Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12935

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
2,466,010	+				+1.1
2,466,020	-				+2.1
2,466,020	-				+0.3
2,466,139	-	rssA	LU632_RS12930	0.17	-0.4
2,466,187	+	rssA	LU632_RS12930	0.22	-0.8
2,466,187	+	rssA	LU632_RS12930	0.22	+0.5
2,466,187	+	rssA	LU632_RS12930	0.22	-0.6
2,466,188	-	rssA	LU632_RS12930	0.22	+0.5
2,466,188	-	rssA	LU632_RS12930	0.22	+0.5
2,466,188	-	rssA	LU632_RS12930	0.22	+0.3
2,466,302	+	rssA	LU632_RS12930	0.35	-1.4
2,466,303	-	rssA	LU632_RS12930	0.35	-0.0
2,466,303	-	rssA	LU632_RS12930	0.35	-0.9
2,466,303	-	rssA	LU632_RS12930	0.35	+0.5
2,466,493	+	rssA	LU632_RS12930	0.57	+1.1
2,466,493	+	rssA	LU632_RS12930	0.57	-0.2
2,466,494	-	rssA	LU632_RS12930	0.57	+1.4
2,466,494	-	rssA	LU632_RS12930	0.57	-0.1
2,466,681	-	rssA	LU632_RS12930	0.78	-2.1
2,466,731	+	rssA	LU632_RS12930	0.84	-1.7
2,466,732	-	rssA	LU632_RS12930	0.84	-2.6
2,466,732	-	rssA	LU632_RS12930	0.84	-1.6
2,466,732	-	rssA	LU632_RS12930	0.84	+0.3
2,466,798	+				-0.2
2,466,798	+				-0.1
2,466,799	-				-1.3
2,466,802	+				-1.5
2,466,891	+				-0.1
2,466,896	-				+1.8
2,466,896	-				-2.0
2,466,910	+				+0.0
2,466,911	-				-1.8
2,466,911	-				-2.6
2,466,911	-				-2.4
2,467,012	+				+0.4
2,467,014	+				+1.0
2,467,014	+				+0.8
2,467,014	+				-1.1
2,467,015	-				-1.0
2,467,015	-				+1.0
2,467,019	+				+1.6
2,467,019	+				+0.6
2,467,019	+				-2.1
2,467,019	+				-2.1
2,467,020	-				-0.3
2,467,020	-				-1.5
2,467,020	-				-1.4
2,467,020	-				+1.8
2,467,020	-				-2.0
2,467,087	+		LU632_RS12935	0.24	+1.1
2,467,100	+		LU632_RS12935	0.27	-1.0
2,467,100	+		LU632_RS12935	0.27	+3.5
2,467,100	+		LU632_RS12935	0.27	-0.4
2,467,100	+		LU632_RS12935	0.27	-1.3
2,467,100	+		LU632_RS12935	0.27	+1.7
2,467,100	+		LU632_RS12935	0.27	-0.3
2,467,100	+		LU632_RS12935	0.27	+2.6
2,467,100	+		LU632_RS12935	0.27	-0.0
2,467,100	+		LU632_RS12935	0.27	+0.2
2,467,100	+		LU632_RS12935	0.27	+1.2
2,467,100	+		LU632_RS12935	0.27	+1.4
2,467,101	-		LU632_RS12935	0.27	-0.5
2,467,101	-		LU632_RS12935	0.27	+2.0
2,467,101	-		LU632_RS12935	0.27	+1.2
2,467,101	-		LU632_RS12935	0.27	-0.1
2,467,101	-		LU632_RS12935	0.27	-0.1
2,467,101	-		LU632_RS12935	0.27	-1.0
2,467,101	-		LU632_RS12935	0.27	-2.0
2,467,101	-		LU632_RS12935	0.27	-0.1
2,467,102	+		LU632_RS12935	0.27	+0.2
2,467,102	+		LU632_RS12935	0.27	+2.7
2,467,103	+		LU632_RS12935	0.28	-2.0
2,467,103	-		LU632_RS12935	0.28	-1.2
2,467,103	-		LU632_RS12935	0.28	+0.5
2,467,104	+		LU632_RS12935	0.28	+1.2
2,467,105	-		LU632_RS12935	0.28	+1.2
2,467,117	+		LU632_RS12935	0.31	+1.6
2,467,230	-		LU632_RS12935	0.55	+1.6
2,467,230	-		LU632_RS12935	0.55	+1.2
2,467,345	+		LU632_RS12935	0.80	+0.6
2,467,345	+		LU632_RS12935	0.80	-0.1
2,467,346	-		LU632_RS12935	0.81	+2.3
2,467,346	-		LU632_RS12935	0.81	+0.3
2,467,449	-				-2.2
2,467,450	+				-0.1
2,467,451	-				-2.6
2,467,451	-				-3.8
2,467,471	+				-0.2
2,467,561	+				-1.8
2,467,570	+	purU	LU632_RS12940	0.10	+0.4
2,467,571	-	purU	LU632_RS12940	0.11	-2.7
2,467,583	-	purU	LU632_RS12940	0.12	-2.1
2,467,583	-	purU	LU632_RS12940	0.12	-4.1
2,467,634	-	purU	LU632_RS12940	0.18	-2.0
2,467,669	+	purU	LU632_RS12940	0.22	-2.5
2,467,750	+	purU	LU632_RS12940	0.32	-1.7
2,467,756	-	purU	LU632_RS12940	0.32	-2.6
2,467,896	+	purU	LU632_RS12940	0.49	-2.8
2,467,939	+	purU	LU632_RS12940	0.54	-1.4
2,467,973	+	purU	LU632_RS12940	0.58	+1.0
2,467,974	-	purU	LU632_RS12940	0.58	-1.9
2,467,991	+	purU	LU632_RS12940	0.60	-1.7
2,467,991	+	purU	LU632_RS12940	0.60	-1.4
2,467,991	+	purU	LU632_RS12940	0.60	-1.1
2,467,991	+	purU	LU632_RS12940	0.60	-1.1
2,467,992	-	purU	LU632_RS12940	0.60	-2.0
2,467,994	-	purU	LU632_RS12940	0.60	-4.1
2,467,994	-	purU	LU632_RS12940	0.60	-2.2
2,468,020	-	purU	LU632_RS12940	0.63	-3.6
2,468,090	+	purU	LU632_RS12940	0.72	-2.8
2,468,102	+	purU	LU632_RS12940	0.73	-0.6
2,468,103	-	purU	LU632_RS12940	0.73	-1.5
2,468,103	-	purU	LU632_RS12940	0.73	-1.7
2,468,141	+	purU	LU632_RS12940	0.78	-3.3
2,468,176	+	purU	LU632_RS12940	0.82	-2.2
2,468,203	+	purU	LU632_RS12940	0.85	-1.5
2,468,204	-	purU	LU632_RS12940	0.85	-0.9
2,468,204	-	purU	LU632_RS12940	0.85	+0.2
2,468,207	+	purU	LU632_RS12940	0.86	-3.7
2,468,207	+	purU	LU632_RS12940	0.86	-1.5
2,468,208	-	purU	LU632_RS12940	0.86	-1.0
2,468,221	+	purU	LU632_RS12940	0.87	-1.2
2,468,221	+	purU	LU632_RS12940	0.87	-2.0
2,468,222	-	purU	LU632_RS12940	0.87	-2.5
2,468,303	+				-1.7
2,468,327	+				-1.8
2,468,414	-				-1.0