Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00095

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
				remove
100,759	+			-0.3
100,759	+			-1.2
100,759	+			-0.9
100,759	+			+0.7
100,759	+			+1.2
100,759	+			-0.3
100,759	+			-1.8
100,759	+			-0.4
100,759	+			-1.2
100,759	+			-0.8
100,759	+			-1.7
100,759	+			-0.1
100,760	-			+0.0
100,760	-			+0.3
101,258	+	MPMX19_00094	0.52	-1.0
101,258	+	MPMX19_00094	0.52	-0.5
101,259	-	MPMX19_00094	0.52	-1.4
101,285	+	MPMX19_00094	0.62	+1.1
101,286	-	MPMX19_00094	0.62	+0.5
101,286	-	MPMX19_00094	0.62	-1.0
101,286	-	MPMX19_00094	0.62	+1.8
101,384	+			-0.7
101,384	+			-0.5
101,384	+			+0.1
101,384	+			-1.8
101,384	+			-0.2
101,385	-			-1.8
101,385	-			-0.8
101,385	-			+0.1
101,466	-			-2.0
101,466	-			-0.6
101,466	-			-1.0
101,473	-			-0.4
101,473	-			-0.5
101,514	+			+0.8
101,514	+			+1.4
101,514	+			-1.9
101,514	+			-0.3
101,515	-			+0.3
101,515	-			-1.3
101,516	+			-0.9
101,516	+			-0.2
101,516	+			-0.5
101,517	-			-0.7
101,517	-			-1.1
101,517	-			+0.4
101,529	+			-1.2
101,530	-			-0.1
101,530	-			+0.8
101,531	+			+0.2
101,531	+			-1.0
101,531	+			-0.6
101,532	-			+0.4
101,532	-			+0.2
101,532	-			-0.3
101,542	-			-0.8
101,554	+			+0.2
101,554	+			-1.1
101,554	+			+0.1
101,555	-			-0.4
101,555	-			+2.8
101,555	-			+0.4
101,555	-			-1.3
101,555	-			+0.8
101,555	-			-2.1
101,570	-			+1.5
101,571	+			-1.5
101,572	-			-0.1
101,745	-			+0.3
101,804	+			+0.1
101,804	+			-2.1
101,804	+			-0.7
101,804	+			+0.8
101,804	+			-0.1
101,804	+			+0.1
101,804	+			-0.9
101,804	+			-1.5
101,805	-			-0.2
101,805	-			-0.2
101,805	-			-0.0
101,849	+			-0.7
101,849	+			+1.5
101,849	+			-1.9
101,849	+			-0.4
101,849	+			+0.2
101,849	+			-0.8
101,849	+			+0.8
101,849	+			-1.7
101,850	-			-0.7
101,850	-			-0.1
101,850	-			+0.3
101,850	-			-1.6
101,850	-			-0.7
101,850	-			-1.4
101,850	-			-1.1
101,850	-			-0.4
101,850	-			+0.8
101,850	-			-1.7
101,850	-			-0.3
101,850	-			+0.5
101,850	-			-0.2
101,850	-			-0.2
102,017	+	MPMX19_00095	0.11	-0.5
102,017	+	MPMX19_00095	0.11	+0.2
102,018	-	MPMX19_00095	0.11	-0.6
102,018	-	MPMX19_00095	0.11	-0.3
102,018	-	MPMX19_00095	0.11	+1.2
102,233	+	MPMX19_00095	0.19	-1.4
102,233	+	MPMX19_00095	0.19	+0.6
102,233	+	MPMX19_00095	0.19	-1.5
102,233	+	MPMX19_00095	0.19	+0.3
102,234	-	MPMX19_00095	0.19	+0.4
102,234	-	MPMX19_00095	0.19	-0.2
102,234	-	MPMX19_00095	0.19	+0.8
102,234	-	MPMX19_00095	0.19	-0.1
102,234	-	MPMX19_00095	0.19	+0.5
