Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11015

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
2,104,859	+		LU632_RS11010	0.23	-0.7
2,104,949	+		LU632_RS11010	0.32	-1.4
2,104,950	-		LU632_RS11010	0.32	-1.2
2,105,093	+		LU632_RS11010	0.45	+2.6
2,105,168	+		LU632_RS11010	0.53	-1.1
2,105,168	+		LU632_RS11010	0.53	+2.9
2,105,224	-		LU632_RS11010	0.58	+2.2
2,105,224	-		LU632_RS11010	0.58	-0.3
2,105,224	-		LU632_RS11010	0.58	-0.0
2,105,346	-		LU632_RS11010	0.70	-2.2
2,105,346	-		LU632_RS11010	0.70	+2.6
2,105,346	-		LU632_RS11010	0.70	+1.7
2,105,439	+		LU632_RS11010	0.79	+0.4
2,105,452	+		LU632_RS11010	0.80	+1.2
2,105,452	+		LU632_RS11010	0.80	+2.6
2,105,658	-				-1.0
2,105,658	-				-1.3
2,105,658	-				-0.6
2,105,726	+				+0.2
2,105,753	+				-1.3
2,105,754	-				+2.2
2,105,754	-				-1.5
2,106,108	+		LU632_RS11015	0.35	-1.7
2,106,223	+		LU632_RS11015	0.49	-2.1
2,106,224	-		LU632_RS11015	0.49	+3.7
2,106,244	+		LU632_RS11015	0.52	+2.2
2,106,245	-		LU632_RS11015	0.52	-0.3
2,106,245	-		LU632_RS11015	0.52	-0.4
2,106,274	-		LU632_RS11015	0.55	-2.6
2,106,433	+		LU632_RS11015	0.75	+3.7
2,106,460	+		LU632_RS11015	0.78	-1.9
2,106,460	+		LU632_RS11015	0.78	-0.1
2,106,460	+		LU632_RS11015	0.78	-0.2
2,106,460	+		LU632_RS11015	0.78	+0.5
2,106,471	+		LU632_RS11015	0.79	-2.2
2,106,482	-		LU632_RS11015	0.80	+2.0
2,106,618	+				-2.8
2,106,619	-				-0.2
2,106,718	-				+0.0
2,106,718	-				-0.0
2,107,503	-				+0.5