Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25540 and LU632_RS25545 are separated by 135 nucleotides LU632_RS25545 and LU632_RS25550 are separated by 194 nucleotides LU632_RS25550 and LU632_RS25555 are separated by 3 nucleotides LU632_RS25555 and LU632_RS25560 are separated by 339 nucleotides
LU632_RS25540: LU632_RS25540 - DUF1349 domain-containing protein, at 39,739 to 40,317
_RS25540
LU632_RS25545: LU632_RS25545 - helix-turn-helix domain-containing protein, at 40,453 to 40,623
_RS25545
LU632_RS25550: LU632_RS25550 - Tn3 family transposase, at 40,818 to 41,318
_RS25550
LU632_RS25555: LU632_RS25555 - IS6 family transposase, at 41,322 to 41,429
_RS25555
LU632_RS25560: LU632_RS25560 - AAA family ATPase, at 41,769 to 42,395
_RS25560
Position (kb) 40
41
42 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 40.040 kb on + strand, within LU632_RS25540 at 40.312 kb on - strand at 40.315 kb on + strand at 40.321 kb on + strand at 40.326 kb on + strand at 40.326 kb on + strand at 40.354 kb on + strand at 40.372 kb on + strand at 40.373 kb on - strand at 40.455 kb on - strand at 40.461 kb on + strand at 40.470 kb on - strand, within LU632_RS25545 at 40.494 kb on + strand, within LU632_RS25545 at 40.665 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.696 kb on + strand at 40.696 kb on + strand at 40.696 kb on + strand at 40.697 kb on - strand at 40.713 kb on + strand at 40.713 kb on + strand at 40.719 kb on + strand at 40.719 kb on + strand at 40.719 kb on + strand at 40.720 kb on - strand at 40.730 kb on + strand at 40.760 kb on + strand at 40.761 kb on - strand at 40.768 kb on + strand at 40.768 kb on + strand at 40.769 kb on - strand at 40.769 kb on - strand at 40.782 kb on - strand at 40.852 kb on - strand at 40.901 kb on - strand, within LU632_RS25550 at 40.912 kb on - strand, within LU632_RS25550 at 40.912 kb on - strand, within LU632_RS25550 at 40.913 kb on + strand, within LU632_RS25550 at 40.913 kb on + strand, within LU632_RS25550 at 40.914 kb on - strand, within LU632_RS25550 at 40.914 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.922 kb on - strand, within LU632_RS25550 at 40.922 kb on - strand, within LU632_RS25550 at 41.204 kb on - strand, within LU632_RS25550 at 41.204 kb on - strand, within LU632_RS25550 at 41.374 kb on - strand, within LU632_RS25555 at 41.428 kb on - strand at 41.454 kb on - strand at 41.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX) remove 40,040 + LU632_RS25540 0.52 +0.7 40,312 - +1.4 40,315 + -3.3 40,321 + -1.5 40,326 + +0.3 40,326 + -3.6 40,354 + +1.1 40,372 + -1.0 40,373 - +1.0 40,455 - -3.5 40,461 + -1.7 40,470 - LU632_RS25545 0.10 -1.9 40,494 + LU632_RS25545 0.24 +0.3 40,665 + -2.4 40,674 + -1.3 40,674 + +0.1 40,674 + -1.6 40,675 - -3.0 40,675 - -0.1 40,675 - -1.1 40,675 - -0.9 40,675 - -1.9 40,675 - +3.4 40,675 - -1.1 40,675 - +1.5 40,696 + +2.5 40,696 + -0.7 40,696 + +1.5 40,697 - -1.7 40,713 + +2.1 40,713 + +0.5 40,719 + +1.4 40,719 + +0.7 40,719 + +1.9 40,720 - -1.9 40,730 + -1.1 40,760 + -1.6 40,761 - +0.5 40,768 + -0.2 40,768 + +0.9 40,769 - -0.1 40,769 - -4.0 40,782 - -0.5 40,852 - -1.0 40,901 - LU632_RS25550 0.17 +2.2 40,912 - LU632_RS25550 0.19 +0.1 40,912 - LU632_RS25550 0.19 +0.1 40,913 + LU632_RS25550 0.19 +2.6 40,913 + LU632_RS25550 0.19 -2.2 40,914 - LU632_RS25550 0.19 +0.8 40,914 - LU632_RS25550 0.19 +0.3 40,920 - LU632_RS25550 0.20 +0.3 40,920 - LU632_RS25550 0.20 +2.5 40,920 - LU632_RS25550 0.20 +0.1 40,920 - LU632_RS25550 0.20 +1.3 40,920 - LU632_RS25550 0.20 +3.4 40,920 - LU632_RS25550 0.20 +0.6 40,922 - LU632_RS25550 0.21 -2.5 40,922 - LU632_RS25550 0.21 -0.2 41,204 - LU632_RS25550 0.77 +0.7 41,204 - LU632_RS25550 0.77 +1.9 41,374 - LU632_RS25555 0.48 +0.3 41,428 - +8.8 41,454 - +0.7 41,627 + -0.1
Or see this region's nucleotide sequence