102,234	-	MPMX19_00095	0.19	-0.5
102,614	+	MPMX19_00095	0.34	+1.8
102,615	-	MPMX19_00095	0.34	+0.1
102,615	-	MPMX19_00095	0.34	-0.1
102,615	-	MPMX19_00095	0.34	-0.4
102,615	-	MPMX19_00095	0.34	+0.6
102,642	-	MPMX19_00095	0.35	+0.0
103,274	+	MPMX19_00095	0.60	-0.8
103,274	+	MPMX19_00095	0.60	-0.1
103,535	+	MPMX19_00095	0.70	-0.3
103,535	+	MPMX19_00095	0.70	-0.2
103,535	+	MPMX19_00095	0.70	+0.6
103,535	+	MPMX19_00095	0.70	-0.5
103,535	+	MPMX19_00095	0.70	-0.1
103,536	-	MPMX19_00095	0.70	+0.9
103,536	-	MPMX19_00095	0.70	+0.7
103,536	-	MPMX19_00095	0.70	+0.8
103,536	-	MPMX19_00095	0.70	+0.9
103,536	-	MPMX19_00095	0.70	+0.0
103,536	-	MPMX19_00095	0.70	-0.9
103,536	-	MPMX19_00095	0.70	+1.2
103,536	-	MPMX19_00095	0.70	-0.8
104,046	-	MPMX19_00095	0.90	-0.5
104,485	+			+1.1
104,485	+			-0.5
104,485	+			+1.0
104,485	+			-0.4
104,486	-			+1.5
104,486	-			-0.2
104,486	-			-0.0
104,486	-			-1.5
104,512	-			-0.5
104,603	+	MPMX19_00096	0.22	-1.2
104,603	+	MPMX19_00096	0.22	-0.0
104,603	+	MPMX19_00096	0.22	-0.1
104,603	+	MPMX19_00096	0.22	-1.4
104,603	+	MPMX19_00096	0.22	+1.0
104,603	+	MPMX19_00096	0.22	+0.2
104,603	+	MPMX19_00096	0.22	-1.1
104,603	+	MPMX19_00096	0.22	-0.7
104,603	+	MPMX19_00096	0.22	-1.4
104,603	+	MPMX19_00096	0.22	-1.3
104,603	+	MPMX19_00096	0.22	+0.8
104,603	+	MPMX19_00096	0.22	-2.4
104,603	+	MPMX19_00096	0.22	-0.8
104,603	+	MPMX19_00096	0.22	+0.8
104,603	+	MPMX19_00096	0.22	-0.4
104,603	+	MPMX19_00096	0.22	-0.7
104,604	-	MPMX19_00096	0.22	+0.6
104,604	-	MPMX19_00096	0.22	-0.3
104,604	-	MPMX19_00096	0.22	-0.2
104,604	-	MPMX19_00096	0.22	+0.2
104,604	-	MPMX19_00096	0.22	-0.3
104,604	-	MPMX19_00096	0.22	-1.2
104,604	-	MPMX19_00096	0.22	-1.5
104,604	-	MPMX19_00096	0.22	+2.8
104,604	-	MPMX19_00096	0.22	-0.1
104,604	-	MPMX19_00096	0.22	+1.2
104,604	-	MPMX19_00096	0.22	+1.2
104,604	-	MPMX19_00096	0.22	-0.9
104,604	-	MPMX19_00096	0.22	-0.2
104,604	-	MPMX19_00096	0.22	-0.5
104,604	-	MPMX19_00096	0.22	+1.1
104,604	-	MPMX19_00096	0.22	-0.2
104,604	-	MPMX19_00096	0.22	+0.8
104,604	-	MPMX19_00096	0.22	-1.1
104,604	-	MPMX19_00096	0.22	-0.8
104,604	-	MPMX19_00096	0.22	-0.2
104,777	+	MPMX19_00096	0.58	-1.2
104,777	+	MPMX19_00096	0.58	+0.6
104,777	+	MPMX19_00096	0.58	-0.1
104,777	+	MPMX19_00096	0.58	+2.1
104,778	-	MPMX19_00096	0.58	+0.3
104,778	-	MPMX19_00096	0.58	-1.7
104,778	-	MPMX19_00096	0.58	-0.5
104,778	-	MPMX19_00096	0.58	-1.8
104,795	+	MPMX19_00096	0.62	-0.0
104,796	-	MPMX19_00096	0.62	+0.3
