Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt traB and LU632_RS25820 are separated by 9 nucleotides LU632_RS25820 and LU632_RS25825 are separated by 11 nucleotides LU632_RS25825 and LU632_RS25830 are separated by 196 nucleotides LU632_RS25830 and LU632_RS25835 are separated by 222 nucleotides
LU632_RS25815: traB - F-type conjugal transfer pilus assembly protein TraB, at 13,576 to 14,937
traB
LU632_RS25820: LU632_RS25820 - hypothetical protein, at 14,947 to 15,108
_RS25820
LU632_RS25825: LU632_RS25825 - hypothetical protein, at 15,120 to 15,368
_RS25825
LU632_RS25830: LU632_RS25830 - hypothetical protein, at 15,565 to 15,705
_RS25830
LU632_RS25835: LU632_RS25835 - TraV family lipoprotein, at 15,928 to 16,308
_RS25835
Position (kb) 14
15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 13.983 kb on + strand, within traB at 14.035 kb on - strand, within traB at 14.078 kb on + strand, within traB at 14.079 kb on - strand, within traB at 14.159 kb on - strand, within traB at 14.159 kb on - strand, within traB at 14.161 kb on - strand, within traB at 14.239 kb on - strand, within traB at 14.239 kb on - strand, within traB at 14.239 kb on - strand, within traB at 14.255 kb on + strand, within traB at 14.268 kb on + strand, within traB at 14.269 kb on - strand, within traB at 14.269 kb on - strand, within traB at 14.274 kb on - strand, within traB at 14.274 kb on - strand, within traB at 14.283 kb on + strand, within traB at 14.283 kb on + strand, within traB at 14.284 kb on - strand, within traB at 14.342 kb on + strand, within traB at 14.342 kb on + strand, within traB at 14.343 kb on - strand, within traB at 14.343 kb on - strand, within traB at 14.343 kb on - strand, within traB at 14.343 kb on - strand, within traB at 14.343 kb on - strand, within traB at 14.343 kb on - strand, within traB at 14.385 kb on + strand, within traB at 14.385 kb on + strand, within traB at 14.386 kb on - strand, within traB at 14.386 kb on - strand, within traB at 14.386 kb on - strand, within traB at 14.419 kb on - strand, within traB at 14.455 kb on - strand, within traB at 14.482 kb on - strand, within traB at 14.536 kb on - strand, within traB at 14.616 kb on - strand, within traB at 14.656 kb on + strand, within traB at 14.657 kb on - strand, within traB at 14.657 kb on - strand, within traB at 14.657 kb on - strand, within traB at 14.659 kb on + strand, within traB at 14.659 kb on + strand, within traB at 14.659 kb on + strand, within traB at 14.660 kb on - strand, within traB at 14.660 kb on - strand, within traB at 14.661 kb on + strand, within traB at 14.661 kb on + strand, within traB at 14.662 kb on - strand, within traB at 14.731 kb on - strand, within traB at 14.769 kb on - strand, within traB at 14.854 kb on - strand at 14.928 kb on + strand at 14.932 kb on - strand at 14.932 kb on - strand at 14.991 kb on - strand, within LU632_RS25820 at 15.010 kb on - strand, within LU632_RS25820 at 15.133 kb on + strand at 15.137 kb on + strand at 15.137 kb on + strand at 15.139 kb on + strand at 15.140 kb on - strand at 15.208 kb on + strand, within LU632_RS25825 at 15.209 kb on - strand, within LU632_RS25825 at 15.209 kb on - strand, within LU632_RS25825 at 15.209 kb on - strand, within LU632_RS25825 at 15.211 kb on + strand, within LU632_RS25825 at 15.220 kb on + strand, within LU632_RS25825 at 15.220 kb on + strand, within LU632_RS25825 at 15.220 kb on + strand, within LU632_RS25825 at 15.221 kb on - strand, within LU632_RS25825 at 15.381 kb on + strand at 15.394 kb on - strand at 15.438 kb on + strand at 15.531 kb on + strand at 15.644 kb on + strand, within LU632_RS25830 at 15.645 kb on - strand, within LU632_RS25830 at 15.655 kb on - strand, within LU632_RS25830 at 15.675 kb on - strand, within LU632_RS25830 at 15.830 kb on - strand at 15.831 kb on + strand at 15.831 kb on + strand at 15.832 kb on - strand at 15.832 kb on - strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.833 kb on + strand at 15.834 kb on - strand at 15.834 kb on - strand at 15.834 kb on - strand at 15.835 kb on + strand at 15.835 kb on + strand at 15.835 kb on + strand at 15.835 kb on + strand at 15.835 kb on + strand at 15.836 kb on - strand at 15.836 kb on - strand at 15.836 kb on - strand at 15.836 kb on - strand at 15.836 kb on - strand at 15.859 kb on - strand at 15.859 kb on - strand at 15.919 kb on - strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.920 kb on + strand at 15.921 kb on - strand at 15.922 kb on + strand at 15.922 kb on + strand at 15.922 kb on + strand at 15.923 kb on - strand at 15.928 kb on - strand at 15.933 kb on + strand at 16.008 kb on + strand, within LU632_RS25835 at 16.008 kb on + strand, within LU632_RS25835 at 16.008 kb on + strand, within LU632_RS25835 at 16.008 kb on + strand, within LU632_RS25835 at 16.008 kb on + strand, within LU632_RS25835 at 16.009 kb on - strand, within LU632_RS25835 at 16.032 kb on + strand, within LU632_RS25835 at 16.032 kb on + strand, within LU632_RS25835 at 16.033 kb on - strand, within LU632_RS25835
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX) remove 13,983 + traB LU632_RS25815 0.30 +1.3 14,035 - traB LU632_RS25815 0.34 -0.5 14,078 + traB LU632_RS25815 0.37 +1.6 14,079 - traB LU632_RS25815 0.37 +0.6 14,159 - traB LU632_RS25815 0.43 +0.6 14,159 - traB LU632_RS25815 0.43 +0.4 14,161 - traB LU632_RS25815 0.43 +5.2 14,239 - traB LU632_RS25815 0.49 -0.2 14,239 - traB LU632_RS25815 0.49 -0.9 14,239 - traB LU632_RS25815 0.49 -0.3 14,255 + traB LU632_RS25815 0.50 -0.0 14,268 + traB LU632_RS25815 0.51 +1.9 14,269 - traB LU632_RS25815 0.51 +1.3 14,269 - traB LU632_RS25815 0.51 +0.2 14,274 - traB LU632_RS25815 0.51 +2.4 14,274 - traB LU632_RS25815 0.51 +0.2 14,283 + traB LU632_RS25815 