Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00018 and MPMX19_00019 are separated by 105 nucleotides MPMX19_00019 and MPMX19_00020 are separated by 76 nucleotides MPMX19_00020 and MPMX19_00021 are separated by 112 nucleotides MPMX19_00021 and MPMX19_00022 are separated by 50 nucleotides
MPMX19_00018: MPMX19_00018 - hypothetical protein, at 23,847 to 25,160
_00018
MPMX19_00019: MPMX19_00019 - hypothetical protein, at 25,266 to 25,532
_00019
MPMX19_00020: MPMX19_00020 - hypothetical protein, at 25,609 to 25,728
_00020
MPMX19_00021: MPMX19_00021 - hypothetical protein, at 25,841 to 26,521
_00021
MPMX19_00022: MPMX19_00022 - hypothetical protein, at 26,572 to 27,663
_00022
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1 at 25.002 kb on + strand, within MPMX19_00018 at 25.002 kb on + strand, within MPMX19_00018 at 25.003 kb on - strand, within MPMX19_00018 at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.130 kb on + strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.131 kb on - strand at 25.158 kb on + strand at 25.214 kb on + strand at 25.214 kb on + strand at 25.214 kb on + strand at 25.214 kb on + strand at 25.214 kb on + strand at 25.215 kb on - strand at 25.215 kb on - strand at 25.215 kb on - strand at 25.215 kb on - strand at 25.215 kb on - strand at 25.259 kb on - strand at 25.350 kb on - strand, within MPMX19_00019 at 25.597 kb on + strand at 25.597 kb on + strand at 25.598 kb on - strand at 25.598 kb on - strand at 25.682 kb on + strand, within MPMX19_00020 at 25.683 kb on - strand, within MPMX19_00020 at 25.683 kb on - strand, within MPMX19_00020 at 25.683 kb on - strand, within MPMX19_00020 at 25.802 kb on + strand at 25.803 kb on - strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.858 kb on + strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 25.859 kb on - strand at 26.049 kb on - strand, within MPMX19_00021 at 26.049 kb on - strand, within MPMX19_00021 at 26.049 kb on - strand, within MPMX19_00021 at 26.049 kb on - strand, within MPMX19_00021 at 26.052 kb on - strand, within MPMX19_00021 at 26.052 kb on - strand, within MPMX19_00021 at 26.052 kb on - strand, within MPMX19_00021 at 26.052 kb on - strand, within MPMX19_00021 at 26.432 kb on + strand, within MPMX19_00021 at 26.432 kb on + strand, within MPMX19_00021 at 26.432 kb on + strand, within MPMX19_00021 at 26.432 kb on + strand, within MPMX19_00021 at 26.432 kb on + strand, within MPMX19_00021 at 26.432 kb on + strand, within MPMX19_00021 at 26.432 kb on + strand, within MPMX19_00021 at 26.432 kb on + strand, within MPMX19_00021 at 26.433 kb on - strand, within MPMX19_00021 at 26.433 kb on - strand, within MPMX19_00021 at 26.433 kb on - strand, within MPMX19_00021 at 26.433 kb on - strand, within MPMX19_00021 at 26.433 kb on - strand, within MPMX19_00021 at 26.433 kb on - strand, within MPMX19_00021 at 26.433 kb on - strand, within MPMX19_00021 at 26.434 kb on + strand, within MPMX19_00021 at 26.435 kb on - strand, within MPMX19_00021 at 26.435 kb on - strand, within MPMX19_00021 at 26.435 kb on - strand, within MPMX19_00021 at 26.435 kb on - strand, within