Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS16545 and LU632_RS16550 overlap by 1 nucleotides LU632_RS16550 and LU632_RS16555 are separated by 61 nucleotides LU632_RS16555 and LU632_RS16560 are separated by 17 nucleotides LU632_RS16560 and LU632_RS16565 overlap by 23 nucleotides LU632_RS16565 and LU632_RS16570 are separated by 65 nucleotides LU632_RS16570 and LU632_RS16575 overlap by 4 nucleotides
LU632_RS16545: LU632_RS16545 - hypothetical protein, at 3,133,621 to 3,134,190
_RS16545
LU632_RS16550: LU632_RS16550 - hypothetical protein, at 3,134,190 to 3,134,357
_RS16550
LU632_RS16555: LU632_RS16555 - hypothetical protein, at 3,134,419 to 3,134,613
_RS16555
LU632_RS16560: LU632_RS16560 - hypothetical protein, at 3,134,631 to 3,134,978
_RS16560
LU632_RS16565: LU632_RS16565 - hypothetical protein, at 3,134,956 to 3,135,153
_RS16565
LU632_RS16570: LU632_RS16570 - hypothetical protein, at 3,135,219 to 3,135,359
_RS16570
LU632_RS16575: LU632_RS16575 - hypothetical protein, at 3,135,356 to 3,135,565
_RS16575
Position (kb) 3134
3135
3136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3134.035 kb on + strand, within LU632_RS16545 at 3134.035 kb on + strand, within LU632_RS16545 at 3134.035 kb on + strand, within LU632_RS16545 at 3134.035 kb on + strand, within LU632_RS16545 at 3134.036 kb on - strand, within LU632_RS16545 at 3134.323 kb on - strand, within LU632_RS16550 at 3134.326 kb on - strand, within LU632_RS16550 at 3134.461 kb on + strand, within LU632_RS16555 at 3134.473 kb on - strand, within LU632_RS16555 at 3134.513 kb on + strand, within LU632_RS16555 at 3134.735 kb on + strand, within LU632_RS16560 at 3134.736 kb on - strand, within LU632_RS16560 at 3134.877 kb on + strand, within LU632_RS16560 at 3135.090 kb on + strand, within LU632_RS16565 at 3135.091 kb on - strand, within LU632_RS16565 at 3135.114 kb on - strand, within LU632_RS16565 at 3135.283 kb on + strand, within LU632_RS16570 at 3135.514 kb on + strand, within LU632_RS16575 at 3135.522 kb on + strand, within LU632_RS16575 at 3135.522 kb on + strand, within LU632_RS16575 at 3135.526 kb on + strand, within LU632_RS16575 at 3135.527 kb on - strand, within LU632_RS16575 at 3135.546 kb on + strand at 3135.547 kb on - strand at 3135.549 kb on + strand at 3135.553 kb on + strand at 3135.573 kb on + strand at 3135.574 kb on - strand at 3135.574 kb on - strand at 3135.596 kb on + strand at 3135.606 kb on + strand at 3135.651 kb on - strand at 3135.737 kb on + strand at 3135.738 kb on - strand at 3135.738 kb on - strand at 3135.777 kb on - strand at 3135.865 kb on + strand at 3135.879 kb on + strand at 3135.879 kb on + strand at 3135.893 kb on + strand at 3135.896 kb on - strand at 3135.896 kb on - strand at 3135.907 kb on - strand at 3135.938 kb on - strand at 3135.956 kb on - strand at 3135.959 kb on - strand at 3135.959 kb on - strand at 3135.983 kb on + strand at 3135.985 kb on + strand at 3136.023 kb on + strand at 3136.028 kb on - strand at 3136.048 kb on - strand at 3136.048 kb on - strand at 3136.051 kb on + strand at 3136.139 kb on + strand at 3136.141 kb on + strand at 3136.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX) remove 3,134,035 + LU632_RS16545 0.73 +0.0 3,134,035 + LU632_RS16545 0.73 -0.4 3,134,035 + LU632_RS16545 0.73 +0.2 3,134,035 + LU632_RS16545 0.73 +2.2 3,134,036 - LU632_RS16545 0.73 +1.7 3,134,323 - LU632_RS16550 0.79 +0.9 3,134,326 - LU632_RS16550 0.81 +0.2 3,134,461 + LU632_RS16555 0.22 +0.0 3,134,473 - LU632_RS16555 0.28 -1.9 3,134,513 + LU632_RS16555 0.48 -2.3 3,134,735 + LU632_RS16560 0.30 -0.5 3,134,736 - LU632_RS16560 0.30 -0.8 3,134,877 + LU632_RS16560 0.71 +1.3 3,135,090 + LU632_RS16565 0.68 -0.8 3,135,091 - LU632_RS16565 0.68 -1.3 3,135,114 - LU632_RS16565 0.80 +0.3 3,135,283 + LU632_RS16570 0.45 +3.0 3,135,514 + LU632_RS16575 0.75 +0.5 3,135,522 + LU632_RS16575 0.79 -0.7 3,135,522 + LU632_RS16575 0.79 -1.0 3,135,526 + LU632_RS16575 0.81 -1.2 3,135,527 - LU632_RS16575 0.81 -0.9 3,135,546 + +0.5 3,135,547 - -0.4 3,135,549 + +1.8 3,135,553 + -1.1 3,135,573 + +2.2 3,135,574 - -2.8 3,135,574 - +1.6 3,135,596 + -1.4 3,135,606 + +0.6 3,135,651 - +0.4 3,135,737 + +0.3 3,135,738 - +0.7 3,135,738 - +0.6 3,135,777 - +0.3 3,135,865 + +0.3 3,135,879 + -1.8 3,135,879 + +3.1 3,135,893 + +0.0 3,135,896 - +0.2 3,135,896 - -0.5 3,135,907 - +3.7 3,135,938 - -0.2 3,135,956 - +0.7 3,135,959 - -0.0 3,135,959 - -0.7 3,135,983 + +1.0 3,135,985 + +0.6 3,136,023 + +1.3 3,136,028 - +0.3 3,136,048 - +0.5 3,136,048 - -0.6 3,136,051 + +0.5 3,136,139 + +3.3 3,136,141 + +0.7 3,136,141 + -0.3
Or see this region's nucleotide sequence