232
_00236
MPMX19_00237: MPMX19_00237 - Cysteine synthase, at 240,342 to 241,301
_00237
MPMX19_00238: MPMX19_00238 - hypothetical protein, at 241,469 to 242,260
_00238
Position (kb) 240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 239.696 kb on + strand at 239.759 kb on + strand at 239.760 kb on - strand at 239.760 kb on - strand at 239.834 kb on + strand, within MPMX19_00236 at 239.834 kb on + strand, within MPMX19_00236 at 239.834 kb on + strand, within MPMX19_00236 at 239.834 kb on + strand, within MPMX19_00236 at 239.835 kb on - strand, within MPMX19_00236 at 239.835 kb on - strand, within MPMX19_00236 at 239.835 kb on - strand, within MPMX19_00236 at 239.835 kb on - strand, within MPMX19_00236 at 239.835 kb on - strand, within MPMX19_00236 at 239.900 kb on + strand, within MPMX19_00236 at 239.900 kb on + strand, within MPMX19_00236 at 239.901 kb on - strand, within MPMX19_00236 at 239.901 kb on - strand, within MPMX19_00236 at 239.901 kb on - strand, within MPMX19_00236 at 239.901 kb on - strand, within MPMX19_00236 at 240.230 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.235 kb on + strand at 240.236 kb on - strand at 240.236 kb on - strand at 240.236 kb on - strand at 240.236 kb on - strand at 240.236 kb on - strand at 240.236 kb on - strand at 240.373 kb on - strand at 240.373 kb on - strand at 240.633 kb on + strand, within MPMX19_00237 at 240.633 kb on + strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.634 kb on - strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.789 kb on + strand, within MPMX19_00237 at 240.790 kb on - strand, within MPMX19_00237 at 240.790 kb on - strand, within MPMX19_00237 at 240.790 kb on - strand, within MPMX19_00237 at 240.790 kb on - strand, within MPMX19_00237 at 240.790 kb on - strand, within MPMX19_00237 at 240.790 kb on - strand, within MPMX19_00237 at 241.266 kb on + strand at 241.266 kb on + strand at 241.266 kb on + strand at 241.267 kb on - strand at 241.267 kb on - strand at 241.267 kb on - strand at 241.267 kb on - strand at 241.299 kb on + strand at 241.299 kb on + strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.300 kb on - strand at 241.477 kb on + strand at 241.477 kb on + strand at 241.477 kb on + strand at 241.477 kb on + strand at 241.477 kb on + strand at 241.477 kb on + strand at 241.478 kb on - strand at 241.478 kb on - strand at 241.478 kb on - strand at 241.478 kb on - strand at 241.478 kb on - strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.494 kb on - strand at 241.610 kb on + strand, within MPMX19_00238 at 241.610 kb on + strand, within MPMX19_00238 at 241.610 kb on + strand, within MPMX19_00238 at 241.611 kb on - strand, within MPMX19_00238 at 241.611 kb on - strand, within MPMX19_00238 at 241.611 kb on - strand, within MPMX19_00238 at 241.611 kb on - strand, within MPMX19_00238 at 241.611 kb on - strand, within MPMX19_00238 at 241.611 kb on - strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.736 kb on + strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.737 kb on - strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.784 kb on + strand, within MPMX19_00238 at 241.785 kb on - strand, within MPMX19_00238 at 241.785 kb on - strand, within MPMX19_00238 at 241.785 kb on - strand, within MPMX19_00238 at 241.785 kb on - strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.045 kb on + strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.046 kb on - strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.066 kb on + strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238 at 242.067 kb on - strand, within MPMX19_00238
