Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10795

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
2,057,502	+	tagH	LU632_RS10785	0.82	-1.4
2,057,503	-	tagH	LU632_RS10785	0.82	-1.1
2,057,503	-	tagH	LU632_RS10785	0.82	-0.2
2,057,554	-	tagH	LU632_RS10785	0.86	-1.1
2,057,563	-	tagH	LU632_RS10785	0.87	+2.2
2,057,563	-	tagH	LU632_RS10785	0.87	-1.3
2,057,589	+	tagH	LU632_RS10785	0.89	+0.2
2,057,589	+	tagH	LU632_RS10785	0.89	-1.1
2,057,589	+	tagH	LU632_RS10785	0.89	-0.5
2,057,590	-	tagH	LU632_RS10785	0.89	-0.2
2,057,673	+				-1.1
2,057,706	+				-0.3
2,057,768	+				-1.6
2,057,768	+				-0.1
2,057,820	+				-0.9
2,057,843	+	tagF	LU632_RS10790	0.12	+0.6
2,057,843	+	tagF	LU632_RS10790	0.12	-0.8
2,057,844	-	tagF	LU632_RS10790	0.12	-4.8
2,057,855	+	tagF	LU632_RS10790	0.14	-2.0
2,057,856	-	tagF	LU632_RS10790	0.14	-2.1
2,057,856	-	tagF	LU632_RS10790	0.14	-1.9
2,057,905	+	tagF	LU632_RS10790	0.21	-1.8
2,057,905	+	tagF	LU632_RS10790	0.21	+1.1
2,057,906	-	tagF	LU632_RS10790	0.21	-0.4
2,057,906	-	tagF	LU632_RS10790	0.21	-1.0
2,057,967	+	tagF	LU632_RS10790	0.30	-1.1
2,057,993	+	tagF	LU632_RS10790	0.34	-1.7
2,057,993	+	tagF	LU632_RS10790	0.34	-1.2
2,058,136	-	tagF	LU632_RS10790	0.54	-1.2
2,058,136	-	tagF	LU632_RS10790	0.54	-2.0
2,058,237	+	tagF	LU632_RS10790	0.69	-0.1
2,058,331	+	tagF	LU632_RS10790	0.82	-0.4
2,058,357	-	tagF	LU632_RS10790	0.86	-2.2
2,058,428	-				-1.3
2,058,459	+				-0.2
2,058,459	+				-1.2
2,058,460	-				+2.1
2,058,506	+				-1.5
2,058,530	+				-0.3
2,058,530	+				-0.6
2,058,535	+				-1.3
2,058,639	-				+0.6
2,058,717	+	tssM	LU632_RS10795	0.12	+1.9
2,058,717	+	tssM	LU632_RS10795	0.12	+3.5
2,058,718	-	tssM	LU632_RS10795	0.12	-1.9
2,058,718	-	tssM	LU632_RS10795	0.12	+0.6
2,058,744	+	tssM	LU632_RS10795	0.14	+2.4
2,058,744	+	tssM	LU632_RS10795	0.14	+3.4
2,058,859	-	tssM	LU632_RS10795	0.19	-0.7
2,058,860	+	tssM	LU632_RS10795	0.19	+2.1
2,058,861	-	tssM	LU632_RS10795	0.19	+1.1
2,059,061	+	tssM	LU632_RS10795	0.29	-1.9
2,059,081	+	tssM	LU632_RS10795	0.29	+2.1
2,059,081	+	tssM	LU632_RS10795	0.29	+1.6
2,059,087	+	tssM	LU632_RS10795	0.30	-2.3
2,059,090	-	tssM	LU632_RS10795	0.30	+1.5
2,059,092	+	tssM	LU632_RS10795	0.30	+1.3
2,059,136	+	tssM	LU632_RS10795	0.32	-0.3
2,059,137	-	tssM	LU632_RS10795	0.32	-2.3
2,059,283	-	tssM	LU632_RS10795	0.39	-0.7
2,059,340	+	tssM	LU632_RS10795	0.42	+0.2
2,059,468	-	tssM	LU632_RS10795	0.48	-0.3
2,059,589	-	tssM	LU632_RS10795	0.53	+2.9
2,059,664	-	tssM	LU632_RS10795	0.57	-1.0
2,059,664	-	tssM	LU632_RS10795	0.57	-0.2
2,059,664	-	tssM	LU632_RS10795	0.57	-0.2
2,059,717	+	tssM	LU632_RS10795	0.60	+1.5
2,059,889	+	tssM	LU632_RS10795	0.68	-1.6
2,060,111	+	tssM	LU632_RS10795	0.78	+1.0
2,060,154	+	tssM	LU632_RS10795	0.80	-1.9
2,060,154	+	tssM	LU632_RS10795	0.80	+1.4
2,060,154	+	tssM	LU632_RS10795	0.80	+1.4
2,060,203	+	tssM	LU632_RS10795	0.83	+2.4
2,060,203	+	tssM	LU632_RS10795	0.83	+1.2
2,060,203	+	tssM	LU632_RS10795	0.83	+1.5
2,060,204	-	tssM	LU632_RS10795	0.83	+1.0
2,060,206	-	tssM	LU632_RS10795	0.83	+0.6
2,060,335	+	tssM	LU632_RS10795	0.89	-0.4
2,060,336	-	tssM	LU632_RS10795	0.89	-1.7
2,060,340	-	tssM	LU632_RS10795	0.89	+1.8
2,060,391	-				+0.0
2,060,406	+				-0.5
2,060,407	-				-1.7
2,060,407	-				-2.3
2,060,407	-				-0.3
2,060,412	-				-0.0
2,060,412	-				-1.0
2,060,484	-				-1.2
2,060,495	-				+1.0
2,060,564	+				-0.2
2,060,615	+				+1.5
2,060,729	-	icmH	LU632_RS10800	0.13	+0.3
2,060,784	+	icmH	LU632_RS10800	0.17	+1.8
2,060,785	-	icmH	LU632_RS10800	0.17	-1.5
2,060,792	+	icmH	LU632_RS10800	0.18	+0.4
2,060,792	+	icmH	LU632_RS10800	0.18	+1.3
2,060,793	-	icmH	LU632_RS10800	0.18	-3.1
2,060,793	-	icmH	LU632_RS10800	0.18	-0.7
2,060,795	+	icmH	LU632_RS10800	0.18	-0.6
2,060,851	+	icmH	LU632_RS10800	0.23	+1.8
2,060,853	+	icmH	LU632_RS10800	0.23	-1.3
2,060,854	-	icmH	LU632_RS10800	0.23	-0.0
2,060,884	-	icmH	LU632_RS10800	0.26	+0.7
2,061,136	-	icmH	LU632_RS10800	0.46	-1.3
2,061,169	+	icmH	LU632_RS10800	0.49	-0.2
2,061,217	-	icmH	LU632_RS10800	0.53	+1.1
2,061,368	-	icmH	LU632_RS10800	0.65	-1.2
2,061,377	+	icmH	LU632_RS10800	0.66	+0.3
2,061,427	-	icmH	LU632_RS10800	0.70	-1.8
2,061,436	+	icmH	LU632_RS10800	0.71	+0.6
2,061,566	+	icmH	LU632_RS10800	0.82	+2.3