MPMX19_00021 at 26.435 kb on - strand, within MPMX19_00021 at 26.435 kb on - strand, within MPMX19_00021 at 26.447 kb on + strand, within MPMX19_00021 at 26.447 kb on + strand, within MPMX19_00021 at 26.447 kb on + strand, within MPMX19_00021 at 26.447 kb on + strand, within MPMX19_00021 at 26.447 kb on + strand, within MPMX19_00021 at 26.447 kb on + strand, within MPMX19_00021 at 26.448 kb on - strand, within MPMX19_00021 at 26.448 kb on - strand, within MPMX19_00021 at 26.448 kb on - strand, within MPMX19_00021 at 26.448 kb on - strand, within MPMX19_00021 at 26.448 kb on - strand, within MPMX19_00021 at 26.448 kb on - strand, within MPMX19_00021 at 26.448 kb on - strand, within MPMX19_00021 at 26.702 kb on + strand, within MPMX19_00022 at 26.703 kb on - strand, within MPMX19_00022 at 26.703 kb on - strand, within MPMX19_00022 at 26.703 kb on - strand, within MPMX19_00022 at 26.744 kb on + strand, within MPMX19_00022 at 26.745 kb on - strand, within MPMX19_00022 at 26.745 kb on - strand, within MPMX19_00022 at 26.745 kb on - strand, within MPMX19_00022 at 26.745 kb on - strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.867 kb on + strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 26.868 kb on - strand, within MPMX19_00022 at 27.236 kb on + strand, within MPMX19_00022 at 27.236 kb on + strand, within MPMX19_00022 at 27.236 kb on + strand, within MPMX19_00022 at 27.236 kb on + strand, within MPMX19_00022 at 27.237 kb on - strand, within MPMX19_00022 at 27.278 kb on + strand, within MPMX19_00022 at 27.278 kb on + strand, within MPMX19_00022 at 27.278 kb on + strand, within MPMX19_00022 at 27.278 kb on + strand, within MPMX19_00022 at 27.278 kb on + strand, within MPMX19_00022 at 27.278 kb on + strand, within MPMX19_00022 at 27.278 kb on + strand, within MPMX19_00022 at 27.278 kb on + strand, within MPMX19_00022 at 27.278 kb on + strand, within MPMX19_00022 at 27.278 kb on + strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.279 kb on - strand, within MPMX19_00022 at 27.374 kb on + strand, within MPMX19_00022 at 27.374 kb on + strand, within MPMX19_00022 at 27.375 kb on - strand, within MPMX19_00022 at 27.375 kb on - strand, within MPMX19_00022 at 27.401 kb on + strand, within MPMX19_00022 at 27.401 kb on + strand, within MPMX19_00022 at 27.401 kb on + strand, within MPMX19_00022 at 27.401 kb on + strand, within MPMX19_00022 at 27.401 kb on + strand, within MPMX19_00022 at 27.401 kb on + strand, within MPMX19_00022 at 27.402 kb on - strand, within MPMX19_00022 at 27.402 kb on - strand, within MPMX19_00022 at 27.402 kb on - strand, within MPMX19_00022 at 27.402 kb on - strand, within MPMX19_00022 at 27.402 kb on - strand, within MPMX19_00022 at 27.402 kb on - strand, within MPMX19_00022 at 27.402 kb on - strand, within MPMX19_00022 at 27.402 kb on - strand, within MPMX19_00022 at 27.402 kb on - strand, within MPMX19_00022 at 27.402 kb on - strand, within MPMX19_00022 at 27.402 kb on - strand, within MPMX19_00022 at 27.428 kb on + strand, within MPMX19_00022 at 27.428 kb on + strand, within MPMX19_00022 at 27.429 kb on - strand, within MPMX19_00022