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 239,696 + +0.1 239,759 + +0.6 239,760 - -0.5 239,760 - -0.2 239,834 + MPMX19_00236 0.12 +1.5 239,834 + MPMX19_00236 0.12 -1.9 239,834 + MPMX19_00236 0.12 -2.8 239,834 + MPMX19_00236 0.12 -1.0 239,835 - MPMX19_00236 0.13 -1.7 239,835 - MPMX19_00236 0.13 +0.6 239,835 - MPMX19_00236 0.13 -0.9 239,835 - MPMX19_00236 0.13 +0.5 239,835 - MPMX19_00236 0.13 -0.5 239,900 + MPMX19_00236 0.27 +0.5 239,900 + MPMX19_00236 0.27 -2.2 239,901 - MPMX19_00236 0.27 -0.8 239,901 - MPMX19_00236 0.27 -0.2 239,901 - MPMX19_00236 0.27 -0.2 239,901 - MPMX19_00236 0.27 -1.4 240,230 + -1.4 240,235 + -0.8 240,235 + +1.5 240,235 + +0.1 240,235 + +0.0 240,235 + -0.1 240,235 + +0.2 240,235 + -0.3 240,235 + -1.2 240,235 + +1.2 240,235 + -0.9 240,236 - +0.5 240,236 - -1.4 240,236 - -0.7 240,236 - -1.0 240,236 - -0.0 240,236 - +0.2 240,373 - -0.8 240,373 - -0.2 240,633 + MPMX19_00237 0.30 -1.7 240,633 + MPMX19_00237 0.30 -1.2 240,634 - MPMX19_00237 0.30 -0.5 240,634 - MPMX19_00237 0.30 -0.2 240,634 - MPMX19_00237 0.30 -0.2 240,634 - MPMX19_00237 0.30 -0.9 240,634 - MPMX19_00237 0.30 -1.9 240,634 - MPMX19_00237 0.30 -1.0 240,634 - MPMX19_00237 0.30 -1.5 240,789 + MPMX19_00237 0.47 -1.1 240,789 + MPMX19_00237 0.47 +1.4 240,789 + MPMX19_00237 0.47 -0.2 240,789 + MPMX19_00237 0.47 +0.0 240,789 + MPMX19_00237 0.47 -1.4 240,789 + MPMX19_00237 0.47 +0.2 240,789 + MPMX19_00237 0.47 -0.0 240,790 - MPMX19_00237 0.47 +1.2 240,790 - MPMX19_00237 0.47 -0.6 240,790 - MPMX19_00237 0.47 +0.2 240,790 - MPMX19_00237 0.47 -1.9 240,790 - MPMX19_00237 0.47 -0.5 240,790 - MPMX19_00237 0.47 -0.8 241,266 + -2.3 241,266 + +0.4 241,266 + -2.3 241,267 - +2.8 241,267 - -1.5 241,267 - +0.1 241,267 - -1.2 241,299 + -1.2 241,299 + -0.3 241,300 - -1.2 241,300 - -1.1 241,300 - +0.2 241,300 - -0.4 241,300 - -2.4 241,300 - +0.3 241,300 - -0.5 241,300 - -1.7 241,477 + -0.2 241,477 + -0.3 241,477 + -1.5 241,477 + +0.2 241,477 + +1.0 241,477 + -1.2 241,478 - +0.1 241,478 - -1.8 241,478 - +0.0 241,478 - -1.0 241,478 - -1.1 241,493 + -0.1 241,493 + +0.5 241,493 + +0.8 241,493 + +0.8 241,493 + -1.4 241,493 + +1.0 241,493 + -1.0 241,493 + -0.4 241,493 + +1.1 241,493 + -1.1 241,493 + -0.8 241,493 + -1.2 241,493 + -0.0 241,493 + +1.6 241,493 + +0.2 241,493 + -0.1 241,493 + +1.0 241,493 + -0.7 241,493 + +1.5 241,493 + -0.4 241,494 - +2.1 241,494 - -0.4 241,494 - -0.0 241,494 - +0.1 241,494 - +0.7 241,494 - -1.5 241,494 - -0.8 241,494 - -0.4 241,494 - +0.2 241,494 - +0.1 241,494 - +0.0 241,494 - -1.0 241,494 - -0.4 241,494 - -0.1 241,494 - +0.4 241,494 - +0.1 241,494 - -1.0 241,494 - -2.1 241,494 - -0.7 241,494 - -0.1 241,494 - -2.7 241,494 - +0.1 241,494 - -0.8 241,494 - -0.4 241,494 - -0.0 241,494 - +1.1 241,610 + MPMX19_00238 0.18 +1.1 241,610 + MPMX19_00238 0.18 -0.7 241,610 + MPMX19_00238 0.18 -2.5 241,611 - MPMX19_00238 0.18 -0.5 241,611 - MPMX19_00238 0.18 -1.6 241,611 - MPMX19_00238 0.18 +1.2 241,611 - MPMX19_00238 0.18 +0.4 241,611 - MPMX19_00238 0.18 -0.4 241,611 - MPMX19_00238 0.18 +1.0 241,736 + MPMX19_00238 0.34 -1.7 241,736 + MPMX19_00238 0.34 -0.3 241,736 + MPMX19_00238 0.34 -0.7 241,736 + MPMX19_00238 0.34 -1.2 241,736 + MPMX19_00238 0.34 +1.0 241,736 + MPMX19_00238 0.34 -1.2 241,736 + MPMX19_00238 0.34 +0.2 241,736 + MPMX19_00238 0.34 -1.5 241,736 + MPMX19_00238 0.34 +0.0 241,736 + MPMX19_00238 0.34 +1.1 241,736 + MPMX19_00238 0.34 -0.5 241,736 + MPMX19_00238 0.34 -1.0 241,736 + MPMX19_00238 0.34 -1.3 241,736 + MPMX19_00238 0.34 -0.1 241,737 - MPMX19_00238 0.34 -0.6 241,737 - MPMX19_00238 0.34 -0.9 241,737 - MPMX19_00238 0.34 -0.5 241,737 - MPMX19_00238 0.34 +0.2 241,737 - MPMX19_00238 0.34 +0.1 241,737 - MPMX19_00238 0.34 -0.7 241,737 - MPMX19_00238 0.34 +0.9 241,737 - MPMX19_00238 0.34 -0.6 241,784 + MPMX19_00238 0.40 -0.5 241,784 + MPMX19_00238 0.40 -1.5 241,784 + MPMX19_00238 0.40 +0.2 241,784 + MPMX19_00238 0.40 +0.8 241,784 + MPMX19_00238 0.40 -0.3 241,784 + MPMX19_00238 0.40 +0.6 241,784 + MPMX19_00238 0.40 -0.8 241,784 + MPMX19_00238 0.40 -1.4 241,785 - MPMX19_00238 0.40 -0.8 241,785 - MPMX19_00238 0.40 -0.1 241,785 - MPMX19_00238 0.40 -0.2 241,785 - MPMX19_00238 0.40 +0.3 242,045 + MPMX19_00238 0.73 -0.8 242,045 + MPMX19_00238 0.73 +0.5 242,045 + MPMX19_00238 0.73 -0.2 242,045 + MPMX19_00238 0.73 -0.7 242,045 + MPMX19_00238 0.73 -0.7 242,045 + MPMX19_00238 0.73 +1.2 242,045 + MPMX19_00238 0.73 -1.4 242,045 + MPMX19_00238 0.73 -0.3 242,045 + MPMX19_00238 0.73 -0.0 242,045 + MPMX19_00238 0.73 -0.2 242,045 + MPMX19_00238 0.73 -0.5 242,045 + MPMX19_00238 0.73 -0.3 242,045 + MPMX19_00238 0.73 +0.9 242,045 + MPMX19_00238 0.73 -0.2 242,045 + MPMX19_00238 0.73 -2.4 242,045 + MPMX19_00238 0.73 -0.8 242,045 + MPMX19_00238 0.73 -0.7 242,045 + MPMX19_00238 0.73 -0.3 242,046 - MPMX19_00238 0.73 +0.4 242,046 - MPMX19_00238 0.73 -1.4 242,046 - MPMX19_00238 0.73 -0.5 242,046 - MPMX19_00238 0.73 +0.0 242,046 - MPMX19_00238 0.73 +0.2 242,046 - MPMX19_00238 0.73 -0.2 242,046 - MPMX19_00238 0.73 -2.4 242,046 - MPMX19_00238 0.73 -1.5 242,046 - MPMX19_00238 0.73 -0.6 242,046 - MPMX19_00238 0.73 +0.4 242,046 - MPMX19_00238 0.73 +1.9 242,046 - MPMX19_00238 0.73 -0.5 242,046 - MPMX19_00238 0.73 +0.6 242,046 - MPMX19_00238 0.73 -0.5 242,046 - MPMX19_00238 0.73 +0.2 242,046 - MPMX19_00238 0.73 -0.1 242,046 - MPMX19_00238 0.73 -1.5 242,046 - MPMX19_00238 0.73 -0.2 242,046 - MPMX19_00238 0.73 +1.5 242,066 + MPMX19_00238 0.75 -0.7 242,066 + MPMX19_00238 0.75 -3.1 242,066 + MPMX19_00238 0.75 +0.9 242,066 + MPMX19_00238 0.75 +0.3 242,066 + MPMX19_00238 0.75 -0.3 242,066 + MPMX19_00238 0.75 -0.4 242,066 + MPMX19_00238 0.75 -0.4 242,066 + MPMX19_00238 0.75 -0.1 242,066 + MPMX19_00238 0.75 +0.2 242,066 + MPMX19_00238 0.75 -0.3 242,066 + MPMX19_00238 0.75 -0.8 242,066 + MPMX19_00238 0.75 +0.2 242,066 + MPMX19_00238 0.75 -0.5 242,066 + MPMX19_00238 0.75 +1.1 242,066 + MPMX19_00238 0.75 -0.0 242,066 + MPMX19_00238 0.75 -1.1 242,066 + MPMX19_00238 0.75 -0.9 242,066 + MPMX19_00238 0.75 +0.2 242,066 + MPMX19_00238 0.75 -0.5 242,067 - MPMX19_00238 0.76 -0.2 242,067 - MPMX19_00238 0.76 -0.4 242,067 - MPMX19_00238 0.76 +0.8 242,067 - MPMX19_00238 0.76 +1.2 242,067 - MPMX19_00238 0.76 -0.5 242,067 - MPMX19_00238 0.76 -0.2 242,067 - MPMX19_00238 0.76 -0.1 242,067 - MPMX19_00238 0.76 -2.0 242,067 - MPMX19_00238 0.76 +0.5 242,067 - MPMX19_00238 0.76 -0.5 242,067 - MPMX19_00238 0.76 -1.4 242,067 - MPMX19_00238 0.76 -0.6 242,067 - MPMX19_00238 0.76 -1.9 242,067 - MPMX19_00238 0.76 -1.4 242,067 - MPMX19_00238 0.76 -0.1 242,067 - MPMX19_00238 0.76 -2.1 242,067 - MPMX19_00238 0.76 -0.0 242,067 - MPMX19_00238 0.76 -0.5 242,067 - MPMX19_00238 0.76 -0.5 242,067 - MPMX19_00238 0.76 -1.4 242,067 - MPMX19_00238 0.76 -1.8 242,067 - MPMX19_00238 0.76 -0.2 242,067 - MPMX19_00238 0.76 -0.2 242,067 - MPMX19_00238 0.76 +1.6 242,067 - MPMX19_00238 0.76 +0.4
Or see this region's nucleotide sequence