Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00082

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00080 and MPMX19_00081 are separated by 435 nucleotidesMPMX19_00081 and MPMX19_00082 are separated by 35 nucleotidesMPMX19_00082 and MPMX19_00083 are separated by 135 nucleotides MPMX19_00080: MPMX19_00080 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 85,924 to 86,730 _00080 MPMX19_00081: MPMX19_00081 - 50S ribosomal protein L35, at 87,166 to 87,417 _00081 MPMX19_00082: MPMX19_00082 - 50S ribosomal protein L20, at 87,453 to 87,824 _00082 MPMX19_00083: MPMX19_00083 - Phenylalanine--tRNA ligase alpha subunit, at 87,960 to 89,027 _00083 Position (kb) 87 88Strain fitness (log2 ratio) -2 -1 0 1at 86.777 kb on + strandat 86.778 kb on - strandat 86.778 kb on - strandat 86.778 kb on - strandat 86.963 kb on + strandat 86.963 kb on + strandat 86.963 kb on + strandat 86.963 kb on + strandat 86.964 kb on - strandat 86.964 kb on - strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.968 kb on + strandat 86.969 kb on - strandat 86.969 kb on - strandat 86.969 kb on - strandat 86.969 kb on - strandat 86.969 kb on - strandat 86.969 kb on - strandat 86.969 kb on - strandat 86.969 kb on - strandat 86.969 kb on - strandat 86.969 kb on - strandat 86.969 kb on - strandat 86.969 kb on - strandat 86.998 kb on + strandat 86.998 kb on + strandat 86.998 kb on + strandat 86.998 kb on + strandat 86.999 kb on - strandat 86.999 kb on - strandat 87.117 kb on + strandat 87.117 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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86,777 + -0.8
86,778 - +0.4
86,778 - +0.1
86,778 - -1.0
86,963 + -0.2
86,963 + +0.5
86,963 + -1.4
86,963 + +0.3
86,964 - -0.6
86,964 - -0.8
86,968 + +0.2
86,968 + -1.3
86,968 + -0.8
86,968 + +0.1
86,968 + +0.2
86,968 + -1.4
86,968 + +0.2
86,968 + -1.7
86,968 + +0.5
86,968 + +0.0
86,968 + +0.2
86,968 + +1.4
86,968 + +0.5
86,968 + -1.8
86,968 + -0.6
86,969 - -0.2
86,969 - -0.8
86,969 - +0.2
86,969 - -0.7
86,969 - -1.4
86,969 - -1.0
86,969 - -1.6
86,969 - -0.3
86,969 - -1.7
86,969 - +0.4
86,969 - -0.5
86,969 - -0.5
86,998 + -0.5
86,998 + +1.1
86,998 + +0.4
86,998 + -0.1
86,999 - -0.2
86,999 - +1.2
87,117 + -1.9
87,117 + -0.4

Or see this region's nucleotide sequence