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 25,002 + MPMX19_00018 0.88 +0.6 25,002 + MPMX19_00018 0.88 -0.2 25,003 - MPMX19_00018 0.88 -0.0 25,130 + -0.2 25,130 + -0.2 25,130 + +0.1 25,130 + -1.6 25,130 + +0.1 25,130 + +0.1 25,130 + -0.6 25,130 + -1.3 25,130 + +0.6 25,130 + -0.3 25,131 - +0.2 25,131 - +0.4 25,131 - +0.5 25,131 - -0.3 25,131 - -0.2 25,131 - +0.8 25,131 - +0.7 25,131 - +1.2 25,131 - +0.9 25,131 - -0.2 25,131 - +0.9 25,158 + -0.8 25,214 + +1.2 25,214 + -0.7 25,214 + +0.2 25,214 + +0.4 25,214 + -0.4 25,215 - -1.8 25,215 - -0.8 25,215 - -1.5 25,215 - +0.5 25,215 - +0.8 25,259 - +0.1 25,350 - MPMX19_00019 0.31 +0.6 25,597 + +0.2 25,597 + -0.0 25,598 - -1.2 25,598 - +1.1 25,682 + MPMX19_00020 0.61 -1.5 25,683 - MPMX19_00020 0.62 -1.0 25,683 - MPMX19_00020 0.62 +1.2 25,683 - MPMX19_00020 0.62 +1.1 25,802 + -0.3 25,803 - +0.1 25,858 + +0.8 25,858 + -1.5 25,858 + +1.1 25,858 + -0.2 25,858 + +1.2 25,858 + +0.1 25,858 + -0.1 25,858 + -1.4 25,858 + +0.2 25,858 + +0.6 25,858 + +0.6 25,858 + -0.7 25,858 + +0.6 25,858 + +0.7 25,859 - -1.7 25,859 - +1.1 25,859 - +0.1 25,859 - +0.5 25,859 - -0.5 25,859 - -0.5 25,859 - -0.6 25,859 - -0.1 25,859 - -1.2 25,859 - +0.3 25,859 - -0.8 25,859 - -1.6 25,859 - +0.7 25,859 - +0.2 26,049 - MPMX19_00021 0.31 +0.6 26,049 - MPMX19_00021 0.31 -0.3 26,049 - MPMX19_00021 0.31 -0.4 26,049 - MPMX19_00021 0.31 -0.3 26,052 - MPMX19_00021 0.31 -0.1 26,052 - MPMX19_00021 0.31 +0.9 26,052 - MPMX19_00021 0.31 -1.0 26,052 - MPMX19_00021 0.31 -0.1 26,432 + MPMX19_00021 0.87 +0.8 26,432 + MPMX19_00021 0.87 +0.9 26,432 + MPMX19_00021 0.87 -0.5 26,432 + MPMX19_00021 0.87 -0.0 26,432 + MPMX19_00021 0.87 -0.8 26,432 + MPMX19_00021 0.87 +0.6 26,432 + MPMX19_00021 0.87 +0.1 26,432 + MPMX19_00021 0.87 -2.7 26,433 - MPMX19_00021 0.87 +0.0 26,433 - MPMX19_00021 0.87 -0.8 26,433 - MPMX19_00021 0.87 +0.8 26,433 - MPMX19_00021 0.87 +1.0 26,433 - MPMX19_00021 0.87 +0.7 26,433 - MPMX19_00021 0.87 +0.2 26,433 - MPMX19_00021 0.87 +0.6 26,434 + MPMX19_00021 0.87 +0.4 26,435 - MPMX19_00021 0.87 +0.0 26,435 - MPMX19_00021 0.87 -0.2 26,435 - MPMX19_00021 0.87 +0.5 26,435 - MPMX19_00021 0.87 -1.1 26,435 - MPMX19_00021 0.87 -1.4 26,435 - MPMX19_00021 0.87 -0.1 26,447 + MPMX19_00021 0.89 -0.8 26,447 + MPMX19_00021 0.89 -0.7 26,447 + MPMX19_00021 0.89 -0.7 26,447 + MPMX19_00021 0.89 -0.2 26,447 + MPMX19_00021 0.89 -0.0 26,447 + MPMX19_00021 0.89 +0.7 26,448 - MPMX19_00021 0.89 -0.3 26,448 - MPMX19_00021 0.89 -1.5 26,448 - MPMX19_00021 0.89 -1.1 26,448 - MPMX19_00021 0.89 -1.2 26,448 - MPMX19_00021 0.89 +0.6 26,448 - MPMX19_00021 0.89 -1.3 26,448 - MPMX19_00021 0.89 -0.5 26,702 + MPMX19_00022 0.12 -1.4 26,703 - MPMX19_00022 0.12 -1.1 26,703 - MPMX19_00022 0.12 +0.8 26,703 - MPMX19_00022 0.12 +0.1 26,744 + MPMX19_00022 0.16 +0.4 26,745 - MPMX19_00022 0.16 +0.6 26,745 - MPMX19_00022 0.16 +0.4 26,745 - MPMX19_00022 0.16 +0.0 26,745 - MPMX19_00022 0.16 -0.5 26,867 + MPMX19_00022 0.27 -0.3 26,867 + MPMX19_00022 0.27 +1.0 26,867 + MPMX19_00022 0.27 +0.9 26,867 + MPMX19_00022 0.27 -0.1 26,867 + MPMX19_00022 0.27 -0.0 26,867 + MPMX19_00022 0.27 +0.6 