104,796	-	MPMX19_00096	0.62	+0.6
104,796	-	MPMX19_00096	0.62	+1.1
104,796	-	MPMX19_00096	0.62	-0.0
104,843	+	MPMX19_00096	0.72	-1.6
104,843	+	MPMX19_00096	0.72	+0.7
104,843	+	MPMX19_00096	0.72	+0.2
104,843	+	MPMX19_00096	0.72	+0.6
104,843	+	MPMX19_00096	0.72	-0.8
104,843	+	MPMX19_00096	0.72	-1.0
104,843	+	MPMX19_00096	0.72	-0.7
104,843	+	MPMX19_00096	0.72	-1.0
104,843	+	MPMX19_00096	0.72	-0.7
104,843	+	MPMX19_00096	0.72	-1.9
104,844	-	MPMX19_00096	0.72	-0.2
104,844	-	MPMX19_00096	0.72	-0.4
104,844	-	MPMX19_00096	0.72	-0.1
104,844	-	MPMX19_00096	0.72	-0.6
104,844	-	MPMX19_00096	0.72	-0.1
104,844	-	MPMX19_00096	0.72	+0.2
104,844	-	MPMX19_00096	0.72	-1.0
104,844	-	MPMX19_00096	0.72	-2.7
104,844	-	MPMX19_00096	0.72	-0.3
104,844	-	MPMX19_00096	0.72	-0.6
104,844	-	MPMX19_00096	0.72	-0.6
104,844	-	MPMX19_00096	0.72	+0.2
104,844	-	MPMX19_00096	0.72	+1.3
104,844	-	MPMX19_00096	0.72	-0.9
104,844	-	MPMX19_00096	0.72	-2.5
104,844	-	MPMX19_00096	0.72	-0.0
104,844	-	MPMX19_00096	0.72	+0.2
105,014	+			-0.5
105,014	+			-0.8
105,014	+			+1.1
105,014	+			-0.5
105,014	+			-0.9
105,014	+			-0.5
105,015	-			-1.2
105,015	-			+0.1
105,015	-			-2.5
105,015	-			+0.0
105,015	-			+0.8
105,015	-			-0.2
105,015	-			-0.5
105,044	+	MPMX19_00097	0.15	+1.3
105,044	+	MPMX19_00097	0.15	-0.2
105,044	+	MPMX19_00097	0.15	+1.0
105,044	+	MPMX19_00097	0.15	-2.4
105,044	+	MPMX19_00097	0.15	-1.0
105,045	-	MPMX19_00097	0.15	+0.1
105,045	-	MPMX19_00097	0.15	-1.2
105,045	-	MPMX19_00097	0.15	-0.0
105,045	-	MPMX19_00097	0.15	-0.2
105,045	-	MPMX19_00097	0.15	-0.2
105,045	-	MPMX19_00097	0.15	-0.4
105,045	-	MPMX19_00097	0.15	-0.5
105,045	-	MPMX19_00097	0.15	+0.2
105,065	+	MPMX19_00097	0.24	+0.7
105,065	+	MPMX19_00097	0.24	+0.5
105,065	+	MPMX19_00097	0.24	-0.5
105,065	+	MPMX19_00097	0.24	+0.3
105,065	+	MPMX19_00097	0.24	-1.5
105,065	+	MPMX19_00097	0.24	-0.6
105,065	+	MPMX19_00097	0.24	-1.9
105,066	-	MPMX19_00097	0.25	+0.1
105,066	-	MPMX19_00097	0.25	-1.4
105,066	-	MPMX19_00097	0.25	-2.0
105,066	-	MPMX19_00097	0.25	-0.2
105,066	-	MPMX19_00097	0.25	-0.6
105,066	-	MPMX19_00097	0.25	+0.3
105,128	+	MPMX19_00097	0.54	-0.5
105,128	+	MPMX19_00097	0.54	+0.3
105,128	+	MPMX19_00097	0.54	+0.5
105,128	+	MPMX19_00097	0.54	-0.2
105,128	+	MPMX19_00097	0.54	-0.1
105,128	+	MPMX19_00097	0.54	+0.5
105,129	-	MPMX19_00097	0.54	-1.6
105,129	-	MPMX19_00097	0.54	+0.7
105,129	-	MPMX19_00097	0.54	-0.2
105,129	-	MPMX19_00097	0.54	+0.2

Or see this region's nucleotide sequence