Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09680

Experiment: Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Main Stem Xylem (TE-S-C5-SX)
1,833,404	-	artM	LU632_RS09670	0.69	+0.4
1,833,404	-	artM	LU632_RS09670	0.69	-1.5
1,833,406	+	artM	LU632_RS09670	0.70	+0.6
1,833,406	+	artM	LU632_RS09670	0.70	-0.2
1,833,407	-	artM	LU632_RS09670	0.70	+1.6
1,833,595	-				-1.3
1,833,599	-				+0.7
1,833,599	-				+1.0
1,833,655	+				-0.7
1,833,656	-				-1.2
1,833,656	-				+0.2
1,833,690	+	artQ	LU632_RS09675	0.12	-1.9
1,833,695	-	artQ	LU632_RS09675	0.13	+1.2
1,833,709	+	artQ	LU632_RS09675	0.15	-0.2
1,833,710	-	artQ	LU632_RS09675	0.15	+0.7
1,833,711	+	artQ	LU632_RS09675	0.15	-1.0
1,833,746	-	artQ	LU632_RS09675	0.20	+2.3
1,833,746	-	artQ	LU632_RS09675	0.20	-2.7
1,833,763	+	artQ	LU632_RS09675	0.22	-0.5
1,833,982	-	artQ	LU632_RS09675	0.53	-1.3
1,834,312	-				-1.3
1,834,354	+				-1.7
1,834,354	+				-0.3
1,834,354	+				-2.3
1,834,355	-				+0.5
1,834,355	-				+0.7
1,834,417	-	artJ	LU632_RS09680	0.12	+0.1
1,834,598	-	artJ	LU632_RS09680	0.36	-0.5
1,834,607	-	artJ	LU632_RS09680	0.38	-2.4
1,834,754	-	artJ	LU632_RS09680	0.58	-0.1
1,834,877	+	artJ	LU632_RS09680	0.74	-0.3
1,834,972	+	artJ	LU632_RS09680	0.87	+0.3
1,835,066	+				-0.0
1,835,066	+				+0.1
1,835,091	+				-1.0
1,835,091	+				-0.5
1,835,092	-				-0.3
1,835,092	-				-2.9
1,835,123	-				+2.6
1,835,168	-	artP	LU632_RS09685	0.12	+0.6
1,835,169	+	artP	LU632_RS09685	0.12	-0.3
1,835,169	+	artP	LU632_RS09685	0.12	+3.8
1,835,170	-	artP	LU632_RS09685	0.13	-0.0
1,835,170	-	artP	LU632_RS09685	0.13	-0.3
1,835,170	-	artP	LU632_RS09685	0.13	-1.3
1,835,174	+	artP	LU632_RS09685	0.13	-0.1
1,835,468	+	artP	LU632_RS09685	0.53	+1.3
1,835,469	-	artP	LU632_RS09685	0.54	+1.1
1,835,536	-	artP	LU632_RS09685	0.63	-0.8
1,835,879	+				-1.7
1,835,987	+				-1.0
1,835,987	+				+1.1
1,835,988	-				-0.7