Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS26000

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
9,506	+				-1.8
9,574	+		LU632_RS25990	0.19	-0.9
9,574	+		LU632_RS25990	0.19	-1.1
9,595	+		LU632_RS25990	0.24	-2.1
9,595	+		LU632_RS25990	0.24	-0.5
9,595	+		LU632_RS25990	0.24	+3.1
9,595	+		LU632_RS25990	0.24	+4.7
9,595	+		LU632_RS25990	0.24	-1.1
9,596	-		LU632_RS25990	0.25	-1.4
9,596	-		LU632_RS25990	0.25	-0.3
9,596	-		LU632_RS25990	0.25	-3.5
9,596	-		LU632_RS25990	0.25	-1.1
9,596	-		LU632_RS25990	0.25	-0.4
9,596	-		LU632_RS25990	0.25	+0.5
9,596	-		LU632_RS25990	0.25	+4.9
9,596	-		LU632_RS25990	0.25	-0.9
9,601	+		LU632_RS25990	0.26	+0.1
9,602	-		LU632_RS25990	0.26	-1.7
9,628	+		LU632_RS25990	0.32	-3.1
9,628	+		LU632_RS25990	0.32	-4.5
9,699	+		LU632_RS25990	0.50	-0.5
9,751	+		LU632_RS25990	0.62	+0.5
9,751	+		LU632_RS25990	0.62	+0.8
9,751	+		LU632_RS25990	0.62	-0.0
9,752	-		LU632_RS25990	0.62	+2.2
9,752	-		LU632_RS25990	0.62	+0.8
9,752	-		LU632_RS25990	0.62	-1.0
9,752	-		LU632_RS25990	0.62	+0.5
9,752	-		LU632_RS25990	0.62	+0.0
9,754	+		LU632_RS25990	0.63	-0.1
9,754	+		LU632_RS25990	0.63	-0.7
9,790	+		LU632_RS25990	0.71	-0.9
9,828	-		LU632_RS25990	0.81	-2.0
9,895	+				-1.0
9,899	-				-0.6
9,899	-				+2.1
9,910	+				-2.7
9,910	+				-4.7
9,910	+				+0.7
9,910	+				-0.0
9,911	-				-0.8
9,911	-				-0.6
9,911	-				+1.8
9,922	+				+1.7
9,923	-				-1.1
9,923	-				-3.9
9,928	+				+2.8
9,929	-				-2.3
10,012	-		LU632_RS25995	0.22	+2.1
10,112	+		LU632_RS25995	0.44	-0.6
10,123	+		LU632_RS25995	0.47	-3.5
10,124	-		LU632_RS25995	0.47	-2.5
10,124	-		LU632_RS25995	0.47	+0.4
10,132	-		LU632_RS25995	0.49	-1.0
10,135	+		LU632_RS25995	0.49	+0.8
10,136	-		LU632_RS25995	0.50	-1.3
10,158	+		LU632_RS25995	0.55	-1.0
10,158	+		LU632_RS25995	0.55	-2.3
10,158	+		LU632_RS25995	0.55	-0.3
10,158	+		LU632_RS25995	0.55	+3.3
10,254	+		LU632_RS25995	0.76	+1.5
10,254	+		LU632_RS25995	0.76	-1.0
10,317	+				-2.1
10,318	-				+0.2
10,318	-				-1.2
10,344	+				-1.6
10,344	+				-0.2
10,344	+				-4.6
10,344	+				-0.2
10,344	+				+0.2
10,345	-				+1.3
10,345	-				+1.0
10,345	-				-3.8
10,345	-				+0.5
10,345	-				+1.2
10,346	+				-2.0
10,346	+				+0.1
10,346	+				-1.9
10,346	+				-2.1
10,347	-				-0.2
10,347	-				+1.4
10,350	+				+2.4
10,350	+				-0.2
10,350	+				-1.3
10,350	+				+0.8
10,350	+				-0.1
10,351	-				+0.8
10,351	-				+0.2
10,450	+				+0.4
10,450	+				-1.3
10,450	+				-2.8
10,450	+				+1.0
10,498	-				+0.5
10,503	+				-0.3
10,503	+				-0.3
10,503	+				+0.4
10,503	+				+0.2
10,503	+				-3.0
10,503	+				+2.3
10,503	+				+0.0