0.52 -0.7 14,283 + traB LU632_RS25815 0.52 -0.3 14,284 - traB LU632_RS25815 0.52 -1.3 14,342 + traB LU632_RS25815 0.56 +1.1 14,342 + traB LU632_RS25815 0.56 -1.4 14,343 - traB LU632_RS25815 0.56 +0.6 14,343 - traB LU632_RS25815 0.56 -0.7 14,343 - traB LU632_RS25815 0.56 -2.4 14,343 - traB LU632_RS25815 0.56 +1.4 14,343 - traB LU632_RS25815 0.56 -3.4 14,343 - traB LU632_RS25815 0.56 -1.0 14,385 + traB LU632_RS25815 0.59 -3.3 14,385 + traB LU632_RS25815 0.59 -0.1 14,386 - traB LU632_RS25815 0.59 +0.8 14,386 - traB LU632_RS25815 0.59 +2.1 14,386 - traB LU632_RS25815 0.59 -1.9 14,419 - traB LU632_RS25815 0.62 +1.7 14,455 - traB LU632_RS25815 0.65 +1.0 14,482 - traB LU632_RS25815 0.67 -0.4 14,536 - traB LU632_RS25815 0.70 -2.4 14,616 - traB LU632_RS25815 0.76 -1.0 14,656 + traB LU632_RS25815 0.79 -1.0 14,657 - traB LU632_RS25815 0.79 -1.6 14,657 - traB LU632_RS25815 0.79 -1.1 14,657 - traB LU632_RS25815 0.79 +0.8 14,659 + traB LU632_RS25815 0.80 -2.0 14,659 + traB LU632_RS25815 0.80 +2.8 14,659 + traB LU632_RS25815 0.80 -2.4 14,660 - traB LU632_RS25815 0.80 -1.5 14,660 - traB LU632_RS25815 0.80 +0.3 14,661 + traB LU632_RS25815 0.80 -2.6 14,661 + traB LU632_RS25815 0.80 -2.0 14,662 - traB LU632_RS25815 0.80 -2.0 14,731 - traB LU632_RS25815 0.85 +0.2 14,769 - traB LU632_RS25815 0.88 -0.7 14,854 - +0.7 14,928 + +3.3 14,932 - -2.2 14,932 - +1.6 14,991 - LU632_RS25820 0.27 -2.7 15,010 - LU632_RS25820 0.39 -0.3 15,133 + +0.3 15,137 + -0.1 15,137 + +0.4 15,139 + +0.8 15,140 - +0.1 15,208 + LU632_RS25825 0.35 +2.3 15,209 - LU632_RS25825 0.36 -0.6 15,209 - LU632_RS25825 0.36 -1.9 15,209 - LU632_RS25825 0.36 -0.7 15,211 + LU632_RS25825 0.37 -1.0 15,220 + LU632_RS25825 0.40 -0.8 15,220 + LU632_RS25825 0.40 +1.8 15,220 + LU632_RS25825 0.40 -0.8 15,221 - LU632_RS25825 0.41 +2.8 15,381 + -1.0 15,394 - -0.3 15,438 + +1.8 15,531 + -3.8 15,644 + LU632_RS25830 0.56 +0.6 15,645 - LU632_RS25830 0.57 -1.1 15,655 - LU632_RS25830 0.64 +0.1 15,675 - LU632_RS25830 0.78 -0.8 15,830 - +0.5 15,831 + +0.7 15,831 + -2.7 15,832 - -1.0 15,832 - -0.4 15,833 + -0.0 15,833 + +0.9 15,833 + +3.0 15,833 + +2.0 15,833 + +0.2 15,833 + -3.0 15,833 + +2.4 15,833 + -3.4 15,834 - -1.0 15,834 - -2.6 15,834 - -1.4 15,835 + +0.2 15,835 + -2.7 15,835 + -1.0 15,835 + -2.6 15,835 + +0.7 15,836 - -1.1 15,836 - +0.8 15,836 - +2.4 15,836 - -1.2 15,836 - +0.6 15,859 - -1.3 15,859 - +1.7 15,919 - +1.9 15,920 + -1.0 15,920 + -3.0 15,920 + -3.2 15,921 - -0.5 15,922 + +0.2 15,922 + -2.3 15,922 + +0.3 15,923 - +2.6 15,928 - -0.3 15,933 + -1.5 16,008 + LU632_RS25835 0.21 +0.6 16,008 + LU632_RS25835 0.21 -0.0 16,008 + LU632_RS25835 0.21 +0.3 16,008 + LU632_RS25835 0.21 +0.5 16,008 + LU632_RS25835 0.21 -0.1 16,009 - LU632_RS25835 0.21 -0.3 16,032 + LU632_RS25835 0.27 -0.3 16,032 + LU632_RS25835 0.27 +0.4 16,033 - LU632_RS25835 0.28 +0.2
Or see this region's nucleotide sequence