Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23710 and tnpA are separated by 311 nucleotides tnpA and LU632_RS23720 are separated by 169 nucleotides LU632_RS23720 and LU632_RS23725 are separated by 182 nucleotides LU632_RS23725 and LU632_RS23730 are separated by 121 nucleotides
LU632_RS23710: LU632_RS23710 - YitT family protein, at 4,524,359 to 4,524,961
_RS23710
LU632_RS23715: tnpA - IS200/IS605 family transposase, at 4,525,273 to 4,525,683
tnpA
LU632_RS23720: LU632_RS23720 - Lrp/AsnC family transcriptional regulator, at 4,525,853 to 4,526,258
_RS23720
LU632_RS23725: LU632_RS23725 - hypothetical protein, at 4,526,441 to 4,526,608
_RS23725
LU632_RS23730: LU632_RS23730 - S8 family serine peptidase, at 4,526,730 to 4,528,649
_RS23730
Position (kb) 4525
4526
4527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4524.947 kb on + strand at 4524.947 kb on + strand at 4524.948 kb on - strand at 4524.948 kb on - strand at 4525.118 kb on + strand at 4525.119 kb on - strand at 4525.528 kb on + strand, within tnpA at 4525.528 kb on + strand, within tnpA at 4525.528 kb on + strand, within tnpA at 4525.581 kb on + strand, within tnpA at 4525.688 kb on - strand at 4525.688 kb on - strand at 4525.999 kb on - strand, within LU632_RS23720 at 4526.077 kb on + strand, within LU632_RS23720 at 4526.093 kb on + strand, within LU632_RS23720 at 4526.097 kb on + strand, within LU632_RS23720 at 4526.268 kb on - strand at 4526.286 kb on + strand at 4526.319 kb on + strand at 4526.319 kb on + strand at 4526.343 kb on + strand at 4526.343 kb on + strand at 4526.390 kb on + strand at 4526.509 kb on - strand, within LU632_RS23725 at 4526.509 kb on - strand, within LU632_RS23725 at 4526.731 kb on + strand at 4526.795 kb on + strand at 4527.005 kb on + strand, within LU632_RS23730 at 4527.129 kb on + strand, within LU632_RS23730 at 4527.129 kb on + strand, within LU632_RS23730 at 4527.129 kb on + strand, within LU632_RS23730 at 4527.130 kb on - strand, within LU632_RS23730 at 4527.158 kb on - strand, within LU632_RS23730 at 4527.158 kb on - strand, within LU632_RS23730 at 4527.254 kb on - strand, within LU632_RS23730
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX) remove 4,524,947 + -3.2 4,524,947 + -0.5 4,524,948 - +0.8 4,524,948 - +0.2 4,525,118 + +2.9 4,525,119 - +0.9 4,525,528 + tnpA LU632_RS23715 0.62 +1.4 4,525,528 + tnpA LU632_RS23715 0.62 +1.5 4,525,528 + tnpA LU632_RS23715 0.62 +0.1 4,525,581 + tnpA LU632_RS23715 0.75 -1.1 4,525,688 - -1.6 4,525,688 - +1.1 4,525,999 - LU632_RS23720 0.36 -1.1 4,526,077 + LU632_RS23720 0.55 -1.6 4,526,093 + LU632_RS23720 0.59 -2.0 4,526,097 + LU632_RS23720 0.60 -2.7 4,526,268 - -0.2 4,526,286 + -0.5 4,526,319 + +2.0 4,526,319 + -0.3 4,526,343 + +0.4 4,526,343 + -0.6 4,526,390 + +1.0 4,526,509 - LU632_RS23725 0.40 +0.8 4,526,509 - LU632_RS23725 0.40 +1.6 4,526,731 + -2.0 4,526,795 + +0.8 4,527,005 + LU632_RS23730 0.14 +0.2 4,527,129 + LU632_RS23730 0.21 -0.1 4,527,129 + LU632_RS23730 0.21 -1.0 4,527,129 + LU632_RS23730 0.21 +2.0 4,527,130 - LU632_RS23730 0.21 +0.5 4,527,158 - LU632_RS23730 0.22 +0.4 4,527,158 - LU632_RS23730 0.22 +1.7 4,527,254 - LU632_RS23730 0.27 +0.7
Or see this region's nucleotide sequence