Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20100

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
3,828,216	+	pcnB	LU632_RS20090	0.83	-0.8
3,828,958	+				-0.1
3,828,958	+				-0.6
3,828,958	+				+1.1
3,828,959	-				+1.5
3,828,974	+				+1.1
3,829,063	+				+0.8
3,829,072	-	panB	LU632_RS20100	0.10	+2.5
3,829,189	+	panB	LU632_RS20100	0.25	-1.5
3,829,189	+	panB	LU632_RS20100	0.25	-0.8
3,829,259	-	panB	LU632_RS20100	0.34	+1.4
3,829,300	-	panB	LU632_RS20100	0.39	-0.1
3,829,317	+	panB	LU632_RS20100	0.41	+1.7
3,829,318	-	panB	LU632_RS20100	0.41	+3.8
3,829,536	+	panB	LU632_RS20100	0.69	+1.5
3,829,574	+	panB	LU632_RS20100	0.73	-1.3
3,829,575	-	panB	LU632_RS20100	0.73	+0.5
3,829,575	-	panB	LU632_RS20100	0.73	+1.1
3,829,575	-	panB	LU632_RS20100	0.73	+4.9
3,829,579	-	panB	LU632_RS20100	0.74	-0.8
3,829,729	+				+2.3
3,829,729	+				-1.4
3,829,730	-				-0.4
3,829,781	-				+0.7
3,829,781	-				-0.2
3,829,869	+				-0.6
3,829,912	-	panC	LU632_RS20105	0.13	+2.3
3,829,912	-	panC	LU632_RS20105	0.13	-0.5
3,829,957	-	panC	LU632_RS20105	0.18	+1.5
3,830,126	+	panC	LU632_RS20105	0.38	-0.8
3,830,257	+	panC	LU632_RS20105	0.53	+1.7
3,830,302	+	panC	LU632_RS20105	0.59	+0.5
3,830,375	-	panC	LU632_RS20105	0.67	+0.5
3,830,472	+	panC	LU632_RS20105	0.78	+2.8
3,830,629	-				+2.7