26,867 + MPMX19_00022 0.27 +0.7 26,867 + MPMX19_00022 0.27 -0.4 26,867 + MPMX19_00022 0.27 +0.2 26,867 + MPMX19_00022 0.27 +0.8 26,867 + MPMX19_00022 0.27 -0.9 26,867 + MPMX19_00022 0.27 +1.0 26,867 + MPMX19_00022 0.27 -1.2 26,867 + MPMX19_00022 0.27 -0.0 26,867 + MPMX19_00022 0.27 -0.0 26,867 + MPMX19_00022 0.27 -1.2 26,867 + MPMX19_00022 0.27 -1.0 26,867 + MPMX19_00022 0.27 -1.1 26,867 + MPMX19_00022 0.27 -0.2 26,867 + MPMX19_00022 0.27 +0.2 26,867 + MPMX19_00022 0.27 -1.6 26,867 + MPMX19_00022 0.27 -0.7 26,868 - MPMX19_00022 0.27 -0.2 26,868 - MPMX19_00022 0.27 -0.6 26,868 - MPMX19_00022 0.27 -1.7 26,868 - MPMX19_00022 0.27 +1.5 26,868 - MPMX19_00022 0.27 +0.9 26,868 - MPMX19_00022 0.27 -0.9 26,868 - MPMX19_00022 0.27 +0.0 26,868 - MPMX19_00022 0.27 +1.0 26,868 - MPMX19_00022 0.27 +0.5 26,868 - MPMX19_00022 0.27 +1.1 26,868 - MPMX19_00022 0.27 -0.0 26,868 - MPMX19_00022 0.27 -1.9 26,868 - MPMX19_00022 0.27 +0.6 26,868 - MPMX19_00022 0.27 +0.9 26,868 - MPMX19_00022 0.27 +1.3 26,868 - MPMX19_00022 0.27 +0.3 26,868 - MPMX19_00022 0.27 -0.4 26,868 - MPMX19_00022 0.27 -1.0 26,868 - MPMX19_00022 0.27 -0.5 26,868 - MPMX19_00022 0.27 -2.2 26,868 - MPMX19_00022 0.27 +0.9 26,868 - MPMX19_00022 0.27 -0.9 26,868 - MPMX19_00022 0.27 -0.1 26,868 - MPMX19_00022 0.27 -0.1 26,868 - MPMX19_00022 0.27 +0.6 26,868 - MPMX19_00022 0.27 +1.4 26,868 - MPMX19_00022 0.27 -0.3 27,236 + MPMX19_00022 0.61 +0.5 27,236 + MPMX19_00022 0.61 +1.3 27,236 + MPMX19_00022 0.61 -2.4 27,236 + MPMX19_00022 0.61 -0.7 27,237 - MPMX19_00022 0.61 -1.0 27,278 + MPMX19_00022 0.65 +1.1 27,278 + MPMX19_00022 0.65 -0.0 27,278 + MPMX19_00022 0.65 -0.5 27,278 + MPMX19_00022 0.65 +0.4 27,278 + MPMX19_00022 0.65 +1.2 27,278 + MPMX19_00022 0.65 -2.2 27,278 + MPMX19_00022 0.65 -0.5 27,278 + MPMX19_00022 0.65 -1.2 27,278 + MPMX19_00022 0.65 -1.1 27,278 + MPMX19_00022 0.65 -2.0 27,279 - MPMX19_00022 0.65 -0.5 27,279 - MPMX19_00022 0.65 -0.0 27,279 - MPMX19_00022 0.65 -0.4 27,279 - MPMX19_00022 0.65 +0.4 27,279 - MPMX19_00022 0.65 -0.4 27,279 - MPMX19_00022 0.65 -0.2 27,279 - MPMX19_00022 0.65 +0.2 27,279 - MPMX19_00022 0.65 -1.6 27,279 - MPMX19_00022 0.65 -0.1 27,279 - MPMX19_00022 0.65 -1.7 27,279 - MPMX19_00022 0.65 +0.7 27,279 - MPMX19_00022 0.65 -0.9 27,279 - MPMX19_00022 0.65 -1.0 27,279 - MPMX19_00022 0.65 -0.5 27,374 + MPMX19_00022 0.73 -0.4 27,374 + MPMX19_00022 0.73 -0.1 27,375 - MPMX19_00022 0.74 -0.1 27,375 - MPMX19_00022 0.74 -1.0 27,401 + MPMX19_00022 0.76 -0.5 27,401 + MPMX19_00022 0.76 -1.4 27,401 + MPMX19_00022 0.76 -0.8 27,401 + MPMX19_00022 0.76 -2.1 27,401 + MPMX19_00022 0.76 -0.1 27,401 + MPMX19_00022 0.76 -0.5 27,402 - MPMX19_00022 0.76 -2.1 27,402 - MPMX19_00022 0.76 -2.3 27,402 - MPMX19_00022 0.76 -1.8 27,402 - MPMX19_00022 0.76 +1.2 27,402 - MPMX19_00022 0.76 +0.2 27,402 - MPMX19_00022 0.76 +1.4 27,402 - MPMX19_00022 0.76 -2.4 27,402 - MPMX19_00022 0.76 +0.1 27,402 - MPMX19_00022 0.76 +1.5 27,402 - MPMX19_00022 0.76 -1.5 27,402 - MPMX19_00022 0.76 -2.3 27,428 + MPMX19_00022 0.78 -0.2 27,428 + MPMX19_00022 0.78 +0.8 27,429 - MPMX19_00022 0.78 -0.3
Or see this region's nucleotide sequence