10,503	+				-2.7
10,503	+				-1.3
10,503	+				+2.3
10,503	+				-0.7
10,503	+				-4.4
10,504	-				-2.2
10,504	-				+0.8
10,504	-				+0.7
10,504	-				-0.3
10,506	+				-5.0
10,614	-		LU632_RS26000	0.16	-2.6
10,625	+		LU632_RS26000	0.17	-2.7
10,633	+		LU632_RS26000	0.18	+0.6
10,674	+		LU632_RS26000	0.21	+0.5
10,674	+		LU632_RS26000	0.21	-4.5
10,674	+		LU632_RS26000	0.21	-1.3
10,674	+		LU632_RS26000	0.21	-2.2
10,674	+		LU632_RS26000	0.21	-2.2
10,674	+		LU632_RS26000	0.21	-1.7
10,674	+		LU632_RS26000	0.21	+0.9
10,674	+		LU632_RS26000	0.21	-3.0
10,674	+		LU632_RS26000	0.21	+0.2
10,675	-		LU632_RS26000	0.21	+2.7
10,675	-		LU632_RS26000	0.21	-2.1
10,675	-		LU632_RS26000	0.21	+1.4
10,684	+		LU632_RS26000	0.21	-1.0
10,685	-		LU632_RS26000	0.21	-0.2
10,686	+		LU632_RS26000	0.21	+0.3
10,686	+		LU632_RS26000	0.21	+0.5
10,686	+		LU632_RS26000	0.21	-4.4
10,686	+		LU632_RS26000	0.21	-2.6
10,686	+		LU632_RS26000	0.21	+1.7
10,686	+		LU632_RS26000	0.21	-1.1
10,687	-		LU632_RS26000	0.21	-0.4
10,687	-		LU632_RS26000	0.21	-1.8
10,687	-		LU632_RS26000	0.21	+1.3
10,687	-		LU632_RS26000	0.21	-0.7
10,687	-		LU632_RS26000	0.21	+0.9
10,705	-		LU632_RS26000	0.23	-1.5
10,705	-		LU632_RS26000	0.23	-3.6
10,705	-		LU632_RS26000	0.23	-4.1
10,774	+		LU632_RS26000	0.27	-3.0
10,783	+		LU632_RS26000	0.28	-0.1
10,794	+		LU632_RS26000	0.29	-0.7
10,795	-		LU632_RS26000	0.29	-0.4
10,795	-		LU632_RS26000	0.29	+1.4
10,795	-		LU632_RS26000	0.29	-4.4
10,928	-		LU632_RS26000	0.38	-0.7
10,977	+		LU632_RS26000	0.41	-1.8
10,977	+		LU632_RS26000	0.41	-2.7
10,978	-		LU632_RS26000	0.41	-3.8
10,998	+		LU632_RS26000	0.42	-1.1
10,999	-		LU632_RS26000	0.43	-3.7
10,999	-		LU632_RS26000	0.43	-0.5
11,026	+		LU632_RS26000	0.44	-3.5
11,048	+		LU632_RS26000	0.46	+1.7
11,056	+		LU632_RS26000	0.46	-2.1
11,109	+		LU632_RS26000	0.50	-1.9
11,109	+		LU632_RS26000	0.50	+1.2
11,109	+		LU632_RS26000	0.50	-0.8
11,109	+		LU632_RS26000	0.50	+0.3
11,109	+		LU632_RS26000	0.50	-0.3
11,109	+		LU632_RS26000	0.50	+1.0
11,110	-		LU632_RS26000	0.50	-0.0
11,110	-		LU632_RS26000	0.50	-0.7
11,110	-		LU632_RS26000	0.50	+1.7
11,110	-		LU632_RS26000	0.50	+2.0
11,110	-		LU632_RS26000	0.50	-0.8
11,110	-		LU632_RS26000	0.50	+0.5
11,110	-		LU632_RS26000	0.50	-1.1
11,110	-		LU632_RS26000	0.50	-0.5
11,110	-		LU632_RS26000	0.50	-3.1
11,110	-		LU632_RS26000	0.50	+1.0
11,110	-		LU632_RS26000	0.50	-1.5
11,118	-		LU632_RS26000	0.51	+1.5
11,166	+		LU632_RS26000	0.54	+1.4
11,167	-		LU632_RS26000	0.54	+1.0
11,494	+		LU632_RS26000	0.76	-1.6
11,604	+		LU632_RS26000	0.83	+1.7
11,604	+		LU632_RS26000	0.83	-0.5
11,604	+		LU632_RS26000	0.83	-4.3
11,605	-		LU632_RS26000	0.84	+5.1
11,605	-		LU632_RS26000	0.84	-3.5
11,605	-		LU632_RS26000	0.84	-2.0
11,634	+		LU632_RS26000	0.85	+0.1
11,635	-		LU632_RS26000	0.86	-0.8
11,635	-		LU632_RS26000	0.86	-2.3
11,635	-		LU632_RS26000	0.86	-4.4
11,638	-		LU632_RS26000	0.86	-4.0
11,656	-		LU632_RS26000	0.87	+3.6
11,656	-		LU632_RS26000	0.87	+1.7
11,706	+				-1.9
11,848	+				-1.7
11,848	+				+3.4
11,848	+				-0.3
11,848	+				+3.3
11,849	-				-3.5
11,849	-				+0.3
11,849	-				+1.2
11,849	-				+2.9
11,849	-				-0.7
11,852	+				+2.9
11,852	+				+1.0
11,852	+				-1.1
11,852	+				-1.1
11,852	+				-1.7
11,853	-				-1.3
11,853	-				-0.7
11,853	-				-0.9
11,853	-				-3.5
11,853	-				+0.2
11,853	-				+0.4
11,853	-				-0.2
11,853	-				-1.1
11,882	-				-0.0
11,900	+				-3.8
11,900	+				+0.3
11,904	+				+1.1
11,905	-				+0.9
11,934	+		LU632_RS26005	0.15	+0.9
11,937	+		LU632_RS26005	0.16	-1.0
11,938	-		LU632_RS26005	0.16	+4.4
11,964	+		LU632_RS26005	0.20	+0.5
11,965	-		LU632_RS26005	0.21	-2.0
12,013	-		LU632_RS26005	0.29	-1.5
12,037	-		LU632_RS26005	0.34	-1.2
12,099	-		LU632_RS26005	0.45	-3.9
12,099	-		LU632_RS26005	0.45	-1.5
12,171	+		LU632_RS26005	0.58	-3.1
12,195	+		LU632_RS26005	0.62	+0.7
12,274	+		LU632_RS26005	0.77	-2.7
12,377	+				+4.5
12,377	+				-2.7
12,434	-				-1.8
12,434	-				+1.7
12,461	+		LU632_RS26010	0.15	-4.0
12,461	+		LU632_RS26010	0.15	-2.7
12,461	+		LU632_RS26010	0.15	-2.0
12,462	-		LU632_RS26010	0.15	-2.4
12,462	-		LU632_RS26010	0.15	-1.7
12,466	+		LU632_RS26010	0.16	-1.1
12,466	+		LU632_RS26010	0.16	-1.7
12,467	-		LU632_RS26010	0.17	-0.9
12,488	+		LU632_RS26010	0.22	-3.7
12,488	+		LU632_RS26010	0.22	-2.4
12,489	-		LU632_RS26010	0.23	-2.9
12,490	+		LU632_RS26010	0.23	-3.0
12,516	-		LU632_RS26010	0.30	-1.2
12,533	+		LU632_RS26010	0.34	-2.9
12,533	+		LU632_RS26010	0.34	-0.7
12,534	-		LU632_RS26010	0.35	-0.0
12,651	+		LU632_RS26010	0.66	-1.8
12,665	+		LU632_RS26010	0.70	-0.9
12,665	+		LU632_RS26010	0.70	+0.1
12,665	+		LU632_RS26010	0.70	-3.8
12,665	+		LU632_RS26010	0.70	-1.9
12,666	-		LU632_RS26010	0.70	-2.6
12,666	-		LU632_RS26010	0.70	+1.7
12,666	-		LU632_RS26010	0.70	-2.1
12,666	-		LU632_RS26010	0.70	-0.9
12,666	-		LU632_RS26010	0.70	-0.8
12,666	-		LU632_RS26010	0.70	-1.3
12,666	-		LU632_RS26010	0.70	-4.4
12,708	+		LU632_RS26010	0.81	-3.5
12,708	+		LU632_RS26010	0.81	+1.2
12,795	+				-1.9
12,795	+				-0.0
12,796	-				-1.9
12,796	-				-1.1
12,796	-				+5.4
12,796	-				-1.2
12,796	-				-1.7
12,796	-				-1.0
12,796	-				-1.4
12,796	-				-1.5
12,796	-				+1.9
12,813	+				-3.6